Guide to the Human Genome
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Name: LOC100294203 Sequence: fasta or formatted (138aa) NCBI GI: 239740722
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         10           1
 C cysteine            2.9          4           1
 D aspartate           3.6          5           1
 E glutamate           8.7         12           3
 F phenylalanine       0.7          1           1
 G glycine            10.1         14           2
 H histidine           8.0         11           1
 I isoleucine          2.2          3           2
 K lysine              0.7          1           1
 L leucine            10.9         15           1
 M methionine          2.2          3           1
 N asparagine          1.4          2           1
 P proline            13.0         18           3
 Q glutamine           7.2         10           2
 R arginine            3.6          5           1
 S serine              2.2          3           1
 T threonine           1.4          2           1
 V valine             10.9         15           2
 W tryptophan          1.4          2           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC646396             0.036   PREDICTED: similar to hCG2042704 
LOC100133447          0.036   PREDICTED: similar to hCG2042704, partial 
LOC646396             0.036   PREDICTED: similar to hCG2042704 
C10orf92              0.033   hypothetical protein LOC54777 
ADAM33                0.033   ADAM metallopeptidase domain 33 isoform alpha prepro...
ADAM33                0.033   ADAM metallopeptidase domain 33 isoform beta preprop...
LOC646862             0.033   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.033   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.033   PREDICTED: hypothetical protein LOC646862 
SAMD1                 0.033   sterile alpha motif domain containing 1 
FOXG1                 0.029   forkhead box G1 
LOC65998              0.029   hypothetical protein LOC65998 
SMARCC1               0.025   SWI/SNF-related matrix-associated actin-dependent r...
ZMYND15               0.025   zinc finger, MYND-type containing 15 isoform 1 [Hom...
ZMYND15               0.025   zinc finger, MYND-type containing 15 isoform 2 [Homo...
YLPM1                 0.025   YLP motif containing 1 
HCN2                  0.025   hyperpolarization activated cyclic nucleotide-gated...
LOC100294404          0.025   PREDICTED: hypothetical protein isoform 2 
LOC100294404          0.025   PREDICTED: hypothetical protein isoform 1 
ZFPM1                 0.025   zinc finger protein, multitype 1 
CEBPA                 0.022   CCAAT/enhancer binding protein alpha 
MLL5                  0.022   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.022   myeloid/lymphoid or mixed-lineage leukemia 5 
BAT2                  0.022   HLA-B associated transcript-2 
SP5                   0.022   Sp5 transcription factor 
FMN2                  0.022   formin 2 
CRTC1                 0.018   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.018   mucoepidermoid carcinoma translocated 1 isoform 1 [...
FLNC                  0.018   gamma filamin isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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