Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239508892
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508892 PREDICTED: hypothetical protein [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo ... 382 e-107
gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo ... 382 e-107
gi|239508892 PREDICTED: hypothetical protein [Homo sapiens] 382 e-107
gi|239754611 PREDICTED: hypothetical protein [Homo sapiens] 377 e-105
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 43 2e-04
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 42 3e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 41 6e-04
gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo ... 41 6e-04
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 40 8e-04
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 40 0.001
gi|16306552 semaphorin Y [Homo sapiens] 40 0.001
gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo sapi... 40 0.001
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 40 0.001
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 39 0.002
gi|117938759 GNAS complex locus XLas [Homo sapiens] 39 0.002
gi|33286436 gametogenetin [Homo sapiens] 39 0.002
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 39 0.003
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 38 0.004
gi|46409434 hypothetical protein LOC388759 [Homo sapiens] 38 0.004
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 38 0.004
gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo ... 38 0.005
gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens] 37 0.007
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 37 0.007
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 37 0.007
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 37 0.007
gi|47933339 RNA binding motif protein 15 [Homo sapiens] 37 0.009
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 37 0.009
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 37 0.012
>gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo
sapiens]
Length = 178
Score = 382 bits (981), Expect = e-107
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
Query: 61 TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61 TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
>gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo
sapiens]
Length = 178
Score = 382 bits (981), Expect = e-107
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
Query: 61 TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61 TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
>gi|239508892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 382 bits (981), Expect = e-107
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
Query: 61 TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61 TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
>gi|239754611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 377 bits (969), Expect = e-105
Identities = 177/178 (99%), Positives = 177/178 (99%)
Query: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1 MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
Query: 61 TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
TD RTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61 TDRRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 42.7 bits (99), Expect = 2e-04
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 51 PELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAA----CRGHPRPTPA--RPPTGAP 104
P L P + + + ++ A++ P L RP A C G P P A RP G P
