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Search of human proteins with 239582751
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239582751 sterile alpha motif domain containing 4 isoform 3
[Homo sapiens]
(345 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239582751 sterile alpha motif domain containing 4 isoform 3 [... 696 0.0
gi|239582749 sterile alpha motif domain containing 4 isoform 2 [... 606 e-173
gi|239582747 sterile alpha motif domain containing 4 isoform 1 [... 606 e-173
gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] 315 4e-86
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 38 0.015
gi|66392146 RNA U, small nuclear RNA export adaptor (phosphoryla... 37 0.026
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 34 0.22
gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Ho... 33 0.29
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 33 0.29
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 33 0.29
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.37
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 33 0.49
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 33 0.49
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi... 32 0.64
gi|37577148 NCK interacting protein with SH3 domain isoform 2 [H... 32 0.64
gi|117938759 GNAS complex locus XLas [Homo sapiens] 32 0.64
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 32 0.83
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 32 0.83
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 32 0.83
gi|27734915 hypothetical protein LOC170393 [Homo sapiens] 32 0.83
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 32 1.1
gi|153792074 proline rich 12 [Homo sapiens] 32 1.1
gi|239049540 FCH domain only 1 isoform c [Homo sapiens] 31 1.4
gi|239049457 FCH domain only 1 isoform b [Homo sapiens] 31 1.4
gi|29789054 FCH domain only 1 isoform b [Homo sapiens] 31 1.4
gi|239049440 FCH domain only 1 isoform a [Homo sapiens] 31 1.4
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 31 1.4
gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens] 31 1.9
gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens] 31 1.9
gi|27262638 sperm associated antigen 1 [Homo sapiens] 31 1.9
>gi|239582751 sterile alpha motif domain containing 4 isoform 3
[Homo sapiens]
Length = 345
Score = 696 bits (1797), Expect = 0.0
Identities = 345/345 (100%), Positives = 345/345 (100%)
Query: 1 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 60
MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG
Sbjct: 1 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 60
Query: 61 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 120
GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL
Sbjct: 61 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 120
Query: 121 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 180
IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG
Sbjct: 121 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 180
Query: 181 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 240
GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS
Sbjct: 181 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 240
Query: 241 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGWLSLSGAPSMPAL 300
NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGWLSLSGAPSMPAL
Sbjct: 241 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGWLSLSGAPSMPAL 300
Query: 301 TVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 345
TVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI
Sbjct: 301 TVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 345
>gi|239582749 sterile alpha motif domain containing 4 isoform 2
[Homo sapiens]
Length = 629
