Guide to the Human Genome
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Name: LOC100294185 Sequence: fasta or formatted (157aa) NCBI GI: 239740735
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         14           2
 C cysteine            3.2          5           1
 D aspartate           3.2          5           1
 E glutamate           4.5          7           1
 F phenylalanine       1.9          3           1
 G glycine             5.1          8           1
 H histidine           4.5          7           1
 I isoleucine          1.9          3           1
 K lysine              3.8          6           1
 L leucine            12.1         19           2
 M methionine          1.3          2           1
 N asparagine          0.6          1           1
 P proline            13.4         21           2
 Q glutamine           7.6         12           1
 R arginine            5.1          8           1
 S serine             10.2         16           3
 T threonine           3.8          6           1
 V valine              4.5          7           1
 W tryptophan          3.2          5           2
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
MYO16                 0.029   myosin heavy chain Myr 8 
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.026   retinoblastoma protein-binding zinc finger protein i...
HEYL                  0.026   hairy/enhancer-of-split related with YRPW motif-like ...
C9orf79               0.023   chromosome 9 open reading frame 79 
PER2                  0.023   period 2 
BCL9                  0.023   B-cell CLL/lymphoma 9 
ASB10                 0.023   ankyrin repeat and SOCS box-containing 10 isoform 2...
ASB10                 0.023   ankyrin repeat and SOCS box-containing 10 isoform 1...
YLPM1                 0.019   YLP motif containing 1 
FAM48B1               0.019   hypothetical protein LOC100130302 
MAST4                 0.019   microtubule associated serine/threonine kinase fami...
C7orf26               0.019   hypothetical protein LOC79034 
LOC400558             0.016   PREDICTED: hypothetical protein LOC400558 
LOC100292590          0.016   PREDICTED: hypothetical protein 
LOC400558             0.016   PREDICTED: hypothetical protein LOC400558 
LOC400558             0.016   PREDICTED: hypothetical protein LOC400558 
PHC3                  0.016   polyhomeotic like 3 
P2RY4                 0.016   pyrimidinergic receptor P2Y4 
TAPBP                 0.016   tapasin isoform 1 precursor 
TAPBP                 0.016   tapasin isoform 3 precursor 
TAPBP                 0.016   tapasin isoform 2 precursor 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
WNK2                  0.016   WNK lysine deficient protein kinase 2 
NCOA6                 0.013   nuclear receptor coactivator 6 
ULK1                  0.013   Unc-51-like kinase 1 
SYVN1                 0.013   synoviolin 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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