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Search of human proteins with 239740735
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740735 PREDICTED: hypothetical protein [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740735 PREDICTED: hypothetical protein [Homo sapiens] 335 7e-93
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 34 0.058
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 33 0.076
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 33 0.076
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 33 0.076
gi|7657154 hairy/enhancer-of-split related with YRPW motif-like ... 33 0.13
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 32 0.17
gi|12707562 period 2 [Homo sapiens] 32 0.29
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 32 0.29
gi|215598824 ankyrin repeat and SOCS box-containing 10 isoform 2... 32 0.29
gi|215598819 ankyrin repeat and SOCS box-containing 10 isoform 1... 32 0.29
gi|146134388 YLP motif containing 1 [Homo sapiens] 31 0.38
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 31 0.49
gi|148727255 microtubule associated serine/threonine kinase fami... 31 0.49
gi|21362070 hypothetical protein LOC79034 [Homo sapiens] 31 0.49
gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo sap... 30 0.65
gi|239754620 PREDICTED: hypothetical protein [Homo sapiens] 30 0.65
gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo sap... 30 0.65
gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo sap... 30 0.65
gi|148612879 polyhomeotic like 3 [Homo sapiens] 30 0.65
gi|4505561 pyrimidinergic receptor P2Y4 [Homo sapiens] 30 0.65
gi|27436893 tapasin isoform 1 precursor [Homo sapiens] 30 0.84
gi|27436897 tapasin isoform 3 precursor [Homo sapiens] 30 0.84
gi|27436895 tapasin isoform 2 precursor [Homo sapiens] 30 0.84
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 30 0.84
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 30 0.84
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 30 1.1
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 29 1.4
gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 29 1.9
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 29 1.9
>gi|239740735 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 335 bits (860), Expect = 7e-93
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MEWWLPSLTSRQEAQDKGHQAELGAEIAPHGVGRQERSWAWGRMVCPGLLCLSAWLSVQA 60
MEWWLPSLTSRQEAQDKGHQAELGAEIAPHGVGRQERSWAWGRMVCPGLLCLSAWLSVQA
Sbjct: 1 MEWWLPSLTSRQEAQDKGHQAELGAEIAPHGVGRQERSWAWGRMVCPGLLCLSAWLSVQA 60
Query: 61 ETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHPSGRAPLSCQSRKQKL 120
ETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHPSGRAPLSCQSRKQKL
Sbjct: 61 ETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHPSGRAPLSCQSRKQKL 120
Query: 121 QKSHPLLPKVQDSPLQYLLSGLSSSPVSPNHPLRDQK 157
QKSHPLLPKVQDSPLQYLLSGLSSSPVSPNHPLRDQK
Sbjct: 121 QKSHPLLPKVQDSPLQYLLSGLSSSPVSPNHPLRDQK 157
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 33.9 bits (76), Expect = 0.058
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 20/99 (20%)
Query: 70 FPSPAPHQPPAFY---TICVLAPAAR------------PACPTHITFPEHPSGRAPLSCQ 114
FP+ PH+PP T +PA+ P T++ +P P G +PLS Q
Sbjct: 1482 FPNLLPHRPPLLVFPPTPVTCSPASDESPLTPLEVKKLPVLETNLKYPVQPEGSSPLSPQ 1541