Score = 606 bits (1562), Expect = e-173
Identities = 309/345 (89%), Positives = 309/345 (89%), Gaps = 36/345 (10%)
Query: 1 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 60
MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG
Sbjct: 321 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 380
Query: 61 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 120
GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL
Sbjct: 381 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 440
Query: 121 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 180
IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG
Sbjct: 441 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 500
Query: 181 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 240
GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS
Sbjct: 501 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 560
Query: 241 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGWLSLSGAPSMPAL 300
NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQP
Sbjct: 561 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQP---------------------------- 592
Query: 301 TVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 345
EFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI
Sbjct: 593 --------EFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 629
>gi|239582747 sterile alpha motif domain containing 4 isoform 1
[Homo sapiens]
Length = 717
Score = 606 bits (1562), Expect = e-173
Identities = 309/345 (89%), Positives = 309/345 (89%), Gaps = 36/345 (10%)
Query: 1 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 60
MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG
Sbjct: 409 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 468
Query: 61 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 120
GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL
Sbjct: 469 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 528
Query: 121 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 180
IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG
Sbjct: 529 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 588
Query: 181 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 240
GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS
Sbjct: 589 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 648
Query: 241 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGWLSLSGAPSMPAL 300
NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQP
Sbjct: 649 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQP---------------------------- 680
Query: 301 TVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 345
EFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI
Sbjct: 681 --------EFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 717
>gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]
Length = 694
Score = 315 bits (807), Expect = 4e-86
Identities = 181/357 (50%), Positives = 218/357 (61%), Gaps = 60/357 (16%)
Query: 1 MILTPIKAYS-------SPSTTPEARRREPQAPRQPSLMGP-----ESQSPDCKDGAAAT 48
+I+TPIKAYS + +TTP A+ P P P P + + KD A
Sbjct: 386 IIITPIKAYSVLQATVAAATTTPTAKDGAPGEPPLPGAEPPLAHPGTDKGTEAKDPPAVE 445
Query: 49 GATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEEN 108
P+ + G +P A AP+ +GD+P QFTRVMGKVCTQLLVSRPDEEN
Sbjct: 446 NYPPPPAPAPTDGSEP----------APAPVADGDIPSQFTRVMGKVCTQLLVSRPDEEN 495
Query: 109 ISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQ 168
I+SYLQLI+KCL HEAFTETQKKRLLSWKQQV KL R+FPRK L++ YRQQ+ FG
Sbjct: 496 ITSYLQLIEKCLTHEAFTETQKKRLLSWKQQVLKLLRTFPRKAALEMQNYRQQKGWAFG- 554
Query: 169 SNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQG 228
SNSLP AGSVG G+ RR RQ+ +P R +P R+GLL SG + R+ +P++ QG
Sbjct: 555 SNSLPIAGSVGMGVARRTQRQFPMPPRALPPGRMGLLSPSGIGGVSPRHALTSPSLGGQG 614
