Guide to the Human Genome
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Name: LOC100293606 Sequence: fasta or formatted (208aa) NCBI GI: 239754854
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         13           2
 C cysteine            2.4          5           1
 D aspartate           1.4          3           1
 E glutamate           4.3          9           2
 F phenylalanine       5.8         12           3
 G glycine             6.7         14           2
 H histidine           1.9          4           1
 I isoleucine          4.8         10           2
 K lysine              5.8         12           1
 L leucine             9.1         19           2
 M methionine          0.5          1           1
 N asparagine          3.8          8           1
 P proline            11.1         23           3
 Q glutamine           2.9          6           1
 R arginine            7.7         16           3
 S serine              8.2         17           2
 T threonine           7.7         16           2
 V valine              6.2         13           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287332          1.000   PREDICTED: hypothetical protein 
LOC100287332          1.000   PREDICTED: hypothetical protein XP_002342882 
RIMS1                 0.032   regulating synaptic membrane exocytosis 1 
DCLK1                 0.025   doublecortin-like kinase 1 
LOC154860             0.020   PREDICTED: hypothetical protein LOC154860 
LOC100291624          0.020   PREDICTED: hypothetical protein XP_002345876 
LOC100127891          0.020   PREDICTED: similar to hCG2042508 
LOC100289712          0.020   PREDICTED: hypothetical protein XP_002346761 
LOC100127891          0.020   PREDICTED: similar to hCG2042508 
LOC100287455          0.020   PREDICTED: hypothetical protein XP_002342583 
LOC100127891          0.020   PREDICTED: similar to hCG2042508 
DACT1                 0.020   dapper 1 isoform 2 
DACT1                 0.020   dapper 1 isoform 1 
COL5A3                0.020   collagen, type V, alpha 3 preproprotein 
SRRM2                 0.020   splicing coactivator subunit SRm300 
LOC100287297          0.020   PREDICTED: hypothetical protein XP_002342926 
MUC6                  0.020   mucin 6, gastric 
C10orf47              0.017   hypothetical protein LOC254427 
MAP3K10               0.017   mitogen-activated protein kinase kinase kinase 10 [H...
SNIP                  0.017   SNAP25-interacting protein 
SRRM1                 0.017   serine/arginine repetitive matrix 1 
BTBD7                 0.017   BTB (POZ) domain containing 7 isoform 1 
LOC100292122          0.017   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.017   PREDICTED: hypothetical protein XP_002344191 
TAF4                  0.017   TBP-associated factor 4 
ALPK3                 0.017   alpha-kinase 3 
MUC7                  0.015   mucin 7, secreted precursor 
LOC100128127          0.015   PREDICTED: hypothetical protein 
LOC100128127          0.015   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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