Query: 115 -SRKQKLQKSHPLLPKVQDSPLQYLLSGLSSSPVSPNHP 152
S+ QK P P + + SG +S P +P P
Sbjct: 1542 YSKSQKGDGDRPASPGL----ALFNGSGRASPPSTPPPP 1576
Score = 28.9 bits (63), Expect = 1.9
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 27/98 (27%)
Query: 71 PSPAPHQPPAFYTICVLAPAARPACPTHITFPEHP----SGRAPLSCQSRK-QKLQKSHP 125
P P P PPA Y C H+ FP P +G+A S ++ K S P
Sbjct: 1576 PPPPPGPPPAPYRPC-----------AHLAFPPEPAPVNAGKAGPSAEAPKVHPKPNSAP 1624
Query: 126 L------LPKVQDSPLQYL-----LSGLSSSPVSPNHP 152
+ PK+ SP++ +G S+SP +P P
Sbjct: 1625 VAGPCSSFPKIPYSPVKATRADARKAGSSASPPAPYSP 1662
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 33.5 bits (75), Expect = 0.076
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 45 VCPGLLCLSAWLSVQAETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEH 104
VCP L + P L + T PS P PP + +A P PT + P
Sbjct: 743 VCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPP----VLTVATPPPPLLPT-VPLPAP 797
Query: 105 PSGRAPLSCQSRKQKLQKSHPLLPKVQDSPLQYLLSGL--SSSPVSPNHPL 153
S +P C S PL SPL L + S SP+ P PL
Sbjct: 798 SSSASPHPCPS---------PLSNATAQSPLPILSPTVSPSPSPIPPVEPL 839
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 33.5 bits (75), Expect = 0.076
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 45 VCPGLLCLSAWLSVQAETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEH 104
VCP L + P L + T PS P PP + +A P PT + P
Sbjct: 944 VCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPP----VLTVATPPPPLLPT-VPLPAP 998
Query: 105 PSGRAPLSCQSRKQKLQKSHPLLPKVQDSPLQYLLSGL--SSSPVSPNHPL 153
S +P C S PL SPL L + S SP+ P PL
Sbjct: 999 SSSASPHPCPS---------PLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 33.5 bits (75), Expect = 0.076
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 45 VCPGLLCLSAWLSVQAETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEH 104
VCP L + P L + T PS P PP + +A P PT + P
Sbjct: 944 VCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPP----VLTVATPPPPLLPT-VPLPAP 998
Query: 105 PSGRAPLSCQSRKQKLQKSHPLLPKVQDSPLQYLLSGL--SSSPVSPNHPL 153
S +P C S PL SPL L + S SP+ P PL
Sbjct: 999 SSSASPHPCPS---------PLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
>gi|7657154 hairy/enhancer-of-split related with YRPW motif-like
[Homo sapiens]
Length = 328
Score = 32.7 bits (73), Expect = 0.13
Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 38 SWAWGRM-VCPGLLCLSAWLSVQAETPD-----LDLVTFPSPAPHQPPAFYTICVLAPAA 91
+W W CPGL LS L++ P + +P PA P ++ PA
Sbjct: 174 AWPWSFFHSCPGLPALSNQLAILGRVPSPVLPGVSSPAYPIPALRTAPLRRATGIILPAR 233
Query: 92 RPACP------THITFP-EHPSGRAPLSCQSRKQKLQKSHPLLPKVQDSP 134
R P T P E P+ P++ SR + PLL +P
Sbjct: 234 RNVLPSRGASSTRRARPLERPATPVPVAPSSRAARSSHIAPLLQSSSPTP 283
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 32.3 bits (72), Expect = 0.17
Identities = 38/135 (28%), Positives = 47/135 (34%), Gaps = 33/135 (24%)
Query: 29 PHGVGRQERSWAWGRMVCPGLLCLSAWLSVQAETPDLDLVTFPSP-APHQ------PPAF 81
PHG Q+ S P L A + A T +TF P PH PP
Sbjct: 176 PHGKCMQDPS--------PASLSPPAPPAPLASTLSPGPMTFSEPFGPHSTLSASGPPE- 226
Query: 82 YTICVLAPAARPACPTHITFPEHPSGRAPLSCQSRKQKLQKSHPLLPKVQDSPLQYLLSG 141
L P PA H+ FP P PL+ P DS L L G
Sbjct: 227 ----PLLPLKCPATQPHVVFPPSPQPHGPLASS-------------PPPPDSSLAGLQCG 269
Query: 142 LSSSPVSPNHPLRDQ 156
++ PV + PL +Q
Sbjct: 270 STTCPVPQSSPLHNQ 284
>gi|12707562 period 2 [Homo sapiens]
Length = 1255