Query: 229 RQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGW 288
RQNLWFANPGGSNSMPS++ SSVQRT SLPVH+SPQ +LMF
Sbjct: 615 RQNLWFANPGGSNSMPSQSRSSVQRTHSLPVHSSPQAILMF------------------- 655
Query: 289 LSLSGAPSMPALTVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 345
P P +P + +IN LESLCLSMTEHALGDG D+TSTI
Sbjct: 656 -----PPDCP-------------VPGPDLEINPTLESLCLSMTEHALGDGTDKTSTI 694
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 37.7 bits (86), Expect = 0.015
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 12 PSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSCD 71
P E R R P+ PR+ G E +SPD A+ A P A S L +
Sbjct: 367 PGEDEERRERSPEGPREEEAAGGEEESPDSSPHGEASRGAAEPEAQLSNHLAEEGPAEGS 426
Query: 72 GELA 75
GE A
Sbjct: 427 GEAA 430
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 12 PSTTPEARRREPQAPRQPSLMGPESQSPDCKDGA--AATGATATPSAGASG 60
P PE + P +P G E++ P+ +GA A GA A AG G
Sbjct: 14 PQGPPEVPAPLAERPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVKEAGGGG 64
>gi|66392146 RNA U, small nuclear RNA export adaptor
(phosphorylation regulated) [Homo sapiens]
Length = 394
Score = 37.0 bits (84), Expect = 0.026
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 60 GGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDE--ENISSYLQLID 117
G ++ QLS D ++ VAP D P Q +V+G +S Y +
Sbjct: 6 GDMEDGQLSDSDSDMTVAP---SDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAVES 62
Query: 118 KCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGS 177
E+F+++ L WK++ QK F P+ FGQS+ P
Sbjct: 63 VDSSEESFSDSDDDSCL-WKRKRQKCFNPPPKPEPFQ-----------FGQSSQKP---P 107
Query: 178 VGGGMGRRN--PRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQ 230
V GG N Q +++ + LG+LG G + ++++ T + K+ R+
Sbjct: 108 VAGGKKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRK 162
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.9 bits (76), Expect = 0.22
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 23/104 (22%)
Query: 10 SSPSTTPEARRREPQAPRQPS--------LMGPESQSPDCKDGAAATG-------ATATP 54
SSP+ + + R P+AP PS + P +P KD A A G AT +P
Sbjct: 241 SSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP 300
Query: 55 SAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQ 98
SA S P L P P P Q T +G Q
Sbjct: 301 SAPPSPSAPP--------SLQTLPSPPATPPSQATTSLGSPTLQ 336
Score = 30.0 bits (66), Expect = 3.2
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 5 PIKA-YSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGL- 62
P++A +S P++ P + P + PSL P Q P + +ATP A L
Sbjct: 408 PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA 467
Query: 63 -QPHQLSS---------CDGELAVAPLPEGDLPGQ 87
P QL+ L P P PGQ
Sbjct: 468 APPLQLAKPPPQAPPALATPPLQALPSPPASFPGQ 502
Score = 28.5 bits (62), Expect = 9.2
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 11 SPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSS 69
SP TP PQAP P+L P Q+P + ATPS A L H L +
Sbjct: 348 SPLATPP-----PQAP--PALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQA 399
>gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Homo
sapiens]
Length = 722
Score = 33.5 bits (75), Expect = 0.29
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 26/130 (20%)
Query: 153 LDISGYRQQRN---RGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSG 209
LD + RQ GF + +SLP++ +G G Q +PS +P
Sbjct: 126 LDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLY---QIPLPSSQIPPQ--------- 173
Query: 210 FVSSNQRNTTATPTIMKQGRQNLWFANPGGSNSMPS-----RTHSSVQRTRSLPVHTSPQ 264
TT P + ++ R+ L + GG N+MPS + SSV T ++TS
Sbjct: 174 --PRRAAPTTPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSS 231
Query: 265 NMLMFQQPGS 274
+PGS
Sbjct: 232 P----SEPGS 237
>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.5 bits (75), Expect = 0.29
