Guide to the Human Genome
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Name: USP54 Sequence: fasta or formatted (1684aa) NCBI GI: 124001558
Description:

ubiquitin specific peptidase 54

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         85           3
 C cysteine            2.4         41           1
 D aspartate           5.1         86           3
 E glutamate           6.5        110           2
 F phenylalanine       3.1         53           3
 G glycine             6.2        104           2
 H histidine           4.0         67           2
 I isoleucine          3.0         51           2
 K lysine              4.6         77           2
 L leucine             8.3        140           4
 M methionine          1.8         31           1
 N asparagine          2.7         45           1
 P proline             7.4        125           2
 Q glutamine           6.2        105           4
 R arginine            6.7        112           2
 S serine             14.6        246           5
 T threonine           5.2         88           2
 V valine              3.6         60           2
 W tryptophan          1.5         25           1
 Y tyrosine            2.0         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific peptidase 54 
USP53                 0.145   ubiquitin specific protease 53 
FLG                   0.010   filaggrin 
RBBP6                 0.008   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.008   retinoblastoma-binding protein 6 isoform 1 
DSPP                  0.006   dentin sialophosphoprotein preproprotein 
C2orf16               0.005   hypothetical protein LOC84226 
CYLC1                 0.005   cylicin, basic protein of sperm head cytoskeleton 1...
FNDC1                 0.005   fibronectin type III domain containing 1 
BAZ2A                 0.005   bromodomain adjacent to zinc finger domain, 2A [Homo...
N4BP3                 0.005   Nedd4 binding protein 3 
GIGYF2                0.004   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.004   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.004   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.004   GRB10 interacting GYF protein 2 isoform b 
QRICH1                0.004   glutamine-rich 1 
QRICH1                0.004   glutamine-rich 1 
NOLC1                 0.004   nucleolar and coiled-body phosphoprotein 1 
SORBS2                0.004   sorbin and SH3 domain containing 2 isoform 6 
FLG2                  0.004   filaggrin family member 2 
AFF1                  0.004   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
ATF7IP                0.004   activating transcription factor 7 interacting protei...
MED15                 0.004   mediator complex subunit 15 isoform b 
C1orf106              0.004   hypothetical protein LOC55765 isoform 2 
C1orf106              0.004   hypothetical protein LOC55765 isoform 1 
BSN                   0.004   bassoon protein 
FAM48A                0.004   family with sequence similarity 48, member A isoform...
CCDC86                0.004   coiled-coil domain containing 86 
SFRS11                0.004   splicing factor, arginine/serine-rich 11 
NIPBL                 0.004   delangin isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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