Score = 31.6 bits (70), Expect = 0.29
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 69 TFPSPAPHQPPAFY-----------TICVLAPAARPACPTHITFPEHPSGRAPLSCQSRK 117
+FPS P+ P AF+ +A A++P P+ + P P
Sbjct: 912 SFPSGTPNLPQAFFPSQPQFPSHPTLTSEMASASQPEFPSRTSIPRQPCACPATRATPPS 971
Query: 118 QKLQKSHPLLPKVQDSPLQYLLSGLSSSP 146
+ S PL SPLQ L L +P
Sbjct: 972 AMGRASPPLFQSRSSSPLQLNLLQLEEAP 1000
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 31.6 bits (70), Expect = 0.29
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 62 TPDLDLVTFPSPAPH---QPPAFYTICVLAPAARPACPTHITFPEHPS 106
TPD+ L T PS H +PPAF ++ P R P T P P+
Sbjct: 1299 TPDIPLGTAPSMPGHNPMRPPAFLQQGMMGPHHRMMSPAQSTMPGQPT 1346
>gi|215598824 ankyrin repeat and SOCS box-containing 10 isoform 2
[Homo sapiens]
Length = 474
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 48 GLLCLSAWLSVQAETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHP-S 106
G + L AW +T L FPS ++ + P A + P H FP H
Sbjct: 3 GQVSLGAW-----DTGAFCLSVFPS---------CSLSLSLPLAYTSPPPHSPFPAHMLM 48
Query: 107 GRAPLSCQSRKQKLQKSHPLLPKVQDSPLQYLLSGLSSSP 146
+P C+ + + L HPL ++ + P + L S P
Sbjct: 49 SWSPEECKGQGEPLDDRHPLCARLVEKPSRGSEEHLKSGP 88
>gi|215598819 ankyrin repeat and SOCS box-containing 10 isoform 1
[Homo sapiens]
Length = 512
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 48 GLLCLSAWLSVQAETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHP-S 106
G + L AW +T L FPS ++ + P A + P H FP H
Sbjct: 3 GQVSLGAW-----DTGAFCLSVFPS---------CSLSLSLPLAYTSPPPHSPFPAHMLM 48
Query: 107 GRAPLSCQSRKQKLQKSHPLLPKVQDSPLQYLLSGLSSSP 146
+P C+ + + L HPL ++ + P + L S P
Sbjct: 49 SWSPEECKGQGEPLDDRHPLCARLVEKPSRGSEEHLKSGP 88
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 31.2 bits (69), Expect = 0.38
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 73 PAPHQPPAFYTICVLAPAARPACPTHITFPEHPSGRAPL-----SCQSRKQKLQKSHPLL 127
P P PP++Y P PA P+ P S AP S S + L S L
Sbjct: 166 PPPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYL 225
Query: 128 PKVQDSPLQYLLSGLSSSPVSPNHP 152
P Q SP + S ++P P
Sbjct: 226 PSSQASPSRPSQGHSKSQLLAPPPP 250
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 30.8 bits (68), Expect = 0.49
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 47 PGLLCLSAWLSVQAETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHPS 106
P L +A A P L P+PAP PA + AA A P+H P P
Sbjct: 520 PALAAAAAPALAAAAAPALAAAAAPAPAPAAAPA---VAAAPAAAASAAPSHSQKPSVPL 576
Query: 107 GRAPLSCQSRKQKLQKSHPLLPKVQ 131
+A C + Q K + P +Q
Sbjct: 577 IQASRPCPA-AQPPTKFIKIAPAIQ 600
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 30.8 bits (68), Expect = 0.49
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 96 PTHITFPEHPSGRAP----LSCQSRKQKLQKSHPLLPKVQDSPLQYLLSGLSSSPVSPNH 151
P H+ P HP P LS KQ L HP V+D P + + SP+
Sbjct: 2112 PVHLPRPGHPGPSEPADQKLSAVGEKQTLSPKHPKPSTVKDCPTLCKQTDNRQTDKSPSQ 2171
Query: 152 P 152
P
Sbjct: 2172 P 2172
Score = 26.6 bits (57), Expect = 9.3
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 59 QAETPDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHPSGRAP 110
+ E + L PS P PP + +PAAR C + P H SGR P
Sbjct: 1929 EPERKEQPLQRHPSSIP--PPPLTAKDLSSPAARQHCSS----PSHASGREP 1974
>gi|21362070 hypothetical protein LOC79034 [Homo sapiens]
Length = 449
Score = 30.8 bits (68), Expect = 0.49
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 73 PAPHQPPAFYTICVLAPAARPACPTH--------ITFPEHP 105
