Search of human proteins with 239508946

Search of human proteins with 239508946

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239508946 PREDICTED: hypothetical protein [Homo sapiens]
         (179 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171841 PREDICTED: hypothetical protein [Homo sapiens]           366   e-102
gi|169171179 PREDICTED: hypothetical protein [Homo sapiens]           366   e-102
gi|239508946 PREDICTED: hypothetical protein [Homo sapiens]           366   e-102
gi|169171680 PREDICTED: hypothetical protein [Homo sapiens]           343   6e-95
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ...    30   1.1  
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]              30   1.4  
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]      29   2.5  
gi|239745060 PREDICTED: similar to breast cancer anti-estrogen r...    29   2.5  
gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]         29   2.5  
gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]         29   2.5  
gi|33695078 protein phosphatase 2, regulatory subunit B'', beta ...    29   2.5  
gi|116063562 FERM domain containing 4A [Homo sapiens]                  29   2.5  
gi|239754342 PREDICTED: hypothetical protein [Homo sapiens]            28   4.2  
gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precurs...    28   4.2  
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs...    28   4.2  
gi|22749325 zinc finger protein 48 [Homo sapiens]                      28   4.2  
gi|122937420 plasma kallikrein-like protein 4 [Homo sapiens]           28   4.2  
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]        28   4.2  
gi|38176300 nestin [Homo sapiens]                                      28   5.5  
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]    28   5.5  
gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens]            28   5.5  
gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens]            28   5.5  
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     28   5.5  
gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]            27   7.2  
gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]            27   7.2  
gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo ...    27   7.2  
gi|197276670 spermatogenesis and centriole associated 1 isoform ...    27   7.2  
gi|197276668 spermatogenesis and centriole associated 1 isoform ...    27   7.2  
gi|39777614 SS18-like protein 1 [Homo sapiens]                         27   7.2  
gi|41281808 harmonin isoform b3 [Homo sapiens]                         27   9.4  

>gi|169171841 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 179

 Score =  366 bits (940), Expect = e-102
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60
           MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN
Sbjct: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60

Query: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG 120
           ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG
Sbjct: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG 120

Query: 121 SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 179
           SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ
Sbjct: 121 SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 179


>gi|169171179 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 179

 Score =  366 bits (940), Expect = e-102
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60
           MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN
Sbjct: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60

Query: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG 120
           ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG
Sbjct: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG 120

Query: 121 SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 179
           SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ
Sbjct: 121 SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 179


>gi|239508946 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 179

 Score =  366 bits (940), Expect = e-102
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60
           MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN
Sbjct: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60

Query: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG 120
           ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG
Sbjct: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVG 120

Query: 121 SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 179
           SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ
Sbjct: 121 SPHVSAASRSSPPLAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 179


>gi|169171680 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 226

 Score =  343 bits (879), Expect = 6e-95
 Identities = 178/226 (78%), Positives = 179/226 (79%), Gaps = 47/226 (20%)

Query: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60
           MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN
Sbjct: 1   MRLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSN 60

Query: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFL---------------------------- 92
           ILNYKSKLGNYSKRASSRGSKPGHWPAACTFL                            
Sbjct: 61  ILNYKSKLGNYSKRASSRGSKPGHWPAACTFLFRKGLTKADSKETQVPPPPATLHLPHPQ 120

Query: 93  -------------------SHPPERTAPHLRGPVASGLPRGLRVSVGSPHVSAASRSSPP 133
                              +HPPERTAPHLRGPVASGLPRGLRVSVGSPHVSAASRSSPP
Sbjct: 121 FCLGPRPIPQISPGTPHPAAHPPERTAPHLRGPVASGLPRGLRVSVGSPHVSAASRSSPP 180

Query: 134 LAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 179
           LAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ
Sbjct: 181 LAGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATPRRFQ 226


>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
           sapiens]
          Length = 278

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 77  SRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVGSPHVSAASRSSPPLAG 136
           SR S P   P A +   HP        RGP A     G     GS      +++SP   G
Sbjct: 139 SRSSGP---PRARSCAPHPAREGMATTRGPEAGLRVSGRGARAGSSTAPTRAQASPARPG 195

Query: 137 FCFHLLISQSTASYLAYEGLDLRKPSWITAAR 168
           F   L      AS  A+     R  +W TA +
Sbjct: 196 FPPCLRSPPCPASSRAFRSCLSRAKAWDTAGQ 227


>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
          Length = 2639

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 66  SKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLP 112
           S +  +S++ S  G +PG+W  A + +S    +T P     + SG P
Sbjct: 266 STVAEFSRQCSHAGGRPGNWRTATSAVSPGASKTCPGNLVYLESGSP 312


