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Search of human proteins with 239582749
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239582749 sterile alpha motif domain containing 4 isoform 2
[Homo sapiens]
(629 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239582749 sterile alpha motif domain containing 4 isoform 2 [... 1268 0.0
gi|239582747 sterile alpha motif domain containing 4 isoform 1 [... 783 0.0
gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] 617 e-177
gi|239582751 sterile alpha motif domain containing 4 isoform 3 [... 606 e-173
gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens] 54 4e-07
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 38 0.032
gi|66392146 RNA U, small nuclear RNA export adaptor (phosphoryla... 37 0.055
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 36 0.094
gi|169234659 tumor protein p63 isoform 3 [Homo sapiens] 35 0.16
gi|169234657 tumor protein p63 isoform 2 [Homo sapiens] 35 0.16
gi|31543818 tumor protein p63 isoform 1 [Homo sapiens] 35 0.16
gi|169234665 tumor protein p63 isoform 6 [Homo sapiens] 35 0.27
gi|169234663 tumor protein p63 isoform 5 [Homo sapiens] 35 0.27
gi|169234661 tumor protein p63 isoform 4 [Homo sapiens] 35 0.27
gi|209862789 microtubule associated monoxygenase, calponin and L... 35 0.27
gi|98961156 tetratricopeptide repeat domain 23 [Homo sapiens] 34 0.47
gi|98961154 tetratricopeptide repeat domain 23 [Homo sapiens] 34 0.47
gi|98961152 tetratricopeptide repeat domain 23 [Homo sapiens] 34 0.47
gi|98961150 tetratricopeptide repeat domain 23 [Homo sapiens] 34 0.47
gi|98961148 tetratricopeptide repeat domain 23 [Homo sapiens] 34 0.47
gi|98961143 tetratricopeptide repeat domain 23 [Homo sapiens] 34 0.47
gi|98961146 tetratricopeptide repeat domain 23 [Homo sapiens] 34 0.47
gi|154090979 hypothetical protein LOC57481 [Homo sapiens] 34 0.47
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 33 0.61
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 33 0.61
gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Ho... 33 0.79
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.79
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 33 1.0
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 33 1.0
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi... 32 1.4
>gi|239582749 sterile alpha motif domain containing 4 isoform 2
[Homo sapiens]
Length = 629
Score = 1268 bits (3280), Expect = 0.0
Identities = 629/629 (100%), Positives = 629/629 (100%)
Query: 1 MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLERE 60
MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLERE
Sbjct: 1 MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLERE 60
Query: 61 ANSPGIINQWQQESKDKVISLLLTHLPLLKPGNLDAKVEYMKLLPKILAHSIEHNQHIEE 120
ANSPGIINQWQQESKDKVISLLLTHLPLLKPGNLDAKVEYMKLLPKILAHSIEHNQHIEE
Sbjct: 61 ANSPGIINQWQQESKDKVISLLLTHLPLLKPGNLDAKVEYMKLLPKILAHSIEHNQHIEE 120
Query: 121 SRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSTSFGGQNRGRSDSVDYGQTHYYHQRQ 180
SRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSTSFGGQNRGRSDSVDYGQTHYYHQRQ
Sbjct: 121 SRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSTSFGGQNRGRSDSVDYGQTHYYHQRQ 180
Query: 181 NSDDKLNGWQNSRDSGICINASNWQDKSMGCENGHVPLYSSSSVPTTINTIGTSTSTNVP 240
NSDDKLNGWQNSRDSGICINASNWQDKSMGCENGHVPLYSSSSVPTTINTIGTSTSTNVP
Sbjct: 181 NSDDKLNGWQNSRDSGICINASNWQDKSMGCENGHVPLYSSSSVPTTINTIGTSTSTNVP 240
Query: 241 AWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLKERQNLLKS 300
AWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLKERQNLLKS
Sbjct: 241 AWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLKERQNLLKS 300
