Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239740722
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740722 PREDICTED: hypothetical protein [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740722 PREDICTED: hypothetical protein [Homo sapiens] 300 3e-82
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 35 0.020
gi|169217959 PREDICTED: similar to hCG2042704, partial [Homo sap... 35 0.020
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 35 0.020
gi|225637489 hypothetical protein LOC54777 [Homo sapiens] 34 0.044
gi|18252045 ADAM metallopeptidase domain 33 isoform alpha prepro... 34 0.044
gi|24041040 ADAM metallopeptidase domain 33 isoform beta preprop... 34 0.044
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 34 0.044
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 34 0.044
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 34 0.044
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 34 0.044
gi|32307177 forkhead box G1 [Homo sapiens] 33 0.057
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 33 0.098
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 32 0.13
gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Hom... 32 0.13
gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo... 32 0.13
gi|146134388 YLP motif containing 1 [Homo sapiens] 32 0.13
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 0.17
gi|239751485 PREDICTED: hypothetical protein isoform 2 [Homo sap... 32 0.17
gi|239751483 PREDICTED: hypothetical protein isoform 1 [Homo sap... 32 0.17
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 32 0.22
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 31 0.28
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 31 0.28
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 31 0.28
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 31 0.28
gi|51468067 Sp5 transcription factor [Homo sapiens] 31 0.28
gi|160707881 formin 2 [Homo sapiens] 31 0.37
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 30 0.49
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 30 0.49
gi|188595687 gamma filamin isoform b [Homo sapiens] 30 0.49
>gi|239740722 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 300 bits (767), Expect = 3e-82
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MYKVECGQIAHAGGDLGCHMQQHWVPDGGPLRSLPVPRGPLGCLVLQLVGTEELVEVAVL 60
MYKVECGQIAHAGGDLGCHMQQHWVPDGGPLRSLPVPRGPLGCLVLQLVGTEELVEVAVL
Sbjct: 1 MYKVECGQIAHAGGDLGCHMQQHWVPDGGPLRSLPVPRGPLGCLVLQLVGTEELVEVAVL 60
Query: 61 HVVSNHAEGVVLHTHAQQPNDVWVLEPRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRP 120
HVVSNHAEGVVLHTHAQQPNDVWVLEPRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRP
Sbjct: 61 HVVSNHAEGVVLHTHAQQPNDVWVLEPRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRP 120
Query: 121 HPPAPPQADQASPPPAYM 138
HPPAPPQADQASPPPAYM
Sbjct: 121 HPPAPPQADQASPPPAYM 138
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 35.0 bits (79), Expect = 0.020
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 35 PVPRGPLGCLVLQLVGTEELVEVAVLHVVSNHAEGVVL----HTHAQQPNDVWVL----E 86
P G L L ++V ++ LV +A+L + A GV+ H + + D ++L
Sbjct: 231 PADLGSLTNLTDEVVRSKLLVSLALLGSEQSEAAGVLYRKLTHLNEGRTGDEFLLPFTMS 290
Query: 87 PRHDLHLF--QEIIPGEQGEAEEECRVGGLHLPPRP-----HPPAPPQADQASPPPAYM 138
H F ++++ E + + GG HLP P HP +PP+ P PA +
Sbjct: 291 SNHRAFSFHQKQVLCQELTQIQSSLNGGGGHLPGLPQASTVHPKSPPRVPSPHPKPALL 349
>gi|169217959 PREDICTED: similar to hCG2042704, partial [Homo
sapiens]
Length = 300
Score = 35.0 bits (79), Expect = 0.020