Sbjct: 362 PALATESPPGAEAKPTSPTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPQWGKP 421
Query: 105 EAPALSGRAARLHGAQRGAPAG 126
P L G A G + APAG
Sbjct: 422 AQPKLEGPGAPTQGGSKEAPAG 443
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 42.4 bits (98), Expect = 2e-04
Identities = 34/89 (38%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 70 RAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQAR 129
RA + G RP RG R P R G P AP+ R A G G PA Q+
Sbjct: 15 RARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPG-PAAPSPPARGAAAWGRSGGGPAAQS- 72
Query: 130 HGAGNRHPPRQGQEED--GGGCGGRDSGG 156
G G P R G E GGG GG GG
Sbjct: 73 GGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 42.0 bits (97), Expect = 3e-04
Identities = 39/145 (26%), Positives = 48/145 (33%), Gaps = 17/145 (11%)
Query: 20 KVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASP 79
++P FP GAP P + P G R +++ P
Sbjct: 6 ELPAFPRAGAP------------PLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDP 53
Query: 80 G-LHGRPAAC--RGHPRPTPARPPTGAP--EAPALSGRAARLHGAQRGAPAGQARHGAGN 134
+ R C G P P AP APA SGR R +R A AG GA
Sbjct: 54 NKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAG 113
Query: 135 RHPPRQGQEEDGGGCGGRDSGGLSS 159
PP G G D+ G SS
Sbjct: 114 AEPPNAGDPFKAGEAETNDTNGYSS 138
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 40.8 bits (94), Expect = 6e-04
Identities = 50/171 (29%), Positives = 58/171 (33%), Gaps = 21/171 (12%)
Query: 18 GEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAA 77
GE P PG P P P P P P GPGP + R A AA
Sbjct: 11 GESPGATPAPGPPPPPPPAPPQQQPPPP----PPPAPPPGPGPAPPQHPPRAEALPPEAA 66
Query: 78 SPG-----LHGRPAACRGHPRPTPARPPTGAPEAPALSGR----AARLHGAQRGAPAGQA 128
G L R ++C P A G+P G A G RG +
Sbjct: 67 DEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFS 126
Query: 129 RHGAGNRHPPRQGQEEDGG----GCGGRDSGGLSSIFFSQRHIIVLALLQP 175
GA + P G E+ G G G G +S F QR ALLQP
Sbjct: 127 CRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQAS--FMQRQF--GALLQP 173
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 18 GEKVPTFPEPGAPFMPRPQPVVVSTPCSVQ-----CHTPELERGGPGPTDCRTSRRLRAA 72
G++V FP P P P V S ++Q P++ R GP + R
Sbjct: 708 GQRVGLFPPPPPP------PQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPR----- 756
Query: 73 IVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAP 107
+V PG PA P P P P GAP +P
Sbjct: 757 LVRRPPPG----PAPAAASPGPPPPASPPGAPASP 787
>gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo
sapiens]
Length = 324
Score = 40.8 bits (94), Expect = 6e-04
Identities = 42/135 (31%), Positives = 51/135 (37%), Gaps = 22/135 (16%)
Query: 33 PRPQ----PVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAAC 88
P PQ +T + + P P P + R ++L AI G GR A
Sbjct: 88 PHPQITQRGAAAATAAAPEDSAPRRFAPDPRPPEPRPPQQLLPAI------GTRGRAATA 141
Query: 89 RGHPR-------PTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQG 141
R HP PT A P PE P R+ R G RGAP + NR P G
Sbjct: 142 R-HPHWLGPLVSPTTAHHPLRLPEEPPSHWRSLRAGGG-RGAPVQPL---SVNRRSPTPG 196
Query: 142 QEEDGGGCGGRDSGG 156
E G G G + GG
Sbjct: 197 GREAGEGEGRTEGGG 211
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 40.4 bits (93), Expect = 8e-04
Identities = 49/149 (32%), Positives = 56/149 (37%), Gaps = 22/149 (14%)
Query: 18 GEKVPTFPEPGA---PFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIV 74
G + P PGA P RP P+ P ++ L R PG CR R AA
Sbjct: 36 GPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPL-RARPG---CRPRRPHPAARC 91
Query: 75 AAASPGL----HGRPAA---CRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQ 127