Query: 301 LERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPD 360
LERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPD
Sbjct: 301 LERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPD 360
Query: 361 CKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLL 420
CKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLL
Sbjct: 361 CKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLL 420
Query: 421 VSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQ 480
VSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQ
Sbjct: 421 VSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQ 480
Query: 481 QRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTA 540
QRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTA
Sbjct: 481 QRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTA 540
Query: 541 TPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPEFQLPVTE 600
TPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPEFQLPVTE
Sbjct: 541 TPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPEFQLPVTE 600
Query: 601 PDINNRLESLCLSMTEHALGDGVDRTSTI 629
PDINNRLESLCLSMTEHALGDGVDRTSTI
Sbjct: 601 PDINNRLESLCLSMTEHALGDGVDRTSTI 629
>gi|239582747 sterile alpha motif domain containing 4 isoform 1
[Homo sapiens]
Length = 717
Score = 783 bits (2021), Expect = 0.0
Identities = 391/392 (99%), Positives = 392/392 (100%)
Query: 238 NVPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLKERQNL 297
+VPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLKERQNL
Sbjct: 326 DVPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLKERQNL 385
Query: 298 LKSLERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQ 357
LKSLERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQ
Sbjct: 386 LKSLERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQ 445
Query: 358 SPDCKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCT 417
SPDCKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCT
Sbjct: 446 SPDCKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCT 505
Query: 418 QLLVSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISG 477
QLLVSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISG
Sbjct: 506 QLLVSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISG 565
Query: 478 YRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRN 537
YRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRN
Sbjct: 566 YRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRN 625
Query: 538 TTATPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPEFQLP 597
TTATPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPEFQLP
Sbjct: 626 TTATPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPEFQLP 685
Query: 598 VTEPDINNRLESLCLSMTEHALGDGVDRTSTI 629
VTEPDINNRLESLCLSMTEHALGDGVDRTSTI
Sbjct: 686 VTEPDINNRLESLCLSMTEHALGDGVDRTSTI 717
Score = 487 bits (1254), Expect = e-137
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLERE 60
MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLERE
Sbjct: 1 MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLERE 60
Query: 61 ANSPGIINQWQQESKDKVISLLLTHLPLLKPGNLDAKVEYMKLLPKILAHSIEHNQHIEE 120
ANSPGIINQWQQESKDKVISLLLTHLPLLKPGNLDAKVEYMKLLPKILAHSIEHNQHIEE
Sbjct: 61 ANSPGIINQWQQESKDKVISLLLTHLPLLKPGNLDAKVEYMKLLPKILAHSIEHNQHIEE 120
Query: 121 SRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSTSFGGQNRGRSDSVDYGQTHYYHQRQ 180
SRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSTSFGGQNRGRSDSVDYGQTHYYHQRQ
Sbjct: 121 SRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSTSFGGQNRGRSDSVDYGQTHYYHQRQ 180
Query: 181 NSDDKLNGWQNSRDSGICINASNWQDKSMGCENGHVPLYSSSSVPTTINTIGTSTST 237