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 11 SPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSC 70
+PS+T + R P AP P+ S SP G A+ A A+P+ QP QLS
Sbjct: 217 TPSSTTSSTRATP-APSAPAAASATSPSPAPSSGNGASTA-ASPT-------QPIQLSDL 267
Query: 71 DGELAVAPLPEGDLPGQFTRVMG----KVCTQLLVSRPDEENISSYL 113
LA +P G GQ + ++ +L + +E + YL
Sbjct: 268 QSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYL 314
>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.5 bits (75), Expect = 0.29
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 11 SPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSC 70
+PS+T + R P AP P+ S SP G A+ A A+P+ QP QLS
Sbjct: 217 TPSSTTSSTRATP-APSAPAAASATSPSPAPSSGNGASTA-ASPT-------QPIQLSDL 267
Query: 71 DGELAVAPLPEGDLPGQFTRVMG----KVCTQLLVSRPDEENISSYL 113
LA +P G GQ + ++ +L + +E + YL
Sbjct: 268 QSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYL 314
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.1 bits (74), Expect = 0.37
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 20/84 (23%)
Query: 9 YSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSA------GASGGL 62
Y+SPS TP P AP P G P A+GA + P A GA+ G+
Sbjct: 196 YTSPSATP-----RPPAPGPPQSRGTSPLQPGSYPEYQASGADSWPPAAENSFPGANFGV 250
Query: 63 QPHQLSSCDGELAVAPLPEGDLPG 86
P + P+P+G PG
Sbjct: 251 PPAE---------PEPIPKGSRPG 265
Score = 30.4 bits (67), Expect = 2.4
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 11 SPSTTPEARRREPQA-----PRQPSLMGPESQSPDCKDGAAATGA-----TATPSAGASG 60
SPS T RE QA P+L G SP C +G T + TP G SG
Sbjct: 2302 SPSNTARLGHREGQAVTAVPTEPPTLQGAGPDSPACLEGEMGTSSKEPEDPGTPETGRSG 2361
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 32.7 bits (73), Expect = 0.49
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 155 ISGYRQQRNRGFGQSNSLPTAGSVGG-----------GMGRRNPRQYQIPSRNVPSARLG 203
++ Y++ RN F + P G+ GG + IPS N P ++G
Sbjct: 2067 LATYQENRNTCFSPDHKQPQPGTAGGMRVSVSSKGSISTPNSPVKMTLIPSPNSPFQKVG 2126
Query: 204 LLGTSGFVSSNQRNTTATPTIMKQGRQN 231
L +S S+Q +T T+ Q N
Sbjct: 2127 KLASSDTGESDQSSTETDSTVKSQEESN 2154
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 32.7 bits (73), Expect = 0.49
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 4 TPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQ 63
TP + S P +P + R+P+ P L S P +D G ++ + S G
Sbjct: 972 TPQQGASGPGRSPVGQARQPEKPSHLHL-EKASSWPHRRDSGRPPGDSSGQAVAPSEGAN 1030
Query: 64 PHQLSSCDGELAVAPLPEGDLPGQFTRV---MGKVCTQLLVSRPDEENISSYLQLIDKC- 119
H+ S G + LPEG + V G T + + +E + + + K
Sbjct: 1031 KHKGWSRQGLRRPSILPEGSSDSRGPAVEKHPGPSDTVVFREKKPKEVMGGFSRRCSKLI 1090
Query: 120 ----LIHEAFTETQKKRLLSWKQQVQKLFRS-------FPRKTLLDISGYRQQ 161
L+++ +++ + + +Q+++ L + PRK L+ Y Q+
Sbjct: 1091 NSSQLLYQEYSDVVLNKEIQSQQRLESLSETPGPSSPRQPRKALVSSESYLQR 1143
>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
sapiens]
Length = 862
Score = 32.3 bits (72), Expect = 0.64
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 12 PSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAA-----TGATATPSAGASGGL-QPH 65
PS P R P PR+P+ + + DG++ T S GA+ GL P
Sbjct: 209 PSRPPRPSRPPPPTPRRPASVNGSPSATSESDGSSTGSLPPTNTNTNTSEGATSGLIIPL 268
Query: 66 QLSSCDGELAVAPLPEGDLP 85
+S G + P+ + LP
Sbjct: 269 TISGGSGPRPLNPVTQAPLP 288
>gi|37577148 NCK interacting protein with SH3 domain isoform 2 [Homo
sapiens]
Length = 715
Score = 32.3 bits (72), Expect = 0.64
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 33/130 (25%)
Query: 153 LDISGYRQQRN---RGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSG 209
LD + RQ GF + +SLP++ +G G YQIP + +A
Sbjct: 126 LDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGL-----YQIPPQPRRAAP-------- 172
Query: 210 FVSSNQRNTTATPTIMKQGRQNLWFANPGGSNSMPS-----RTHSSVQRTRSLPVHTSPQ 264
TT P + ++ R+ L + GG N+MPS + SSV T ++TS