>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
          Length = 2382

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 46  RGPGLLTAGRVFNSNILNYKSKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRG 105
           +G  + T  RV +   ++Y    G+  ++A S G+ PGH P+     S P     P    
Sbjct: 659 QGSSVFTESRVSSQQTVSY----GSQHEQAHSTGTVPGHIPSTVQAQSQPHGVYPP---S 711

Query: 106 PVASGLPRGLRVSVGSPHVSAASRSSP 132
            VA G  +G      S  ++  S S P
Sbjct: 712 SVAQGQSQG---QPSSSSLTGVSSSQP 735


>gi|239745060 PREDICTED: similar to breast cancer anti-estrogen
           resistance 1 [Homo sapiens]
          Length = 353

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 34/125 (27%), Positives = 42/125 (33%), Gaps = 14/125 (11%)

Query: 12  RVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSNILNYKSKLGNY 71
           +V +S  TR   G +    CA   +P C     L  P  L          L Y S     
Sbjct: 193 QVPSSMDTRSWEGTKPPAKCASVSSPRCLPPRGLGSPSFL----------LIYLSPAPAR 242

Query: 72  SK--RASSRGSKPGHWPAACTFLSHPPERTAPHLRG--PVASGLPRGLRVSVGSPHVSAA 127
            +  RA +      HW    T    P   TAP  R   P      R LR+ V    V+  
Sbjct: 243 GEPCRALTGHLSQRHWAPQVTEQVQPSLSTAPGDRAVFPQLCSSGRTLRIHVEKEAVTTP 302

Query: 128 SRSSP 132
             SSP
Sbjct: 303 EASSP 307


>gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]
          Length = 1290

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 70  NYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRG 114
           +Y+ R  +RG K        +  SHPP+   PH+  PV   +P G
Sbjct: 924 SYATRRQTRGQKENGLSETTSKDSHPPDLGPPHI--PVPPSIPVG 966


>gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]
          Length = 1291

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 70  NYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRG 114
           +Y+ R  +RG K        +  SHPP+   PH+  PV   +P G
Sbjct: 924 SYATRRQTRGQKENGLSETTSKDSHPPDLGPPHI--PVPPSIPVG 966


>gi|33695078 protein phosphatase 2, regulatory subunit B'', beta
           isoform 1 [Homo sapiens]
          Length = 575

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 79  GSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSV-GSPHVSAASRSS 131
           G +PG WP A      P     P   GP    LP G   S   +PHV    RS+
Sbjct: 52  GEQPGAWPTAPLAAPRPSGLEPPGTPGP-GPALPLGAASSPRNAPHVRGTRRSA 104


>gi|116063562 FERM domain containing 4A [Homo sapiens]
          Length = 1039

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 66   SKLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVGSPHVS 125
            S+L + S  +S  GS+     +  TF++H      P +    ++ LP+  R S  S  + 
Sbjct: 943  SRLSHTSSTSSDSGSQYST-SSQSTFVAHSRVTRMPQMCKATSAALPQSQRSSTPSSEIG 1001

Query: 126  AASRSSP 132
            A   SSP
Sbjct: 1002 ATPPSSP 1008


>gi|239754342 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 235

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 18  ATRGHTGDRD------SRVCA---HADAPICTRTGALRGPGLLTAGRVFNSNILNYKSKL 68
           A RG   +R+      SRVCA    A +P+  R G  R PG    G +  + +       
Sbjct: 8   AQRGGRRERERDSKALSRVCAPARSARSPLGARAGGARVPGARPRGGLPRARVRARPGCR 67

Query: 69  GNY----------SKRASSRGSKPG-HWPAACTFLSHPPERTAPHLRGPVASGLPRGLR 116
             +           +R  SRG+     W +AC       ER     RG    G+P G R
Sbjct: 68  APFLCTAAVRPAARQRLGSRGAAAATSWSSACRGRGRVCEREGEGSRGVGEEGVPAGGR 126


>gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 878

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 2   RLSRSLPS---TTRVATSTATRGHTGDRDSRVCAHADAP----ICTRTGALRGPGLLTAG 54
           RL RS P     T+V    A  GH       +   + AP    + T TG +R    L   
Sbjct: 578 RLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLED 637

Query: 55  RVFNSNILNYKSKLGNYSKRASS------RGSKPGHWPAACTFLSHPPERT 99
                 ++      G+ S  +++          P   P +  FL HPPER+
Sbjct: 638 DSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHPPERS 688


>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 944

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 2   RLSRSLPS---TTRVATSTATRGHTGDRDSRVCAHADAP----ICTRTGALRGPGLLTAG 54
           RL RS P     T+V    A  GH       +   + AP    + T TG +R    L   
Sbjct: 578 RLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLED 637