NSDDKLNGWQNSRDSGICINASNWQDKSMGCENGHVPLYSSSSVPTTINTIGTSTST
Sbjct: 181 NSDDKLNGWQNSRDSGICINASNWQDKSMGCENGHVPLYSSSSVPTTINTIGTSTST 237
>gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]
Length = 694
Score = 617 bits (1592), Expect = e-177
Identities = 359/709 (50%), Positives = 443/709 (62%), Gaps = 96/709 (13%)
Query: 1 MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLERE 60
MFRDQVG+LAGWFKGWNECEQTVALLSLLKRV++TQARFLQLCLEHSLADC ++H+LE E
Sbjct: 2 MFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLESE 61
Query: 61 ANSPGIINQWQQESKDKVISLLLTHLPLLKPGNLDAKVEYMKLLPKIL------------ 108
ANS I++QWQQESK+KV+SLLL+HLPLL+PGN +AK EYM+LL K+L
Sbjct: 62 ANSAAIVSQWQQESKEKVVSLLLSHLPLLQPGNTEAKSEYMRLLQKVLAYSIESNAFIEE 121
Query: 109 -----AHSIEHNQHIEESRQLLSYALIH------------PATSLEDRSALAMWLNHLED 151
++++ H E R L+ L H P S R W E
Sbjct: 122 SRQLLSYALIHPATTLEDRNALALWLSHLEERLASGFRSRPEPSYHSRQGSDEWGGPAE- 180
Query: 152 RTSTSFGGQNRGRSDSVDYGQTHY-YHQRQNSDDKLNGWQNSRDSGICINA--------- 201
G G D H +H + +N ++ ++G+
Sbjct: 181 ---LGPGEAGPGWQDKPPRENGHVPFHPSSSVPPAINSIGSNANTGLPCQIHPSPLKRSM 237
Query: 202 ----------SNWQD-KSMGCENG-----HVPLYSSSSVPTT----INTIGTSTST---- 237
W + +G H PL SSV ++ G+S +T
Sbjct: 238 SLIPTSPQVPGEWPSPEELGARAAFTTPDHAPLSPQSSVASSGSEQTEEQGSSRNTFQED 297
Query: 238 -----NVPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLK 292
+VP+WLKSLRLHKYAALFSQM+YEEMM LTE LE+QNVTKGARHKI +SIQKL+
Sbjct: 298 GSGMKDVPSWLKSLRLHKYAALFSQMSYEEMMTLTEQHLESQNVTKGARHKIALSIQKLR 357
Query: 293 ERQNLLKSLERDIIEGGSLRIPLQELHQMILTPIKAYS-------SPSTTPEARRREPQA 345
ERQ++LKSLE+D++EGG+LR LQEL Q+I+TPIKAYS + +TTP A+ P
Sbjct: 358 ERQSVLKSLEKDVLEGGNLRNALQELQQIIITPIKAYSVLQATVAAATTTPTAKDGAPGE 417
Query: 346 PRQPSLMGP-----ESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLP 400
P P P + + KD A P+ + G +P A AP+
Sbjct: 418 PPLPGAEPPLAHPGTDKGTEAKDPPAVENYPPPPAPAPTDGSEP----------APAPVA 467
Query: 401 EGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQV 460
+GD+P QFTRVMGKVCTQLLVSRPDEENI+SYLQLI+KCL HEAFTETQKKRLLSWKQQV
Sbjct: 468 DGDIPSQFTRVMGKVCTQLLVSRPDEENITSYLQLIEKCLTHEAFTETQKKRLLSWKQQV 527
Query: 461 QKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSA 520
KL R+FPRK L++ YRQQ+ FG SNSLP AGSVG G+ RR RQ+ +P R +P
Sbjct: 528 LKLLRTFPRKAALEMQNYRQQKGWAFG-SNSLPIAGSVGMGVARRTQRQFPMPPRALPPG 586
Query: 521 RLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQRTRSLPVH 580
R+GLL SG + R+ +P++ QGRQNLWFANPGGSNSMPS++ SSVQRT SLPVH
Sbjct: 587 RMGLLSPSGIGGVSPRHALTSPSLGGQGRQNLWFANPGGSNSMPSQSRSSVQRTHSLPVH 646
Query: 581 TSPQNMLMFQQPEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 629
+SPQ +LMF P+ +P + +IN LESLCLSMTEHALGDG D+TSTI
Sbjct: 647 SSPQAILMF-PPDCPVPGPDLEINPTLESLCLSMTEHALGDGTDKTSTI 694
>gi|239582751 sterile alpha motif domain containing 4 isoform 3
[Homo sapiens]
Length = 345
Score = 606 bits (1562), Expect = e-173
Identities = 309/345 (89%), Positives = 309/345 (89%), Gaps = 36/345 (10%)
Query: 321 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 380
MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG
Sbjct: 1 MILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASG 60
Query: 381 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 440
GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL
Sbjct: 61 GLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLIDKCL 120
Query: 441 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 500
IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG
Sbjct: 121 IHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGSVGG 180
Query: 501 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 560
GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS