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 35 PVPRGPLGCLVLQLVGTEELVEVAVLHVVSNHAEGVVL----HTHAQQPNDVWVL----E 86
P G L L ++V ++ LV +A+L + A GV+ H + + D ++L
Sbjct: 20 PADLGSLTNLTDEVVRSKLLVSLALLGSEQSEAAGVLYRKLTHLNEGRTGDEFLLPFTMS 79
Query: 87 PRHDLHLF--QEIIPGEQGEAEEECRVGGLHLPPRP-----HPPAPPQADQASPPPAYM 138
H F ++++ E + + GG HLP P HP +PP+ P PA +
Sbjct: 80 SNHRAFSFHQKQVLCQELTQIQSSLNGGGGHLPGLPQASTVHPKSPPRVPSPHPKPALL 138
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 35.0 bits (79), Expect = 0.020
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 35 PVPRGPLGCLVLQLVGTEELVEVAVLHVVSNHAEGVVL----HTHAQQPNDVWVL----E 86
P G L L ++V ++ LV +A+L + A GV+ H + + D ++L
Sbjct: 231 PADLGSLTNLTDEVVRSKLLVSLALLGSEQSEAAGVLYRKLTHLNEGRTGDEFLLPFTMS 290
Query: 87 PRHDLHLF--QEIIPGEQGEAEEECRVGGLHLPPRP-----HPPAPPQADQASPPPAYM 138
H F ++++ E + + GG HLP P HP +PP+ P PA +
Sbjct: 291 SNHRAFSFHQKQVLCQELTQIQSSLNGGGGHLPGLPQASTVHPKSPPRVPSPHPKPALL 349
>gi|225637489 hypothetical protein LOC54777 [Homo sapiens]
Length = 2441
Score = 33.9 bits (76), Expect = 0.044
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 74 THAQQPNDVWVLEPRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASP 133
+H Q VW P H + +P G +G LP PH PAP + Q +
Sbjct: 2301 SHHAQLGPVWAAAPSHRVVQAWTCLPSAAGAPALASALGSAPLPTHPHLPAPIPSSQLAL 2360
Query: 134 P 134
P
Sbjct: 2361 P 2361
>gi|18252045 ADAM metallopeptidase domain 33 isoform alpha
preproprotein [Homo sapiens]
Length = 813
Score = 33.9 bits (76), Expect = 0.044
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 23 HWVPDGGPLRSL----PVPRGPLGCLVLQLVGTEELVEVAVLHVVSNHAEGVVLHTHAQQ 78
HWV DG P R++ PV + +G + L+ G E L+E+ H + A G + TH
Sbjct: 43 HWVLDGQPWRTVSLEEPVSKPDMGLVALEAEGQELLLELEKNHRLL--APGYI-ETHYGP 99
Query: 79 PNDVWVLEPRHDLH 92
VL P H H
Sbjct: 100 DGQPVVLAPNHTDH 113
>gi|24041040 ADAM metallopeptidase domain 33 isoform beta
preproprotein [Homo sapiens]
Length = 787
Score = 33.9 bits (76), Expect = 0.044
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 23 HWVPDGGPLRSL----PVPRGPLGCLVLQLVGTEELVEVAVLHVVSNHAEGVVLHTHAQQ 78
HWV DG P R++ PV + +G + L+ G E L+E+ H + A G + TH
Sbjct: 43 HWVLDGQPWRTVSLEEPVSKPDMGLVALEAEGQELLLELEKNHRLL--APGYI-ETHYGP 99
Query: 79 PNDVWVLEPRHDLH 92
VL P H H
Sbjct: 100 DGQPVVLAPNHTDH 113
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.044
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 99 PGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASPPP 135
P QG + R G L+L P P PP P +A PPP
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPP 177
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.044
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 99 PGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASPPP 135
P QG + R G L+L P P PP P +A PPP
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPP 177
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 33.9 bits (76), Expect = 0.044
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 99 PGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASPPP 135
P QG + R G L+L P P PP P +A PPP
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPP 177
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 33.9 bits (76), Expect = 0.044
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 116 LPPRPHPPAPPQADQASPP 134
LPP P PPAPPQ Q PP
Sbjct: 211 LPPPPQPPAPPQQQQPPPP 229
Score = 26.9 bits (58), Expect = 5.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 117 PPRPHPPAPPQADQASPPP 135
PP P PP PP Q PP
Sbjct: 209 PPLPPPPQPPAPPQQQQPP 227
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 33.5 bits (75), Expect = 0.057