P H RP G P+P P RP G A AL+G GA G Q
Sbjct: 92 LPLRPHRPTRRHRRPGGFPLAWGSPQPAP-RPAPGRSSALALAG------GAAPGVARAQ 144
Query: 128 ARHGAGNR-HPPRQGQEEDGGGCGGRDSG 155
G+G R HP G GG G D G
Sbjct: 145 RPGGSGGRSHPGGPGSPRGGGTVGPGDRG 173
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 39.7 bits (91), Expect = 0.001
Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 10/131 (7%)
Query: 30 PFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAACR 89
P P P + TP P L+ P +AA A S RP R
Sbjct: 269 PTSPHQPPRLPVTPVPQSVALPSLQSARPAAAGAAPRLSPQAARCTALSTEKPDRPGPPR 328
Query: 90 GHPRPTPARPPT--GAP-EAPALSGRAARLHGAQRGAPAGQARHGA--GNRHPP----RQ 140
P PTP PT AP +A L R R PA ++R+ A RH P R+
Sbjct: 329 RPPAPTPVSAPTLRSAPLDAHRLRERLPESSVGPRAEPARRSRNAAMVSPRHQPGKARRE 388
Query: 141 G-QEEDGGGCG 150
G EE G CG
Sbjct: 389 GLWEEAVGTCG 399
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 39.7 bits (91), Expect = 0.001
Identities = 49/141 (34%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 25 PEPGAPFMPRPQPVVVSTPCSV--QCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLH 82
P PG P Q V V+T + H P+ R G P TSR A+ +P L
Sbjct: 753 PPPGCP----GQAVEVTTLEELLRYLHGPQPPRKGAEPPAPLTSR----ALPPEPAPALL 804
Query: 83 GRPAACRGHPRPTPAR---PPTG----APEAPALSGRAARLHGAQRGAPAGQARHGAGNR 135
G P+ R H +P R PP G AP PALS A RL G G+ +G+R
Sbjct: 805 GGPSP-RPHECASPLRLDVPPEGRCASAPARPALSAPAPRL-----GVGGGRRLPFSGHR 858
Query: 136 HPPRQGQEEDGGGCGGRDSGG 156
PP GG R SGG
Sbjct: 859 APPALLTRVPSGG-PSRYSGG 878
>gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo
sapiens]
Length = 442
Score = 39.7 bits (91), Expect = 0.001
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 111 GRAARLHGAQRGAPAGQARHGA--GNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHII 168
GRAA L G G PA + R G G R QGQ + GCG R GG F ++
Sbjct: 18 GRAAALRGPGAGGPAARPRLGGDGGGRRHLGQGQPRELAGCGSRADGG-----FRPSRVV 72
Query: 169 VLA 171
V+A
Sbjct: 73 VVA 75
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 39.7 bits (91), Expect = 0.001
Identities = 39/138 (28%), Positives = 45/138 (32%), Gaps = 13/138 (9%)
Query: 22 PTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGL 81
P P+P P P P S P Q GPGP S ++ A+P
Sbjct: 88 PPHPQPHQQQQPPPPPQDSSKPVVAQ---------GPGPAPGVGSAPPASSSAPPATPPT 138
Query: 82 HGRPAACRGHPRPTPARPPTGAPEA---PALSGRAARLHGAQRGAPAGQARHGAGNRHPP 138
G P P PTP T AP P Q G P G P
Sbjct: 139 SGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGP 198
Query: 139 RQGQEEDGGGCGGRDSGG 156
+QG GG GG+ GG
Sbjct: 199 KQG-PGPGGPKGGKMPGG 215
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 66 SRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPA 125
SRR R ++ +P AAC P AP APA SGR R +R A A
Sbjct: 461 SRRRRCVLLGPVAP------AAC------APCASAPCAP-APAASGRPPRAEELERRALA 507
Query: 126 GQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSS 159
G GA PP G G D+ G SS
Sbjct: 508 GAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSS 541
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/73 (39%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 75 AAASPGLHGRPAACRGHP-RPTPARPPTGAPEAPALSG-RAARLHGAQRGAPAGQARHGA 132
A A+P PAA PA P GAP APA S RAA++ A APA AR
Sbjct: 467 AGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASAAPASGARRKI 526
Query: 133 GNRHPPRQGQEED 145
R P + Q D
Sbjct: 527 HLRPPSPEIQAAD 539
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 38.9 bits (89), Expect = 0.002
Identities = 44/153 (28%), Positives = 55/153 (35%), Gaps = 24/153 (15%)
Query: 22 PTF----PEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRL-------R 70