P H PP Y PAA PA PTH +TFP P
Sbjct: 407 PHIHTPPLGYGAVPAHPAAHPALPTHPGHTFISGVTFPFRP 447
>gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 30.4 bits (67), Expect = 0.65
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 71 PSPAPHQPPAFYTICVLAPAA---RPACPTHITFPEHPSGRAPLSCQSRKQKLQKSHPLL 127
P P P P +C+L PA+ RP T P P G A +C++ Q HP L
Sbjct: 115 PWPTPGSRPGPTCVCLLTPASSSLRPCLSDRGTCPGAPQG-AVGTCRASPQSPCHRHPSL 173
Query: 128 --------PKVQDSPL-----QYLLSGLSSSP-VSPNHPLR 154
P QD L L+SG++ +P SP P R
Sbjct: 174 RSGLEWTQPPDQDQGLLTPGSPPLVSGVTQTPWTSPFCPPR 214
>gi|239754620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 551
Score = 30.4 bits (67), Expect = 0.65
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 10 SRQEAQDKGHQAELGAEIAPHGVGRQERSWAWGRMVCPGLLCLSAWLSVQAETPDLD 66
SRQ+ + H +L +P G+Q+R V PG CLS + +A +D
Sbjct: 194 SRQQPLESSHCPDLPYHPSPGSSGQQDRGLPPAAPVFPGETCLSVYCRTKATLKPVD 250
>gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 30.4 bits (67), Expect = 0.65
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 71 PSPAPHQPPAFYTICVLAPAA---RPACPTHITFPEHPSGRAPLSCQSRKQKLQKSHPLL 127
P P P P +C+L PA+ RP T P P G A +C++ Q HP L
Sbjct: 115 PWPTPGSRPGPTCVCLLTPASSSLRPCLSDRGTCPGAPQG-AVGTCRASPQSPCHRHPSL 173
Query: 128 --------PKVQDSPL-----QYLLSGLSSSP-VSPNHPLR 154
P QD L L+SG++ +P SP P R
Sbjct: 174 RSGLEWTQPPDQDQGLLTPGSPPLVSGVTQTPWTSPFCPPR 214
>gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 30.4 bits (67), Expect = 0.65
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 71 PSPAPHQPPAFYTICVLAPAA---RPACPTHITFPEHPSGRAPLSCQSRKQKLQKSHPLL 127
P P P P +C+L PA+ RP T P P G A +C++ Q HP L
Sbjct: 115 PWPTPGSRPGPTCVCLLTPASSSLRPCLSDRGTCPGAPQG-AVGTCRASPQSPCHRHPSL 173
Query: 128 --------PKVQDSPL-----QYLLSGLSSSP-VSPNHPLR 154
P QD L L+SG++ +P SP P R
Sbjct: 174 RSGLEWTQPPDQDQGLLTPGSPPLVSGVTQTPWTSPFCPPR 214
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 30.4 bits (67), Expect = 0.65
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 73 PAPHQPPAFYTICVLAPAARPA----CPTHITFPEHPSGRAPLSCQSRKQKLQKSHPLLP 128
PAP PP Y + + P C P P+ R + L HPLL
Sbjct: 589 PAPVDPPVVYQVEDVCEEEMPEESDECVRMDRTPPPPTLSPAAITVGRGEDLTSEHPLLE 648
Query: 129 KVQDSPLQYLLSGLSSSPVSPNH 151
+V+ + + + + SP P+H
Sbjct: 649 QVELPAVASVSASVIKSPSDPSH 671
>gi|4505561 pyrimidinergic receptor P2Y4 [Homo sapiens]
Length = 365
Score = 30.4 bits (67), Expect = 0.65
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 31 GVGRQERSWAWGRMVCPGLLCLSAWLSVQ-AETPDLDLVT 69
G+ R+ WGR GLLCL+ WL V P+L VT
Sbjct: 136 GICHPLRALRWGRPRLAGLLCLAVWLVVAGCLVPNLFFVT 175
>gi|27436893 tapasin isoform 1 precursor [Homo sapiens]
Length = 448
Score = 30.0 bits (66), Expect = 0.84
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 24/105 (22%)
Query: 46 CPGLLCLSAWLSVQAETPDLDLVTF--PSPAPHQPPAFYTICVL-------APAARPAC- 95
CP L AWL V +P L L + P P P Q P T+ + PA R
Sbjct: 115 CPRALD-GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLG 173
Query: 96 -------------PTHITFPEHPSGRAPLSCQSRKQKLQKSHPLL 127
PT G P + R+Q L K H LL
Sbjct: 174 QDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLL 218
>gi|27436897 tapasin isoform 3 precursor [Homo sapiens]
Length = 412
Score = 30.0 bits (66), Expect = 0.84
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 24/105 (22%)
