Guide to the Human Genome
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Name: SAMD4A Sequence: fasta or formatted (717aa) NCBI GI: 239582747
Description:

sterile alpha motif domain containing 4 isoform 1

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [629aa] sterile alpha motif domain containing 4 isoform 2
alt prot [345aa] sterile alpha motif domain containing 4 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         42           3
 C cysteine            1.7         12           1
 D aspartate           3.8         27           2
 E glutamate           5.6         40           2
 F phenylalanine       2.1         15           1
 G glycine             7.3         52           3
 H histidine           3.5         25           2
 I isoleucine          3.9         28           2
 K lysine              4.0         29           2
 L leucine            11.2         80           3
 M methionine          2.6         19           2
 N asparagine          4.5         32           2
 P proline             6.3         45           2
 Q glutamine           7.5         54           2
 R arginine            6.1         44           3
 S serine             11.0         79           4
 T threonine           6.1         44           2
 V valine              3.9         28           1
 W tryptophan          1.4         10           1
 Y tyrosine            1.7         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterile alpha motif domain containing 4 isoform 1 [... 
SAMD4B                0.562   sterile alpha motif domain containing 4B 
SAMD4A                0.532   sterile alpha motif domain containing 4 isoform 2 [...
SAMD4A                0.408   sterile alpha motif domain containing 4 isoform 3 [...
ZCCHC14               0.018   zinc finger, CCHC domain containing 14 
CLIC6                 0.009   chloride intracellular channel 6 
PHAX                  0.008   RNA U, small nuclear RNA export adaptor (phosphoryla...
FLJ22184              0.008   PREDICTED: hypothetical protein LOC80164 
RP1L1                 0.008   retinitis pigmentosa 1-like 1 
TP63                  0.007   tumor protein p63 isoform 3 
TP63                  0.007   tumor protein p63 isoform 2 
TP63                  0.007   tumor protein p63 isoform 1 
TP63                  0.007   tumor protein p63 isoform 6 
TP63                  0.007   tumor protein p63 isoform 5 
TP63                  0.007   tumor protein p63 isoform 4 
MICAL3                0.007   microtubule associated monoxygenase, calponin and L...
WNK1                  0.006   WNK lysine deficient protein kinase 1 
TTC23                 0.006   tetratricopeptide repeat domain 23 
TTC23                 0.006   tetratricopeptide repeat domain 23 
TTC23                 0.006   tetratricopeptide repeat domain 23 
TTC23                 0.006   tetratricopeptide repeat domain 23 
TTC23                 0.006   tetratricopeptide repeat domain 23 
TTC23                 0.006   tetratricopeptide repeat domain 23 
TTC23                 0.006   tetratricopeptide repeat domain 23 
KIAA1210              0.006   hypothetical protein LOC57481 
ADRM1                 0.006   adhesion regulating molecule 1 precursor 
ADRM1                 0.006   adhesion regulating molecule 1 precursor 
NCKIPSD               0.006   NCK interacting protein with SH3 domain isoform 1 [Ho...
ZNF469                0.006   zinc finger protein 469 
TTC28                 0.006   tetratricopeptide repeat domain 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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