Sbjct: 181 GMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQNLWFANPGGS 240
Query: 561 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQP---------------------------- 592
NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQP
Sbjct: 241 NSMPSRTHSSVQRTRSLPVHTSPQNMLMFQQPGSQVHSGLCLTDLRGWLSLSGAPSMPAL 300
Query: 593 --------EFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 629
EFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI
Sbjct: 301 TVPKSSQGEFQLPVTEPDINNRLESLCLSMTEHALGDGVDRTSTI 345
>gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens]
Length = 949
Score = 53.9 bits (128), Expect = 4e-07
Identities = 73/288 (25%), Positives = 119/288 (41%), Gaps = 23/288 (7%)
Query: 224 VPTTINTIGTSTSTNVPAWLKSLRLHKYAALFSQMTYEEMMALTECQL-EAQNVTKGARH 282
+P+++ T T + WL+ LRLHKY +F Q++ E+ ++LTE L + +++T GA+
Sbjct: 286 MPSSLQTPQTQEQNGILDWLRKLRLHKYYPVFKQLSMEKFLSLTEEDLNKFESLTMGAKK 345
Query: 283 KIVISIQKLK---ERQNLLKSLERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEAR 339
K+ ++ K ER+ L S + G R+P H + + + E
Sbjct: 346 KLKTQLELEKEKSERRCLNPSAPPLVTSSGVARVP-PTSHVGPVQSGRGSHAAELRVEVE 404
Query: 340 RREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPL 399
+ Q PR+ S S S G A ++ + ++ H L S D E V
Sbjct: 405 QPHHQLPREGS-SSEYSSSSSSPMGVQAREESSDSAEENDRRVEIH-LESSDKEKPVM-- 460
Query: 400 PEGDLPGQFTRVMGKVCTQLL-VSRPDEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQ 458
L FT + Q+L V N S + L + L A + R+L+
Sbjct: 461 ----LLNHFTSSSARPTAQVLPVQNEASSNPSGHHPLPPQML--SAASHITPIRMLN--- 511
Query: 459 QVQKLFRSFPRKTLLDISGYR----QQRNRGFGQSNSLPTAGSVGGGM 502
V K R LL S + ++RN+G G +S+ S G M
Sbjct: 512 SVHKPERGSADMKLLSSSVHSLLSLEERNKGSGPRSSMKVDKSFGSAM 559
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 37.7 bits (86), Expect = 0.032
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 332 PSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSCD 391
P E R R P+ PR+ G E +SPD A+ A P A S L +
Sbjct: 367 PGEDEERRERSPEGPREEEAAGGEEESPDSSPHGEASRGAAEPEAQLSNHLAEEGPAEGS 426
Query: 392 GELA 395
GE A
Sbjct: 427 GEAA 430
Score = 30.8 bits (68), Expect = 3.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 332 PSTTPEARRREPQAPRQPSLMGPESQSPDCKDGA--AATGATATPSAGASG 380
P PE + P +P G E++ P+ +GA A GA A AG G
Sbjct: 14 PQGPPEVPAPLAERPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVKEAGGGG 64
>gi|66392146 RNA U, small nuclear RNA export adaptor
(phosphorylation regulated) [Homo sapiens]
Length = 394
Score = 37.0 bits (84), Expect = 0.055
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 380 GGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRPDE--ENISSYLQLID 437
G ++ QLS D ++ VAP D P Q +V+G +S Y +
Sbjct: 6 GDMEDGQLSDSDSDMTVAP---SDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAVES 62
Query: 438 KCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRGFGQSNSLPTAGS 497
E+F+++ L WK++ QK F P+ FGQS+ P
Sbjct: 63 VDSSEESFSDSDDDSCL-WKRKRQKCFNPPPKPEPFQ-----------FGQSSQKP---P 107
Query: 498 VGGGMGRRN--PRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTIMKQGRQ 550
V GG N Q +++ + LG+LG G + ++++ T + K+ R+
Sbjct: 108 VAGGKKINNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRK 162
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 36.2 bits (82), Expect = 0.094
Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 20/123 (16%)
Query: 308 GGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMG-----PESQSPDCK 362
GG L+ P TP+ + + + R P P QP G P +P K
Sbjct: 222 GGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRK 281
Query: 363 DGAAATG-------ATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKV 415
D A A G AT +PSA S P L P P P Q T +G