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 117 PPRPHPPAPPQADQASPPP 135
PP P PP PPQ Q PPP
Sbjct: 60 PPAPQPPPPPQQQQPPPPP 78
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 32.7 bits (73), Expect = 0.098
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 99 PGEQGEAEEECRV-GGLHLPPRPHPPAPP 126
P E+ E EE+ + GGL LPP P PP PP
Sbjct: 542 PAEEEEDEEDGQEPGGLALPPPPPPPPPP 570
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 32.3 bits (72), Expect = 0.13
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 117 PPRPHPPAPPQADQASPPPA 136
PP+ PP PP AD PPPA
Sbjct: 1077 PPQQQPPPPPPADGVPPPPA 1096
>gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Homo
sapiens]
Length = 742
Score = 32.3 bits (72), Expect = 0.13
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 59 VLHVVSNHAEGVVLHTHAQQP-----NDVWVLEPRHDLHL--------FQEIIPGEQGEA 105
VLHV+ NH+ G+ L A+ W+L LHL F + GE+GE
Sbjct: 58 VLHVLPNHSVGISLGQGAEPGPGPGLGTAWLLGDNPPLHLRDLSPYISFVSLEDGEEGEE 117
Query: 106 EEE 108
EEE
Sbjct: 118 EEE 120
>gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo
sapiens]
Length = 703
Score = 32.3 bits (72), Expect = 0.13
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 59 VLHVVSNHAEGVVLHTHAQQP-----NDVWVLEPRHDLHL--------FQEIIPGEQGEA 105
VLHV+ NH+ G+ L A+ W+L LHL F + GE+GE
Sbjct: 58 VLHVLPNHSVGISLGQGAEPGPGPGLGTAWLLGDNPPLHLRDLSPYISFVSLEDGEEGEE 117
Query: 106 EEE 108
EEE
Sbjct: 118 EEE 120
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 32.3 bits (72), Expect = 0.13
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 112 GGLHLPPRPHPPAPPQA-DQASPPPAY 137
G H PP P PP PP A +ASP P Y
Sbjct: 10 GSSHYPPPPVPPPPPVALPEASPGPGY 36
Score = 26.6 bits (57), Expect = 7.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 92 HLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQ-----ADQASPPP 135
HL Q + + + +C + HLPP P PP P D PPP
Sbjct: 57 HLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPP 105
Score = 26.2 bits (56), Expect = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 117 PPRPHPPAPPQADQASPPP 135
PP P PP PP PPP
Sbjct: 1542 PPVPIPPPPPPPPLPPPPP 1560
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.0 bits (71), Expect = 0.17
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 117 PPRPHPPAPPQADQASPPP 135
PP P PPAPPQ PPP
Sbjct: 22 PPPPPPPAPPQQQPPPPPP 40
Score = 27.3 bits (59), Expect = 4.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 117 PPRPHPPAPPQADQASPP 134
PP P PPAPP +PP
Sbjct: 35 PPPPPPPAPPPGPGPAPP 52
>gi|239751485 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 122
Score = 32.0 bits (71), Expect = 0.17
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 112 GGLHLPPRPHPPAPPQADQASPP 134
GG+HL P+P PP PP + + P
Sbjct: 69 GGVHLTPQPEPPPPPPSPACAAP 91
>gi|239751483 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 122
Score = 32.0 bits (71), Expect = 0.17
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 112 GGLHLPPRPHPPAPPQADQASPP 134
GG+HL P+P PP PP + + P
Sbjct: 69 GGVHLTPQPEPPPPPPSPACAAP 91
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 31.6 bits (70), Expect = 0.22
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 104 EAEEECR-VGGLHLPPR---PHPPAPPQADQASPPP 135
EA EE + VG H+ + P P+PP AD SPPP
Sbjct: 20 EAREEVQLVGASHMEQKATAPEAPSPPSADVNSPPP 55
Score = 26.2 bits (56), Expect = 9.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 117 PPRPHPPAPPQADQASPPP 135
PP PP+P A +A PPP
Sbjct: 928 PPPGPPPSPAAAPEAVPPP 946
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 31.2 bits (69), Expect = 0.28
