Guide to the Human Genome
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Name: C10orf92 Sequence: fasta or formatted (2441aa) NCBI GI: 225637489
Description:

hypothetical protein LOC54777

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7        261           4
 C cysteine            2.2         54           2
 D aspartate           3.9         95           2
 E glutamate           8.4        205           3
 F phenylalanine       2.3         57           3
 G glycine             5.8        141           3
 H histidine           2.9         70           2
 I isoleucine          3.0         73           2
 K lysine              5.8        142           3
 L leucine            13.4        328           4
 M methionine          2.0         50           1
 N asparagine          2.3         57           2
 P proline             5.0        122           3
 Q glutamine           5.4        132           3
 R arginine            6.0        146           2
 S serine              7.1        173           3
 T threonine           4.2        103           3
 V valine              6.0        147           2
 W tryptophan          1.7         42           1
 Y tyrosine            1.8         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54777 
SFRS12                0.006   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.006   splicing factor, arginine/serine-rich 12 isoform b [...
TAF3                  0.006   RNA polymerase II transcription factor TAFII140 [Ho...
LOC100133698          0.005   PREDICTED: hypothetical protein 
RNF20                 0.005   ring finger protein 20 
KIAA0182              0.005   genetic suppressor element 1 isoform 2 
KIAA0182              0.005   genetic suppressor element 1 isoform 1 
TOP1                  0.005   DNA topoisomerase I 
CHD2                  0.005   chromodomain helicase DNA binding protein 2 isoform...
RBM25                 0.005   RNA binding motif protein 25 
BAT2D1                0.005   HBxAg transactivated protein 2 
AP3D1                 0.004   adaptor-related protein complex 3, delta 1 subunit ...
LOC100294364          0.004   PREDICTED: hypothetical protein 
IK                    0.004   RED protein 
LOC100286959          0.004   PREDICTED: hypothetical protein XP_002343921 
TNFRSF10C             0.004   tumor necrosis factor receptor superfamily, member 1...
HP1BP3                0.004   HP1-BP74 
LOC100133599          0.004   PREDICTED: hypothetical protein 
ATN1                  0.004   atrophin-1 
ATN1                  0.004   atrophin-1 
UPF2                  0.004   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.004   UPF2 regulator of nonsense transcripts homolog [Homo...
ZC3H13                0.004   zinc finger CCCH-type containing 13 
MYST4                 0.004   MYST histone acetyltransferase (monocytic leukemia)...
PHF14                 0.004   PHD finger protein 14 isoform 2 
PHF14                 0.004   PHD finger protein 14 isoform 1 
LOC100133599          0.004   PREDICTED: hypothetical protein 
LOC100134067          0.004   PREDICTED: hypothetical protein 
TBC1D10B              0.004   TBC1 domain family, member 10B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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