Guide to the Human Genome
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Name: TTC23 Sequence: fasta or formatted (447aa) NCBI GI: 98961156
Description:

tetratricopeptide repeat domain 23

Referenced in:

Tetratricopeptide Domains

Other entries for this name:
alt mRNA [447aa] tetratricopeptide repeat domain 23
alt mRNA [447aa] tetratricopeptide repeat domain 23
alt mRNA [447aa] tetratricopeptide repeat domain 23
alt mRNA [447aa] tetratricopeptide repeat domain 23
alt mRNA [447aa] tetratricopeptide repeat domain 23
alt mRNA [447aa] tetratricopeptide repeat domain 23
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         50           2
 C cysteine            1.8          8           1
 D aspartate           2.9         13           1
 E glutamate           8.7         39           2
 F phenylalanine       3.4         15           1
 G glycine             4.9         22           2
 H histidine           4.9         22           2
 I isoleucine          4.7         21           2
 K lysine              7.8         35           2
 L leucine            11.0         49           2
 M methionine          1.6          7           1
 N asparagine          2.0          9           1
 P proline             2.7         12           2
 Q glutamine           7.4         33           2
 R arginine            4.9         22           1
 S serine              7.8         35           1
 T threonine           4.5         20           2
 V valine              4.9         22           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 23 
TTC23                 1.000   tetratricopeptide repeat domain 23 
TTC23                 1.000   tetratricopeptide repeat domain 23 
TTC23                 1.000   tetratricopeptide repeat domain 23 
TTC23                 1.000   tetratricopeptide repeat domain 23 
TTC23                 1.000   tetratricopeptide repeat domain 23 
TTC23                 1.000   tetratricopeptide repeat domain 23 
TTC23L                0.140   tetratricopeptide repeat domain 23-like 
NUMA1                 0.014   nuclear mitotic apparatus protein 1 
NPHP3                 0.013   nephrocystin 3 
KLC2                  0.012   kinesin light chain 2 isoform 1 
KLC2                  0.012   kinesin light chain 2 isoform 1 
KLC2                  0.012   kinesin light chain 2 isoform 2 
KLC2                  0.012   kinesin light chain 2 isoform 1 
TTC29                 0.012   tetratricopeptide repeat domain 29 
OGT                   0.012   O-linked GlcNAc transferase isoform 2 
OGT                   0.012   O-linked GlcNAc transferase isoform 1 
KLC3                  0.012   kinesin light chain 3 
SAMD4A                0.011   sterile alpha motif domain containing 4 isoform 2 [...
SAMD4A                0.011   sterile alpha motif domain containing 4 isoform 1 [...
NEB                   0.009   nebulin 
MPRIP                 0.009   myosin phosphatase-Rho interacting protein isoform 2...
MPRIP                 0.009   myosin phosphatase-Rho interacting protein isoform 1...
DDRGK1                0.008   DDRGK domain containing 1 
CEP250                0.008   centrosomal protein 2 
TMTC1                 0.008   transmembrane and tetratricopeptide repeat containin...
INA                   0.007   internexin neuronal intermediate filament protein, a...
GMNN                  0.007   geminin 
KLC1                  0.007   kinesin light chain 1 isoform 3 
KLC1                  0.007   kinesin light chain 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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