Sbjct: 173 --------TTPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSS 224
Query: 265 NMLMFQQPGS 274
+PGS
Sbjct: 225 P----SEPGS 230
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 32.3 bits (72), Expect = 0.64
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 13 STTPEARRREPQAPRQPSLMG--PESQSPDCKDGAAATGATATPSA---GASGGLQPHQL 67
S +P P QPSL G P + P G A P+ GA G +P
Sbjct: 93 SYSPPPEEAMPFEAEQPSLGGFWPTLEQPGFPSGVHAGLEAFGPALMEPGAFSGARP--- 149
Query: 68 SSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPD 105
G +P PE +P +F + + C+QLL+ PD
Sbjct: 150 ----GLGGYSPPPEEAMPFEFDQPAQRGCSQLLLQVPD 183
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 32.0 bits (71), Expect = 0.83
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 148 PRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSR------NVPSAR 201
P D+SG R Q G G+ + G +G R PR + P R VP R
Sbjct: 90 PEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGR 149
Query: 202 LG-LLGTSGFVSSNQR----NTTATPTIMKQGRQNLWF------ANPGGSNSMPSRTHSS 250
+ TSG S R + +P + Q L + A+PGG N+ T +
Sbjct: 150 VAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDA 209
Query: 251 VQRTRS 256
+R RS
Sbjct: 210 RRRARS 215
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 32.0 bits (71), Expect = 0.83
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 148 PRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSR------NVPSAR 201
P D+SG R Q G G+ + G +G R PR + P R VP R
Sbjct: 90 PEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGR 149
Query: 202 LG-LLGTSGFVSSNQR----NTTATPTIMKQGRQNLWF------ANPGGSNSMPSRTHSS 250
+ TSG S R + +P + Q L + A+PGG N+ T +
Sbjct: 150 VAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDA 209
Query: 251 VQRTRS 256
+R RS
Sbjct: 210 RRRARS 215
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 32.0 bits (71), Expect = 0.83
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 148 PRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSR------NVPSAR 201
P D+SG R Q G G+ + G +G R PR + P R VP R
Sbjct: 90 PEPRTRDLSGARGQTTGGEGREGAQTREGKMGLPDSARRPRAPRTPLRPERPAPGVPGGR 149
Query: 202 LG-LLGTSGFVSSNQR----NTTATPTIMKQGRQNLWF------ANPGGSNSMPSRTHSS 250
+ TSG S R + +P + Q L + A+PGG N+ T +
Sbjct: 150 VAPCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDA 209
Query: 251 VQRTRS 256
+R RS
Sbjct: 210 RRRARS 215
>gi|27734915 hypothetical protein LOC170393 [Homo sapiens]
Length = 145
Score = 32.0 bits (71), Expect = 0.83
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 4 TPIKAYSSPSTTPEARRREPQAPRQPSL---MGPESQSPDCKDGAAATGATATPSAGASG 60
+PI P TT R+PQ P P+ P S PD + A + + AS
Sbjct: 65 SPISHQGQPQTTRALSLRQPQHPSAPASGRPRPPHSSGPDLAEAAPVVDQASQAAGRASS 124
Query: 61 GL 62
GL
Sbjct: 125 GL 126
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 31.6 bits (70), Expect = 1.1
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 183 GRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGSNS 242
G + Q +P+ + L + +SG +S+ Q + TA+ + Q L A G +
Sbjct: 422 GNMSTLQKTVPASGAMTTSLMTVPSSGVMSTEQMSATASRVMSAQ----LTMAKTSG--A 475
Query: 243 MPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGWLSLSGAPSMPALTV 302
MP+ + +V + + + + + P S S +T + S SMP LTV
Sbjct: 476 MPTGSMKAVAKQYKRATASGKMSTPLRRAPTSGAMSTQPVT-----ATASETMSMPQLTV 530
Query: 303 PKS---SQGEFQLPVTEPDINNRLESLCLSMTEHA 334
P S S + + PV+E ++ ++ +T A
Sbjct: 531 PASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAA 565
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 4 TPIKAYSS--PSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGG 61
TP K S P TPE EP AP +PSL+ P + + K+ SG
Sbjct: 1705 TPEKTTSEKPPEQTPETAMPEPPAPEKPSLLRPVEKEKE-KEKVTRGERPLRGERATSGR 1763
Query: 62 LQPHQLSSCDGELAVAPLPE 81
+ S G+ A + LP+
Sbjct: 1764 QTRPERSLATGQPATSRLPK 1783
>gi|239049540 FCH domain only 1 isoform c [Homo sapiens]