PTF P G P P P + P P L+ PT + L
Sbjct: 414 PTFIFPAPTNGEPMRPGPPGLQELPPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKE 473
Query: 71 AAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSG----------RAARLHG-- 118
+A+ A+P L AA + P P+PA PT A +P +S R R G
Sbjct: 474 SALAPTAAPALPPALAADQA-PAPSPAPAPTVAEPSPPVSAPAPAAAPIKTRTRRNKGSR 532
Query: 119 AQRGAPAGQARHGAGNRHPPRQGQEEDGGGCGG 151
A RGA HG G R + GG GG
Sbjct: 533 AARGATRKDGLHGDGPRERATATVPDSSGGGGG 565
Score = 26.9 bits (58), Expect = 9.2
Identities = 38/133 (28%), Positives = 48/133 (36%), Gaps = 34/133 (25%)
Query: 13 NHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAA 72
+H G G+ P+ P PR V + P + P LE P P S R
Sbjct: 129 SHRGQGDP-PSLRPLKPPPPPRQLSVKDTVPRAPSQFPPPLETWKPPPP--LPSER---- 181
Query: 73 IVAAASPGLHGRPAACRGHPR-PTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHG 131
+PA R P TPA PPT + P +G AG+AR G
Sbjct: 182 -----------QPADRRITPALATPASPPTESQAGP-----------RNQGQTAGRARGG 219
Query: 132 AGNRHPPRQGQEE 144
A PP G+ E
Sbjct: 220 A----PPHAGEGE 228
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 38.5 bits (88), Expect = 0.003
Identities = 40/146 (27%), Positives = 53/146 (36%), Gaps = 10/146 (6%)
Query: 17 SGEKVPTFPEPGAPFMPRPQ-PVVVSTPCSVQCHTPELER-GGPGPTDCRTSRRLRAAIV 74
SG P+ P R Q P STP ++P + + GG GP + ++ +
Sbjct: 2266 SGSPAPSTSGTSTPRRGRRQLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQQQQQQQQQQQ 2325
Query: 75 AAASPGLHGRPAACRGHPRPTPA-----RPPTGAPEAPALSGRAARLHGAQRGAPAGQAR 129
A A PG + R +P PT RPPTG + R+ G R R
Sbjct: 2326 AVARPG-RAATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSPRMERRVPGPARSESPRACR 2384
Query: 130 HGAGNRHPPRQGQEEDGGGCGGRDSG 155
HG P G G G R G
Sbjct: 2385 HGGARW--PASGPHVSEGPPGPRHHG 2408
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 38.1 bits (87), Expect = 0.004
Identities = 40/133 (30%), Positives = 47/133 (35%), Gaps = 35/133 (26%)
Query: 22 PTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGL 81
P P P P P+ V + +R PGP++ RR+ A
Sbjct: 122 PALPTWSVPNGPSPEEV------------EQQKRQQPGPSE-HIERRVSNA--------- 159
Query: 82 HGRPAACRGHPRPTPA-RPPTGAPEAPAL--SGRAARLHGAQRGAPAGQARHGAGNRHPP 138
G PA G P P P PP G P P L SG A HGA G P PP
Sbjct: 160 GGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPA----------PP 209
Query: 139 RQGQEEDGGGCGG 151
+ GGG G
Sbjct: 210 LPAAQGPGGGGAG 222
Score = 30.4 bits (67), Expect = 0.84
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 79 PGL--HGRPAACRGHPRPTPARPPTGAPEAP-----ALSGRAARLHGAQRGAPAGQARHG 131
PGL G PAA G P PP A + P G AA + GA+ + Q
Sbjct: 186 PGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGAKLRKVSKQEEAS 245
Query: 132 AGNRHPPRQGQEEDGGG 148
G P + GGG
Sbjct: 246 GGPTAPKAESGRSGGGG 262
>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
Length = 237
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/97 (34%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Query: 55 RGGPGPTDCRTS-RRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRA 113
R G C +S R LR A P PA PRP+P AP AP + A
Sbjct: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGA 165
Query: 114 ARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGGCG 150
L G GQA GA P G E GCG
Sbjct: 166 YELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCG 202
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 38.1 bits (87), Expect = 0.004
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 25 PEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGR 84
P+ +P P P P +P S C +P +R P P C++ R + V