Query: 55  RVFNSNILNYKSKLGNYSKRASS------RGSKPGHWPAACTFLSHPPERT 99
                 ++      G+ S  +++          P   P +  FL HPPER+
Sbjct: 638 DSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHPPERS 688


>gi|22749325 zinc finger protein 48 [Homo sapiens]
          Length = 618

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 80  SKPGH-WPAACTFLSHPPERTAPHL--RGPVASGLPRGLRVSVGSPHVSAASRSSPPLAG 136
           S PG+  PA       PP  T+P L  R P  SG P GL      P    A    PPLAG
Sbjct: 388 SFPGYPLPALIPSPPPPPLGTSPPLTPRSPSHSGEPFGLPGLEPEPGGPQAGEPPPPLAG 447


>gi|122937420 plasma kallikrein-like protein 4 [Homo sapiens]
          Length = 395

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 9   STTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSNILNYKSKL 68
           S T+  T TA  G  G     +C      +    G L   G    G    + + +Y   +
Sbjct: 207 SHTKEETKTACLGDPGS--PMMCQLQQFDLWVLRGVLNFGGETCPGLFLYTKVEDYSKWI 264

Query: 69  GNYSKRASSRGSKPGHWPAACTFLSHPPERT 99
            + ++RA    S   HW    +F  H P  T
Sbjct: 265 TSKAERAGPPLSSLHHWEKLISFSHHGPNAT 295


>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
          Length = 818

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 79  GSKPGHWPAACTFLSHPPERTAPHLRGPVASGL-PRGLRVSVGSPHVSAASRSSPP 133
           G++PG  P A    S PP   +PH    V+  L P   +V  G P   A   +  P
Sbjct: 619 GAQPGAQPGASPSPSQPPADQSPHTLRKVSKKLAPIPPKVPFGQPGAMADQSAGQP 674


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 97   ERTAPHLRGPVASGLPRGLRVSVGSPHVSAASRSSP 132
            E  + H+ G V +GL +   V  G P VS   R SP
Sbjct: 1543 EGKSQHVNGGVMNGLEQSEEVGQGMPLVSEGDRGSP 1578


>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
          Length = 326

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 18/101 (17%)

Query: 89  CTFLSHPPERTA-----PHLRGPVA-SGLPRGLRVS-----VGSPHVSAAS---RSSPPL 134
           C F+ +P E  A     P LR  ++ SGLP G R S     +  P +S++S    SSPP 
Sbjct: 162 CHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPP 221

Query: 135 AGFCFHLLISQSTASYLAYEGLDLRKPSWITAARKRKNATP 175
            G    L +S S  S      L  R P+ +     R+ ATP
Sbjct: 222 PG---DLPLSPSAFSAAPGTPLARRDPTPVCCPSCRR-ATP 258


>gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens]
          Length = 1123

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 13/168 (7%)

Query: 2   RLSRSLPSTTRVATSTATRGHTGDRDSRVCAHADAPICTRTGALRGPGLLTAGRVFNSNI 61
           R ++ LP T+   +S +     G  DSR    + +P    T    G GL   G   ++ +
Sbjct: 548 RTAQGLPGTSNSNSSRSGSQRQGSWDSRDVVLSTSPKLLATATANGHGL--KGNDESAGL 605

Query: 62  LNYKSKLGNYSKRASSRGSKPGHWP-AACTFLSHPPE---RTAPHLRGPVASGLPRGLRV 117
               S   +    ASS  +K    P +    L    E    TA H + P +    + +++
Sbjct: 606 DRRGSSSSSPEHSASSDSTKAPQTPRSGAAHLCDSQETNCSTAGHSKTPPSGADSKTVKL 665

Query: 118 S---VGSPHVSAASRSSPPLAGFCFHLLISQSTASYL-AYEGLDLRKP 161
               + +     AS  SPP A     L +S   AS L    G DLR P
Sbjct: 666 KSPVLSNTTTEPASTMSPPPAK---KLALSAKKASTLWRATGNDLRPP 710


>gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens]
          Length = 1684

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 72   SKRASSRGSKPGHWPAACTFLSHPP-------ERTAPHLRGPVASGLPRGLRVSVGSPHV 124
            SK   S+G + GHWP A    S          E +  H    + SGLP G   S G P +
Sbjct: 1168 SKPPFSQGQEKGHWPWAKQQSSLEGGDRPLSWEESTEHSSLALNSGLPNGETSSGGQPRL 1227