Length = 839
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 5 PIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSP-DCKD--GAAATGATATPSAGASGG 61
P + S+P T+ A R + + +L GP +S D +D G+++ G T++PS +S
Sbjct: 359 PQRPRSAPRTSSCAERLQSEEQVSKNLFGPPLESAFDHEDFTGSSSLGFTSSPSPFSSSS 418
Query: 62 LQPHQLSSCDGELAVAPLPEGD 83
+ + S D AP P D
Sbjct: 419 PENVEDSGLDSPSHAAPGPSPD 440
>gi|239049457 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 5 PIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSP-DCKD--GAAATGATATPSAGASGG 61
P + S+P T+ A R + + +L GP +S D +D G+++ G T++PS +S
Sbjct: 409 PQRPRSAPRTSSCAERLQSEEQVSKNLFGPPLESAFDHEDFTGSSSLGFTSSPSPFSSSS 468
Query: 62 LQPHQLSSCDGELAVAPLPEGD 83
+ + S D AP P D
Sbjct: 469 PENVEDSGLDSPSHAAPGPSPD 490
>gi|29789054 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 5 PIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSP-DCKD--GAAATGATATPSAGASGG 61
P + S+P T+ A R + + +L GP +S D +D G+++ G T++PS +S
Sbjct: 409 PQRPRSAPRTSSCAERLQSEEQVSKNLFGPPLESAFDHEDFTGSSSLGFTSSPSPFSSSS 468
Query: 62 LQPHQLSSCDGELAVAPLPEGD 83
+ + S D AP P D
Sbjct: 469 PENVEDSGLDSPSHAAPGPSPD 490
>gi|239049440 FCH domain only 1 isoform a [Homo sapiens]
Length = 891
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 5 PIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSP-DCKD--GAAATGATATPSAGASGG 61
P + S+P T+ A R + + +L GP +S D +D G+++ G T++PS +S
Sbjct: 409 PQRPRSAPRTSSCAERLQSEEQVSKNLFGPPLESAFDHEDFTGSSSLGFTSSPSPFSSSS 468
Query: 62 LQPHQLSSCDGELAVAPLPEGD 83
+ + S D AP P D
Sbjct: 469 PENVEDSGLDSPSHAAPGPSPD 490
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 31.2 bits (69), Expect = 1.4
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 16 PEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSCDGELA 75
P+ ++ P P PE SPD G A + G PH A
Sbjct: 7001 PQGSKQLPSTGGHPGTAQPERPSPDSPWGQPAPFCHPKQGSAPQEGCSPHP--------A 7052
Query: 76 VAPLPEGDLP 85
VAP P G P
Sbjct: 7053 VAPCPPGSFP 7062
>gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens]
Length = 713
Score = 30.8 bits (68), Expect = 1.9
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 32 MGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSCDGE---LAVAPLPEGDLPGQF 88
MGP S D ++ AAA GA A +AGA+G L QL L+ P D G
Sbjct: 1 MGPPSPGDDEEEAAAAAGAPA--AAGATGDLASAQLGGAPNRWEVLSATPTTIKDEAGNL 58
Query: 89 TRV 91
++
Sbjct: 59 VQI 61
>gi|24025682 F-box and leucine-rich repeat protein 16 [Homo
sapiens]
Length = 479
Score = 30.8 bits (68), Expect = 1.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 8 AYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQP 64
A S TP + R Q P P+L P +P + AA G TP+ G + L P
Sbjct: 32 AASITKGTPATKNRPCQPPPPPTLPPPSLAAPLSR--AALAGGPCTPAGGPASALAP 86
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 30.8 bits (68), Expect = 1.9
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 20 RREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQ-PHQLSSCDGELAVAP 78
R PQ + P G + +SP AAA G AT G G + P L S EL +
Sbjct: 401 RGAPQRGQTPEA-GADKRSPRRASAAAAAGGGATGHPGGGQGAENPAGLKSQGNELFRS- 458
Query: 79 LPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLI 116
GQF GK + + P I+ L ++
Sbjct: 459 -------GQFAEAAGKYSAAIALLEPAGSEIADDLSIL 489
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,272,402
Number of Sequences: 37866
Number of extensions: 778760
Number of successful extensions: 3133
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 3040
Number of HSP's gapped (non-prelim): 207
length of query: 345
length of database: 18,247,518
effective HSP length: 103
effective length of query: 242
effective length of database: 14,347,320
effective search space: 3472051440
effective search space used: 3472051440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.