Guide to the Human Genome
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Name: LOC100294404 Sequence: fasta or formatted (122aa) NCBI GI: 239751483
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {122aa} PREDICTED: hypothetical protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         10           2
 C cysteine            2.5          3           1
 D aspartate           4.9          6           1
 E glutamate           7.4          9           1
 F phenylalanine       2.5          3           1
 G glycine             9.8         12           2
 H histidine           1.6          2           1
 I isoleucine          1.6          2           1
 K lysine              3.3          4           1
 L leucine             4.1          5           1
 M methionine          1.6          2           1
 N asparagine          0.8          1           1
 P proline            18.9         23           6
 Q glutamine           4.1          5           1
 R arginine           12.3         15           2
 S serine              7.4          9           1
 T threonine           2.5          3           1
 V valine              3.3          4           1
 W tryptophan          2.5          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100294404          1.000   PREDICTED: hypothetical protein isoform 2 
SETD1A                0.070   SET domain containing 1A 
SCARF2                0.062   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.062   scavenger receptor class F, member 2 isoform 2 [Homo...
BAI1                  0.062   brain-specific angiogenesis inhibitor 1 precursor [...
FMN1                  0.062   formin 1 
PRB1                  0.058   proline-rich protein BstNI subfamily 1 isoform 1 pre...
DIAPH3                0.058   diaphanous homolog 3 isoform b 
DIAPH3                0.058   diaphanous homolog 3 isoform a 
PRB2                  0.058   proline-rich protein BstNI subfamily 2 
PRR12                 0.058   proline rich 12 
BAT2                  0.058   HLA-B associated transcript-2 
ZFHX3                 0.053   AT-binding transcription factor 1 
PRB1                  0.053   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.053   proline-rich protein BstNI subfamily 1 isoform 2 pre...
WAS                   0.053   Wiskott-Aldrich syndrome protein 
LOC645321             0.049   PREDICTED: hypothetical protein 
LOC645321             0.049   PREDICTED: hypothetical protein 
LOC100127930          0.049   PREDICTED: hypothetical protein 
FHDC1                 0.049   FH2 domain containing 1 
PTPN23                0.049   protein tyrosine phosphatase, non-receptor type 23 [...
MARCH11               0.049   membrane-associated ring finger (C3HC4) 11 
LMOD2                 0.049   leiomodin 2 (cardiac) 
MAPK1IP1L             0.049   MAPK-interacting and spindle-stabilizing protein [Ho...
C10orf47              0.045   hypothetical protein LOC254427 
LOC100293662          0.045   PREDICTED: hypothetical protein 
LOC100289444          0.045   PREDICTED: hypothetical protein 
LOC100289444          0.045   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.045   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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