Query: 125  S 125
            +
Sbjct: 1228 A 1228


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 86  PAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVGSPHVSAASRSSPPLAG 136
           PAA    + PP    P    PVA+  P        +P  +AA+ ++PP  G
Sbjct: 119 PAAAAAAAPPPTPAPPPPPAPVAAAAP------ARAPRAAAAAATAPPSPG 163


>gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 68  LGNYSKRASSRGSK----PGHWPAACTFLSHPP--ERTA------PHLRGPVASGLPRGL 115
           L N+S+ A S   +    P H P +C   S+PP  ++ A      P LRG V    PR  
Sbjct: 87  LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGV-KDTPRRF 145

Query: 116 RVSVGSPHVSAASR 129
            V   SP    A R
Sbjct: 146 AVPPPSPRTPGARR 159


>gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 68  LGNYSKRASSRGSK----PGHWPAACTFLSHPP--ERTA------PHLRGPVASGLPRGL 115
           L N+S+ A S   +    P H P +C   S+PP  ++ A      P LRG V    PR  
Sbjct: 87  LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGV-KDTPRRF 145

Query: 116 RVSVGSPHVSAASR 129
            V   SP    A R
Sbjct: 146 AVPPPSPRTPGARR 159


>gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo
           sapiens]
          Length = 208

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 68  LGNYSKRASSRGSK----PGHWPAACTFLSHPP--ERTA------PHLRGPVASGLPRGL 115
           L N+S+ A S   +    P H P +C   S+PP  ++ A      P LRG V    PR  
Sbjct: 87  LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGV-KDTPRRF 145

Query: 116 RVSVGSPHVSAASR 129
            V   SP    A R
Sbjct: 146 AVPPPSPRTPGARR 159


>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
           [Homo sapiens]
          Length = 441

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 9   STTRVATSTATRGHTGDRDSRVCAHADAPICTRT--GALRGPGLLTAGRVFNSNILNYKS 66
           +TT+V  ST     T D +    A A AP+ T T  GA+  P   TA   FN++    + 
Sbjct: 252 ATTKVPLSTEPPQSTQDPEPLSMAFAGAPLQTSTPIGAMGTPAPKTAFS-FNTSDTQAQP 310

Query: 67  KLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRG--LRVSVGSPHV 124
                    +S  + P   P      S      AP L   VA+         ++ G+PH 
Sbjct: 311 SAAQEQVVPASVPTSPTTSPTVTVLAS------APALAPQVATSYTPSSTTHIAQGAPHP 364

Query: 125 SAASRSSP 132
            +   +SP
Sbjct: 365 PSRMHNSP 372


>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
           [Homo sapiens]
          Length = 591

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 9   STTRVATSTATRGHTGDRDSRVCAHADAPICTRT--GALRGPGLLTAGRVFNSNILNYKS 66
           +TT+V  ST     T D +    A A AP+ T T  GA+  P   TA   FN++    + 
Sbjct: 252 ATTKVPLSTEPPQSTQDPEPLSMAFAGAPLQTSTPIGAMGTPAPKTAFS-FNTSDTQAQP 310

Query: 67  KLGNYSKRASSRGSKPGHWPAACTFLSHPPERTAPHLRGPVASGLPRG--LRVSVGSPHV 124
                    +S  + P   P      S      AP L   VA+         ++ G+PH 
Sbjct: 311 SAAQEQVVPASVPTSPTTSPTVTVLAS------APALAPQVATSYTPSSTTHIAQGAPHP 364

Query: 125 SAASRSSP 132
            +   +SP
Sbjct: 365 PSRMHNSP 372


>gi|39777614 SS18-like protein 1 [Homo sapiens]
          Length = 396

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 10  TTRVATSTATRGHTGDRDSRVCAHADAP--ICTRTGALRGPGLLTAGRVFNSNILNYKSK 67
           +T +  S+  +G  G+  S V     AP  + T + ++ GPG   AG       +  +  
Sbjct: 110 STGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQGT 169

Query: 68  LGNYSKRAS 76
           +GNY  R +
Sbjct: 170 IGNYVSRTN 178


>gi|41281808 harmonin isoform b3 [Homo sapiens]
          Length = 899

 Score = 26.9 bits (58), Expect = 9.4
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 13/58 (22%)

Query: 82  PGHWPAACTFLSHPPERTAPHLRGPVASGLPRGLRVSVGSPHVSAAS-----RSSPPL 134
           P   P+A   + HPP    PH + P    LP        S HVSA+S     R+ PP+
Sbjct: 554 PPKTPSALPVMPHPPPSNPPH-KVPAPPVLPL-------SGHVSASSSPWVQRTPPPI 603


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,535,007
Number of Sequences: 37866
Number of extensions: 357675
Number of successful extensions: 1185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 54
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.