Query: 46 CPGLLCLSAWLSVQAETPDLDLVTF--PSPAPHQPPAFYTICVL-------APAARPAC- 95
CP L AWL V +P L L + P P P Q P T+ + PA R
Sbjct: 115 CPRALD-GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLG 173
Query: 96 -------------PTHITFPEHPSGRAPLSCQSRKQKLQKSHPLL 127
PT G P + R+Q L K H LL
Sbjct: 174 QDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLL 218
>gi|27436895 tapasin isoform 2 precursor [Homo sapiens]
Length = 299
Score = 30.0 bits (66), Expect = 0.84
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 24/105 (22%)
Query: 46 CPGLLCLSAWLSVQAETPDLDLVTF--PSPAPHQPPAFYTICVL-------APAARPAC- 95
CP L AWL V +P L L + P P P Q P T+ + PA R
Sbjct: 115 CPRALD-GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLG 173
Query: 96 -------------PTHITFPEHPSGRAPLSCQSRKQKLQKSHPLL 127
PT G P + R+Q L K H LL
Sbjct: 174 QDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLL 218
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.0 bits (66), Expect = 0.84
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 63 PDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHPSGRAPLSCQSRKQKLQK 122
P L +P P PPA + AP + PA P ++ PS +AP + +
Sbjct: 382 PSPPLSPLATPPPQAPPALALPPLQAPPSPPASPP-LSPLATPSPQAPNALAVHLLQAPF 440
Query: 123 SHPLLPKVQDSPLQYLLSGLSSSPVSPN 150
S P P P+Q S +S PVSP+
Sbjct: 441 SPPPSP-----PVQAPFSPPASPPVSPS 463
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 30.0 bits (66), Expect = 0.84
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 63 PDLDLVTFPSPAPHQPPAFYTICVLAPAARPACPTHITFPEHPSGRAPLSCQSRKQKLQK 122
P L +P P PPA + AP + PA P ++ PS +AP + +
Sbjct: 343 PSPPLSPLATPPPQAPPALALPPLQAPPSPPASPP-LSPLATPSPQAPNALAVHLLQAPF 401
Query: 123 SHPLLPKVQDSPLQYLLSGLSSSPVSPN 150
S P P P+Q S +S PVSP+
Sbjct: 402 SPPPSP-----PVQAPFSPPASPPVSPS 424
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 29.6 bits (65), Expect = 1.1
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 71 PSPAPHQPPAFYTICVLAPAARP--------ACPTHITFPEHPSGRA-----PLSCQSRK 117
PS P PPA LAP++ P A P T PE SG A P + Q
Sbjct: 1373 PSNPPGAPPA-----PLAPSSPPVTALPQDGAAPATSTMPEPASGTASQAGGPGTPQGLT 1427
Query: 118 QKLQKSHPLLPKVQDSPL--QYLLSGLSSSPVSP 149
+L+ S P L + ++PL Q L+ GL+ +P
Sbjct: 1428 SELETSQP-LAETHEAPLAVQPLVVGLAPCTPAP 1460
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 96 PTHITFPEHPSGRAPLSCQSRKQKLQKSHPLLPKVQDSPLQYLLSGLSSSPVSPNHP 152
P +I F P LS S +Q PL+ + +P+Q +SSPV P+HP
Sbjct: 1703 PQNIKFSSAPVPPNALS-SSPAPNIQTGRPLVLSSRATPVQLPSPPCTSSPVVPSHP 1758
>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
Length = 1050
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 102 PEHPSGRAPLSCQSRK----QKLQKSHPLLPKVQDSPLQYLLSGLSSSPVSPNHPLR 154
PEH + L C+ L P LPK PL + S +SP P+H L+
Sbjct: 541 PEHSPRTSGLGCRLHSAPNLSDLHVVRPKLPKPPTDPLGAVFSPPQASPPQPSHGLQ 597
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 28.9 bits (63), Expect = 1.9
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 37 RSWAWGRMVCPG--LLCLSAWLSVQAETPDLDLVTFPSPAPHQPP 79
RSW + CP + L A L Q+ P P PAPH PP
Sbjct: 317 RSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPP 361
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,033,720
Number of Sequences: 37866
Number of extensions: 426289
Number of successful extensions: 1644
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 152
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.