Sbjct: 282 DAAPALGPLSSSPLATPSPSAPPSPSAPP--------SLQTLPSPPATPPSQATTSLGSP 333
Query: 416 CTQ 418
Q
Sbjct: 334 TLQ 336
Score = 30.0 bits (66), Expect = 6.7
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 325 PIKA-YSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGL- 382
P++A +S P++ P + P + PSL P Q P + +ATP A L
Sbjct: 408 PVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA 467
Query: 383 -QPHQLSS---------CDGELAVAPLPEGDLPGQ 407
P QL+ L P P PGQ
Sbjct: 468 APPLQLAKPPPQAPPALATPPLQALPSPPASFPGQ 502
Score = 29.6 bits (65), Expect = 8.8
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 315 LQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATP 374
LQ H + +P SP TP PQAP P+L P Q+P + ATP
Sbjct: 335 LQATHSFLPSPPL---SPLATPP-----PQAP--PALALPPLQAPPSPPASPPLSPLATP 384
Query: 375 SAGASGGLQPHQLSS 389
S A L H L +
Sbjct: 385 SPQAPNALAVHLLQA 399
>gi|169234659 tumor protein p63 isoform 3 [Homo sapiens]
Length = 487
Score = 35.4 bits (80), Expect = 0.16
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 279 GARHKIVISIQKLKERQN--------------LLKSLERDIIEGGSLRIPLQELH-QMIL 323
GA +KI IS+ ++ + + LL S+++ I G S P H Q +
Sbjct: 84 GATNKIEISMDCIRMQDSDLSDPMWPQYTNLGLLNSMDQQIQNGSSSTSPYNTDHAQNSV 143
Query: 324 TPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPS 375
T Y+ PS+T +A P P GP S + + A AT T S
Sbjct: 144 TAPSPYAQPSSTFDALSPSPAIPSNTDYPGPHSFDVSFQQSSTAKSATWTYS 195
>gi|169234657 tumor protein p63 isoform 2 [Homo sapiens]
Length = 555
Score = 35.4 bits (80), Expect = 0.16
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 279 GARHKIVISIQKLKERQN--------------LLKSLERDIIEGGSLRIPLQELH-QMIL 323
GA +KI IS+ ++ + + LL S+++ I G S P H Q +
Sbjct: 84 GATNKIEISMDCIRMQDSDLSDPMWPQYTNLGLLNSMDQQIQNGSSSTSPYNTDHAQNSV 143
Query: 324 TPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPS 375
T Y+ PS+T +A P P GP S + + A AT T S
Sbjct: 144 TAPSPYAQPSSTFDALSPSPAIPSNTDYPGPHSFDVSFQQSSTAKSATWTYS 195
>gi|31543818 tumor protein p63 isoform 1 [Homo sapiens]
Length = 680
Score = 35.4 bits (80), Expect = 0.16
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 279 GARHKIVISIQKLKERQN--------------LLKSLERDIIEGGSLRIPLQELH-QMIL 323
GA +KI IS+ ++ + + LL S+++ I G S P H Q +
Sbjct: 84 GATNKIEISMDCIRMQDSDLSDPMWPQYTNLGLLNSMDQQIQNGSSSTSPYNTDHAQNSV 143
Query: 324 TPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPS 375
T Y+ PS+T +A P P GP S + + A AT T S
Sbjct: 144 TAPSPYAQPSSTFDALSPSPAIPSNTDYPGPHSFDVSFQQSSTAKSATWTYS 195
>gi|169234665 tumor protein p63 isoform 6 [Homo sapiens]
Length = 393
Score = 34.7 bits (78), Expect = 0.27
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 297 LLKSLERDIIEGGSLRIPLQELH-QMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPE 355
LL S+++ I G S P H Q +T Y+ PS+T +A P P GP
Sbjct: 22 LLNSMDQQIQNGSSSTSPYNTDHAQNSVTAPSPYAQPSSTFDALSPSPAIPSNTDYPGPH 81
Query: 356 SQSPDCKDGAAATGATATPS 375
S + + A AT T S
Sbjct: 82 SFDVSFQQSSTAKSATWTYS 101
>gi|169234663 tumor protein p63 isoform 5 [Homo sapiens]
Length = 461
Score = 34.7 bits (78), Expect = 0.27
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 297 LLKSLERDIIEGGSLRIPLQELH-QMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPE 355
LL S+++ I G S P H Q +T Y+ PS+T +A P P GP
Sbjct: 22 LLNSMDQQIQNGSSSTSPYNTDHAQNSVTAPSPYAQPSSTFDALSPSPAIPSNTDYPGPH 81
Query: 356 SQSPDCKDGAAATGATATPS 375
S + + A AT T S
Sbjct: 82 SFDVSFQQSSTAKSATWTYS 101
>gi|169234661 tumor protein p63 isoform 4 [Homo sapiens]
Length = 586
Score = 34.7 bits (78), Expect = 0.27
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 297 LLKSLERDIIEGGSLRIPLQELH-QMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPE 355
LL S+++ I G S P H Q +T Y+ PS+T +A P P GP