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 99 PGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASPPPAYM 138
P E+ EA++ G P +P PP PP PPPA++
Sbjct: 164 PREEDEAKQLALAG--LFPYQPPPPPPPSHPHPHPPPAHL 201
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 31.2 bits (69), Expect = 0.28
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 77 QQPNDVWVLEPRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASPPP 135
QQPN H + + PG ++ G HLPP P PP P A PPP
Sbjct: 1642 QQPNSHQQHSVAHVVGPVHAVTPGSHIHSQ----TAGHHLPPPPPPPGP--APHHHPPP 1694
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 31.2 bits (69), Expect = 0.28
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 77 QQPNDVWVLEPRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASPPP 135
QQPN H + + PG ++ G HLPP P PP P A PPP
Sbjct: 1642 QQPNSHQQHSVAHVVGPVHAVTPGSHIHSQ----TAGHHLPPPPPPPGP--APHHHPPP 1694
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 31.2 bits (69), Expect = 0.28
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 85 LEPRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQ--------ADQASPPP 135
L PR ++++ +Q ++ + G PP P PP+PPQ A QA PPP
Sbjct: 643 LPPRFQRQQQEQLLKQQQQHQWQQHQQGSA--PPTPVPPSPPQPVTLGAVPAPQAPPPP 699
>gi|51468067 Sp5 transcription factor [Homo sapiens]
Length = 398
Score = 31.2 bits (69), Expect = 0.28
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 116 LPPRPHPPAPPQADQASPPPA 136
LPP P PP PP Q SP PA
Sbjct: 163 LPPPPPPPPPPTCRQLSPNPA 183
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 30.8 bits (68), Expect = 0.37
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 113 GLHLPPRPHPPAPPQADQASPPP 135
G+ +PP P PP PP PPP
Sbjct: 1214 GMGIPPAPAPPLPPPGTGIPPPP 1236
Score = 26.2 bits (56), Expect = 9.2
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 112 GGLHLPPRPH---PPAPPQADQASPPP 135
G L LPP P PP PP A PPP
Sbjct: 930 GILPLPPLPGAGIPPPPPLPGAAIPPP 956
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 30.4 bits (67), Expect = 0.49
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 110 RVGGLHLPPRPHPPAPPQADQASPPP 135
+ G PP+P PP PP PPP
Sbjct: 373 QAGSQQPPPQPQPPPPPPPASQQPPP 398
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 118 PRPHPPAPPQADQASPPP 135
P+P PP PP + Q PPP
Sbjct: 383 PQPPPPPPPASQQPPPPP 400
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 30.4 bits (67), Expect = 0.49
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 110 RVGGLHLPPRPHPPAPPQADQASPPP 135
+ G PP+P PP PP PPP
Sbjct: 357 QAGSQQPPPQPQPPPPPPPASQQPPP 382
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 118 PRPHPPAPPQADQASPPP 135
P+P PP PP + Q PPP
Sbjct: 367 PQPPPPPPPASQQPPPPP 384
>gi|188595687 gamma filamin isoform b [Homo sapiens]
Length = 2692
Score = 30.4 bits (67), Expect = 0.49
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 30 PLRSLPVPRGPLGCLVLQLVGTEELVEVAVLHVVSNHAEGVV---LHTHAQQPNDVWVLE 86
P+ SL L LQ G + + + A V N A GV+ +HT + + +V E
Sbjct: 2367 PVASLSDDARRLTVTSLQETGLK-VNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSE 2425
Query: 87 PRHDLHLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQADQASPP 134
D H + IP E G + + G H+P P + QA P
Sbjct: 2426 LDSDKHTIR-FIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDP 2472
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,919,510
Number of Sequences: 37866
Number of extensions: 441490
Number of successful extensions: 6142
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 4560
Number of HSP's gapped (non-prelim): 1448
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.