Sbjct: 368 PQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPV---------- 417
Query: 85 PAACRGHPRPTPARPPTGAPEAPALSGRA 113
P +C P P P PP P L+ RA
Sbjct: 418 PPSC---PAPQPRPPPPPPPGERTLAERA 443
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 29 APFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGR---P 85
AP P P P + P C +P +R P P +R A + SP R P
Sbjct: 344 APQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVP 403
Query: 86 AACRGHPRPTPARPPTGAPEAPA 108
+C+ P+P R P PA
Sbjct: 404 PSCQS---PSPQRRSPVPPSCPA 423
>gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo
sapiens]
Length = 344
Score = 37.7 bits (86), Expect = 0.005
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 64 RTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGA--PEAPALSGRAARLHGAQR 121
R+SRR R A +A AS G PAA P P+ A P A P P +
Sbjct: 5 RSSRRTRTAGLARAS-GAPSGPAAAAAAPAPSLAAPSARALAPSPPPDLLEVDVAQAGRV 63
Query: 122 GAPAGQARHGAGNRHPPRQGQEEDGGGC 149
G G+A+HG R P + E C
Sbjct: 64 GRQRGRAQHGVHGRRAPLTARREAARAC 91
>gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens]
Length = 219
Score = 37.4 bits (85), Expect = 0.007
Identities = 38/126 (30%), Positives = 45/126 (35%), Gaps = 3/126 (2%)
Query: 33 PRPQPVVVSTPCSVQCHTPELERGGPGPT-DCRTSRRLRAAIVAAASPGLHGRPAACRGH 91
P P P V P S Q + L PGP D R + GLH RP+ C
Sbjct: 60 PGPAPPVSQWPLSAQPSSC-LPAAFPGPAFDFRRPLQTPTRPGLLPPEGLH-RPSLCLTA 117
Query: 92 PRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGGCGG 151
P PAR A SG +A G+ HGA + P Q Q GG G
Sbjct: 118 DSPRPARSRLTAASRVQSSGLSAASAGSTAACQWPLQPHGAHSSQRPFQAQFFPSGGLSG 177
Query: 152 RDSGGL 157
S +
Sbjct: 178 PRSSSM 183
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 37.4 bits (85), Expect = 0.007
Identities = 37/127 (29%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 15 LGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERG--GPGPTDCRTSRRLRAA 72
LGSG P P PG+ P P P + P + G G GP
Sbjct: 228 LGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPP----------- 276
Query: 73 IVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHGA 132
+A +PG G P HP P PP G P P +S HG G+
Sbjct: 277 --SAGTPGA-GHPGHGHSHPHPF---PPGGMPH-PGMSQMQLAHHGPHGLGHPHAGPPGS 329
Query: 133 GNRHPPR 139
G + PPR
Sbjct: 330 GGQPPPR 336
Score = 26.9 bits (58), Expect = 9.2
Identities = 32/110 (29%), Positives = 35/110 (31%), Gaps = 41/110 (37%)
Query: 16 GSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVA 75
GSG + P P PG MP P P + P RG P
Sbjct: 328 GSGGQPPPRPPPG---MPHPGPPPMGMP----------PRGPP----------------- 357
Query: 76 AASPGLHGRPAACRGHPRPTPARPP---TGAPEAPALSGRAARLHGAQRG 122
SP H P G P P PP TG P P +G QRG
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPP--------YGYQRG 399
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 37.4 bits (85), Expect = 0.007
Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 36/138 (26%)
Query: 20 KVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASP 79
+VPT P P P PV ++TP S + P P +D S A+ V
Sbjct: 579 EVPTVPAEA----PAPSPVPLTTPASAEEAIPL-----PASSDSERS----ASSVEGPGG 625
Query: 80 GLHGR-------PAACRGH-------PRPTPARPPTGAPEAPALSGRAARLHGAQRGAPA 125
L+ R PA RG P P +PP P PA + + +HG A A
Sbjct: 626 ALYARVARREARPARARGEIGGLSLSPSPERRKPP---PPDPATKPKVSWIHGKHSAAAA 682
Query: 126 GQARHGAGNRHPPRQGQE 143
G+A PP G E
Sbjct: 683 GRA------PSPPPPGSE 694
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 37.4 bits (85), Expect = 0.007
Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 36/138 (26%)
Query: 20 KVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASP 79
+VPT P P P PV ++TP S + P P +D S A+ V