Sbjct: 22 LLNSMDQQIQNGSSSTSPYNTDHAQNSVTAPSPYAQPSSTFDALSPSPAIPSNTDYPGPH 81
Query: 356 SQSPDCKDGAAATGATATPS 375
S + + A AT T S
Sbjct: 82 SFDVSFQQSSTAKSATWTYS 101
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 34.7 bits (78), Expect = 0.27
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 289 QKLKERQNLLKSLE-RDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPR 347
++++ R+ +KS RD + R+ EL P KA S+PS + + R P +P
Sbjct: 1595 ERMRAREKSVKSQALRDAMARQLSRMQQMELASGAPRPRKASSAPS---QGKERRPDSPT 1651
Query: 348 QPSLMGPESQSPDCKDGAAATGATATPSAGASGG 381
+P+L G S+ P K A + + PS SGG
Sbjct: 1652 RPTLRG--SEEPTLKHEATSEEVLSPPS--DSGG 1681
>gi|98961156 tetratricopeptide repeat domain 23 [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.47
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 17 NECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEREANSPGIINQWQQESKD 76
N ++ VA +S+ R + Q + LQ L + +LH+ E +A S ++++Q +
Sbjct: 11 NHLDEVVAAVSITHR-KKFQNKLLQTALFQPPRE--KLHLCEEKAKSYSNSHEYKQAVHE 67
Query: 77 KVISLLLTHLPL------LKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALI 130
V + LT + L +++ Y++L S++ QH E++RQ+L+ +++
Sbjct: 68 LVRCVALTRICYGDSHWKLAEAHVNLAQGYLQLK----GLSLQAKQHAEKARQILANSIV 123
Query: 131 HPATSLEDRSALAMWLNHLEDRTSTS 156
P + D ++ L H R S
Sbjct: 124 PPYSENTDVFKFSIELFHTMGRALLS 149
>gi|98961154 tetratricopeptide repeat domain 23 [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.47
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 17 NECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEREANSPGIINQWQQESKD 76
N ++ VA +S+ R + Q + LQ L + +LH+ E +A S ++++Q +
Sbjct: 11 NHLDEVVAAVSITHR-KKFQNKLLQTALFQPPRE--KLHLCEEKAKSYSNSHEYKQAVHE 67
Query: 77 KVISLLLTHLPL------LKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALI 130
V + LT + L +++ Y++L S++ QH E++RQ+L+ +++
Sbjct: 68 LVRCVALTRICYGDSHWKLAEAHVNLAQGYLQLK----GLSLQAKQHAEKARQILANSIV 123
Query: 131 HPATSLEDRSALAMWLNHLEDRTSTS 156
P + D ++ L H R S
Sbjct: 124 PPYSENTDVFKFSIELFHTMGRALLS 149
>gi|98961152 tetratricopeptide repeat domain 23 [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.47
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 17 NECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEREANSPGIINQWQQESKD 76
N ++ VA +S+ R + Q + LQ L + +LH+ E +A S ++++Q +
Sbjct: 11 NHLDEVVAAVSITHR-KKFQNKLLQTALFQPPRE--KLHLCEEKAKSYSNSHEYKQAVHE 67
Query: 77 KVISLLLTHLPL------LKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALI 130
V + LT + L +++ Y++L S++ QH E++RQ+L+ +++
Sbjct: 68 LVRCVALTRICYGDSHWKLAEAHVNLAQGYLQLK----GLSLQAKQHAEKARQILANSIV 123
Query: 131 HPATSLEDRSALAMWLNHLEDRTSTS 156
P + D ++ L H R S
Sbjct: 124 PPYSENTDVFKFSIELFHTMGRALLS 149
>gi|98961150 tetratricopeptide repeat domain 23 [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.47
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 17 NECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEREANSPGIINQWQQESKD 76
N ++ VA +S+ R + Q + LQ L + +LH+ E +A S ++++Q +
Sbjct: 11 NHLDEVVAAVSITHR-KKFQNKLLQTALFQPPRE--KLHLCEEKAKSYSNSHEYKQAVHE 67
Query: 77 KVISLLLTHLPL------LKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALI 130
V + LT + L +++ Y++L S++ QH E++RQ+L+ +++
Sbjct: 68 LVRCVALTRICYGDSHWKLAEAHVNLAQGYLQLK----GLSLQAKQHAEKARQILANSIV 123
Query: 131 HPATSLEDRSALAMWLNHLEDRTSTS 156
P + D ++ L H R S
Sbjct: 124 PPYSENTDVFKFSIELFHTMGRALLS 149
>gi|98961148 tetratricopeptide repeat domain 23 [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.47
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 17 NECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEREANSPGIINQWQQESKD 76
N ++ VA +S+ R + Q + LQ L + +LH+ E +A S ++++Q +