Sbjct: 574 EVPTVPAEA----PAPSPVPLTTPASAEEAIPL-----PASSDSERS----ASSVEGPGG 620
Query: 80 GLHGR-------PAACRGH-------PRPTPARPPTGAPEAPALSGRAARLHGAQRGAPA 125
L+ R PA RG P P +PP P PA + + +HG A A
Sbjct: 621 ALYARVARREARPARARGEIGGLSLSPSPERRKPP---PPDPATKPKVSWIHGKHSAAAA 677
Query: 126 GQARHGAGNRHPPRQGQE 143
G+A PP G E
Sbjct: 678 GRA------PSPPPPGSE 689
>gi|47933339 RNA binding motif protein 15 [Homo sapiens]
Length = 977
Score = 37.0 bits (84), Expect = 0.009
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 53 LERGGPGPTDCRTSRRLRAAIVAAASPG-----LHG----RPAACRGHPR-PTPARPPTG 102
+ G P R+ R RA + S G L G RPA +G R P A+ G
Sbjct: 1 MRTAGRDPVPRRSPRWRRAVPLCETSAGRRVTQLRGDDLRRPATMKGKERSPVKAKRSRG 60
Query: 103 APEAPALSGRAARLHGA--QRGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSS 159
++ + R+ +L G+ G+ +G+ G G+R + GG D+GG SS
Sbjct: 61 GEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSS 119
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 37.0 bits (84), Expect = 0.009
Identities = 37/132 (28%), Positives = 43/132 (32%), Gaps = 24/132 (18%)
Query: 25 PEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGR 84
P P P P P PV + P P P A PG +
Sbjct: 129 PTPAPP--PPPAPVAAAAPARAPRAAAAAATAPPSP--------------GPAQPGPRAQ 172
Query: 85 PAACRGHPRPTPARPPTGAPEA-------PALSGRAARL-HGAQRGAPAGQARHGAGNRH 136
AA P P PA PP AP A PA++ R L Q AP Q +
Sbjct: 173 RAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQ 232
Query: 137 PPRQGQEEDGGG 148
PP +G GG
Sbjct: 233 PPPEGGAVRAGG 244
Score = 36.2 bits (82), Expect = 0.015
Identities = 27/70 (38%), Positives = 27/70 (38%), Gaps = 14/70 (20%)
Query: 55 RGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAA 114
RG P R R AA AAA P PTPA PP AP A A RA
Sbjct: 104 RGATPPAPPRAPRGAPAAAAAAAPP--------------PTPAPPPPPAPVAAAAPARAP 149
Query: 115 RLHGAQRGAP 124
R A AP
Sbjct: 150 RAAAAAATAP 159
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 36.6 bits (83), Expect = 0.012
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 48 CHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAP 107
C + RGG G + RR +AA+ A S G G+ RG T G
Sbjct: 138 CRSRPQTRGGGG----KQPRRQKAAVAGAKSRGGEGKKPQRRGQKAATAGAKSRGG-GVR 192
Query: 108 ALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGG 148
+L G+ ++ Q+GA AG R G G + P R+GQ+ G
Sbjct: 193 SLGGK--KMRRGQKGA-AGAKRCG-GGKQPRRRGQKASKSG 229
Score = 26.9 bits (58), Expect = 9.2
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 107 PALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSI 160
P G + Q+ A AG G + P R+GQ+ G R GG+ S+
Sbjct: 142 PQTRGGGGKQPRRQKAAVAGAKSRGGEGKKPQRRGQKAATAGAKSR-GGGVRSL 194
>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
Length = 441
Score = 36.6 bits (83), Expect = 0.012
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 25 PEPGAPFMPRPQPVVVST-PCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHG 83
P P PF P + S+ P Q GPG AA +++SP
Sbjct: 56 PPPPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRA---------AAAASSSSPSC-- 104
Query: 84 RPAACRGHPRPTPARPPTGAPEAPALSGRAARL-HGAQRGAPAGQARHGA 132
PA +GH R TPA+PP +P A + S AA + +G A AG G+
Sbjct: 105 TPATSQGHLR-TPAQPPPASPAASSSSSFAAVVRYGPGAAAAAGTGGTGS 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,056,010
Number of Sequences: 37866
Number of extensions: 808782
Number of successful extensions: 7225
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 892
Number of HSP's that attempted gapping in prelim test: 5491
Number of HSP's gapped (non-prelim): 2400
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.