Sbjct: 11 NHLDEVVAAVSITHR-KKFQNKLLQTALFQPPRE--KLHLCEEKAKSYSNSHEYKQAVHE 67
Query: 77 KVISLLLTHLPL------LKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALI 130
V + LT + L +++ Y++L S++ QH E++RQ+L+ +++
Sbjct: 68 LVRCVALTRICYGDSHWKLAEAHVNLAQGYLQLK----GLSLQAKQHAEKARQILANSIV 123
Query: 131 HPATSLEDRSALAMWLNHLEDRTSTS 156
P + D ++ L H R S
Sbjct: 124 PPYSENTDVFKFSIELFHTMGRALLS 149
>gi|98961143 tetratricopeptide repeat domain 23 [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.47
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 17 NECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEREANSPGIINQWQQESKD 76
N ++ VA +S+ R + Q + LQ L + +LH+ E +A S ++++Q +
Sbjct: 11 NHLDEVVAAVSITHR-KKFQNKLLQTALFQPPRE--KLHLCEEKAKSYSNSHEYKQAVHE 67
Query: 77 KVISLLLTHLPL------LKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALI 130
V + LT + L +++ Y++L S++ QH E++RQ+L+ +++
Sbjct: 68 LVRCVALTRICYGDSHWKLAEAHVNLAQGYLQLK----GLSLQAKQHAEKARQILANSIV 123
Query: 131 HPATSLEDRSALAMWLNHLEDRTSTS 156
P + D ++ L H R S
Sbjct: 124 PPYSENTDVFKFSIELFHTMGRALLS 149
>gi|98961146 tetratricopeptide repeat domain 23 [Homo sapiens]
Length = 447
Score = 33.9 bits (76), Expect = 0.47
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 17 NECEQTVALLSLLKRVSQTQARFLQLCLEHSLADCAELHVLEREANSPGIINQWQQESKD 76
N ++ VA +S+ R + Q + LQ L + +LH+ E +A S ++++Q +
Sbjct: 11 NHLDEVVAAVSITHR-KKFQNKLLQTALFQPPRE--KLHLCEEKAKSYSNSHEYKQAVHE 67
Query: 77 KVISLLLTHLPL------LKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALI 130
V + LT + L +++ Y++L S++ QH E++RQ+L+ +++
Sbjct: 68 LVRCVALTRICYGDSHWKLAEAHVNLAQGYLQLK----GLSLQAKQHAEKARQILANSIV 123
Query: 131 HPATSLEDRSALAMWLNHLEDRTSTS 156
P + D ++ L H R S
Sbjct: 124 PPYSENTDVFKFSIELFHTMGRALLS 149
>gi|154090979 hypothetical protein LOC57481 [Homo sapiens]
Length = 1709
Score = 33.9 bits (76), Expect = 0.47
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 290 KLKERQNLLKSLERDIIEGGSLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQP 349
K + Q + LE+ +EG S + P+ A S + +R AP P
Sbjct: 1163 KRSKVQEMTSRLEKMAVEGTSNKSPIPRRPTQSFVKFMAQQIFSESSALKRGSDVAPLPP 1222
Query: 350 SLMGPESQSPDCKDGAAATGATATPSAGASGGLQP--HQLSS 389
+L P+ K + +A P G S + P H L S
Sbjct: 1223 NLPSKSLSKPEVKHQVFSDSGSANPKGGISSKMLPMKHPLQS 1264
>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.5 bits (75), Expect = 0.61
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 331 SPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSC 390
+PS+T + R P AP P+ S SP G A+ A A+P+ QP QLS
Sbjct: 217 TPSSTTSSTRATP-APSAPAAASATSPSPAPSSGNGASTA-ASPT-------QPIQLSDL 267
Query: 391 DGELAVAPLPEGDLPGQFTRVMG----KVCTQLLVSRPDEENISSYL 433
LA +P G GQ + ++ +L + +E + YL
Sbjct: 268 QSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYL 314
>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.5 bits (75), Expect = 0.61
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 331 SPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQPHQLSSC 390
+PS+T + R P AP P+ S SP G A+ A A+P+ QP QLS
Sbjct: 217 TPSSTTSSTRATP-APSAPAAASATSPSPAPSSGNGASTA-ASPT-------QPIQLSDL 267
Query: 391 DGELAVAPLPEGDLPGQFTRVMG----KVCTQLLVSRPDEENISSYL 433
LA +P G GQ + ++ +L + +E + YL
Sbjct: 268 QSILATMNVPAGPAGGQQVDLASVLTPEIMAPILANADVQERLLPYL 314
>gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Homo
sapiens]
Length = 722
Score = 33.1 bits (74), Expect = 0.79
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 22/118 (18%)
Query: 473 LDISGYRQQRN---RGFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSG 529
LD + RQ GF + +SLP++ +G G Q +PS +P
Sbjct: 126 LDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLY---QIPLPSSQIPPQ--------- 173
Query: 530 FVSSNQRNTTATPTIMKQGRQNLWFANPGGSNSMPS-----RTHSSVQRTRSLPVHTS 582
TT P + ++ R+ L + GG N+MPS + SSV T ++TS
Sbjct: 174 --PRRAAPTTPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTS 229
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.1 bits (74), Expect = 0.79
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 20/84 (23%)
Query: 329 YSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSA------GASGGL 382
Y+SPS TP P AP P G P A+GA + P A GA+ G+
Sbjct: 196 YTSPSATP-----RPPAPGPPQSRGTSPLQPGSYPEYQASGADSWPPAAENSFPGANFGV 250
Query: 383 QPHQLSSCDGELAVAPLPEGDLPG 406
P + P+P+G PG
Sbjct: 251 PPAE---------PEPIPKGSRPG 265
Score = 30.4 bits (67), Expect = 5.1
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 331 SPSTTPEARRREPQA-----PRQPSLMGPESQSPDCKDGAAATGA-----TATPSAGASG 380
SPS T RE QA P+L G SP C +G T + TP G SG
Sbjct: 2302 SPSNTARLGHREGQAVTAVPTEPPTLQGAGPDSPACLEGEMGTSSKEPEDPGTPETGRSG 2361
Score = 29.6 bits (65), Expect = 8.8
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 30/149 (20%)
Query: 263 MMALTECQLEAQNVTKGARHKIVISIQKLKERQNLLKSLERDIIEGGSL-RIPLQELHQM 321
M L+E +LE Q K+V ++ +R + R++ E S+ R+ L
Sbjct: 1526 MSHLSEDELEIQ--------KLVTELESQLQRSKDTRGAPRELAEAESVGRVEL------ 1571
Query: 322 ILTPIKAYSSPSTTPEARRREPQA--PRQPSLMGPE----SQSPDCKDGAAATGATATPS 375
T P ++RR QA P + + + +S ++GA + AT
Sbjct: 1572 ---------GTGTEPPSQRRTCQATVPHEDTFSAADLTRVGESTAHREGAESAVATVEAV 1622
Query: 376 AGASGGLQPHQLSSCDGELAVAPLPEGDL 404
G GG P S G A+ P + DL
Sbjct: 1623 QGRPGGTWPCPASFHPGHAALLPCAQEDL 1651
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 32.7 bits (73), Expect = 1.0
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 475 ISGYRQQRNRGFGQSNSLPTAGSVGG-----------GMGRRNPRQYQIPSRNVPSARLG 523
++ Y++ RN F + P G+ GG + IPS N P ++G
Sbjct: 2067 LATYQENRNTCFSPDHKQPQPGTAGGMRVSVSSKGSISTPNSPVKMTLIPSPNSPFQKVG 2126
Query: 524 LLGTSGFVSSNQRNTTATPTIMKQGRQN 551
L +S S+Q +T T+ Q N
Sbjct: 2127 KLASSDTGESDQSSTETDSTVKSQEESN 2154
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 32.7 bits (73), Expect = 1.0
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 324 TPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATGATATPSAGASGGLQ 383
TP + S P +P + R+P+ P L S P +D G ++ + S G
Sbjct: 972 TPQQGASGPGRSPVGQARQPEKPSHLHL-EKASSWPHRRDSGRPPGDSSGQAVAPSEGAN 1030
Query: 384 PHQLSSCDGELAVAPLPEGDLPGQFTRV---MGKVCTQLLVSRPDEENISSYLQLIDKC- 439
H+ S G + LPEG + V G T + + +E + + + K
Sbjct: 1031 KHKGWSRQGLRRPSILPEGSSDSRGPAVEKHPGPSDTVVFREKKPKEVMGGFSRRCSKLI 1090
Query: 440 ----LIHEAFTETQKKRLLSWKQQVQKLFRS-------FPRKTLLDISGYRQQ 481
L+++ +++ + + +Q+++ L + PRK L+ Y Q+
Sbjct: 1091 NSSQLLYQEYSDVVLNKEIQSQQRLESLSETPGPSSPRQPRKALVSSESYLQR 1143
>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
sapiens]
Length = 862
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 332 PSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAA-----TGATATPSAGASGGL-QPH 385
PS P R P PR+P+ + + DG++ T S GA+ GL P
Sbjct: 209 PSRPPRPSRPPPPTPRRPASVNGSPSATSESDGSSTGSLPPTNTNTNTSEGATSGLIIPL 268
Query: 386 QLSSCDGELAVAPLPEGDLP 405
+S G + P+ + LP
Sbjct: 269 TISGGSGPRPLNPVTQAPLP 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,479,389
Number of Sequences: 37866
Number of extensions: 1230942
Number of successful extensions: 5500
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 5391
Number of HSP's gapped (non-prelim): 191
length of query: 629
length of database: 18,247,518
effective HSP length: 108
effective length of query: 521
effective length of database: 14,157,990
effective search space: 7376312790
effective search space used: 7376312790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.