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Search of human proteins with 23943886
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23943886 Rhox homeobox family, member 1 [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23943886 Rhox homeobox family, member 1 [Homo sapiens] 384 e-107
gi|239757894 PREDICTED: similar to Rhox homeobox family, member ... 192 1e-49
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 109 1e-24
gi|153791494 Rhox homeobox family, member 2B [Homo sapiens] 81 6e-16
gi|14249119 Rhox homeobox family, member 2 [Homo sapiens] 80 1e-15
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 77 1e-14
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 74 5e-14
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens] 73 1e-13
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 72 4e-13
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 72 4e-13
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 72 4e-13
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 72 4e-13
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 72 4e-13
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 72 4e-13
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 72 4e-13
gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens] 71 5e-13
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 71 5e-13
gi|4557489 cone-rod homeobox protein [Homo sapiens] 71 6e-13
gi|27777663 goosecoid [Homo sapiens] 71 6e-13
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 70 8e-13
gi|14149760 orthopedia homeobox [Homo sapiens] 70 8e-13
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 70 1e-12
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 70 1e-12
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 70 1e-12
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 70 1e-12
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 70 1e-12
gi|46249382 paired-like homeobox 2a [Homo sapiens] 69 2e-12
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 69 2e-12
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 69 2e-12
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 69 3e-12
>gi|23943886 Rhox homeobox family, member 1 [Homo sapiens]
Length = 184
Score = 384 bits (986), Expect = e-107
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGM 60
MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGM
Sbjct: 1 MARSLVHDTVFYCLSVYQVKISPTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGM 60
Query: 61 NRDGGMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELES 120
NRDGGMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELES
Sbjct: 61 NRDGGMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELES 120
Query: 121 VFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANELRADPDDCVY 180
VFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANELRADPDDCVY
Sbjct: 121 VFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANELRADPDDCVY 180
Query: 181 IVVD 184
IVVD
Sbjct: 181 IVVD 184
>gi|239757894 PREDICTED: similar to Rhox homeobox family, member 1
[Homo sapiens]
Length = 177
Score = 192 bits (488), Expect = 1e-49
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 93 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 152
MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK
Sbjct: 1 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 60
Query: 153 NKRARCRRHQRELMLANELRADPDDCVYIVVD 184
NKRARCRRHQRELMLANELRADPDDCVYIVVD
Sbjct: 61 NKRARCRRHQRELMLANELRADPDDCVYIVVD 92
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 109 bits (273), Expect = 1e-24
Identities = 66/160 (41%), Positives = 84/160 (52%), Gaps = 35/160 (21%)
Query: 50 PEGGVNHENGMNRDGGMIPEG----GGGNQEPRQQPQPPP-------------------- 85
PE G EN + +G + + GGG EP QQ + PP
Sbjct: 51 PEYGTEAENNVGTEGSVPSDDQDREGGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQ 110
Query: 86 EEPAQAAMEGPQP-------ENMQP----RTRRTKFTLLQVEELESVFRHTQYPDVPTRR 134
EEP Q +EGPQP E QP R RRT FT Q++ELE+ F +QYPDV R
Sbjct: 111 EEPPQTTVEGPQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARE 170
Query: 135 ELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANELRAD 174
LA L +TED+V+VWF+N+RA+ +R+QR LML N AD
Sbjct: 171 RLAARLNLTEDRVQVWFQNRRAKWKRNQRVLMLRNTATAD 210
>gi|153791494 Rhox homeobox family, member 2B [Homo sapiens]
Length = 288
Score = 80.9 bits (198), Expect = 6e-16
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 38 GQGAPGLMGNMNPEGGVNHENGMNRDGGMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQ 97
G G PG + N EG + G + + +EP QQ P Q A+ G +
Sbjct: 82 GAGVPGHLWEGNLEGTSGSD-------GNVEDSDQSEKEPGQQYSRP-----QGAVGGLE 129
Query: 98 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 157
P N Q FT LQ++ELE +F+ Q+P RR LA ++ VTE V++WF+N+RA+
Sbjct: 130 PGNAQQPNVHA-FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAK 188
Query: 158 CRRHQRELMLANEL 171
RRHQR LM N L
Sbjct: 189 WRRHQRALMARNML 202
>gi|14249119 Rhox homeobox family, member 2 [Homo sapiens]
Length = 288
Score = 80.1 bits (196), Expect = 1e-15
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 22/163 (13%)
Query: 23 PTPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGMNRDGGMIP-----------EGG 71
P P+ G A+ + + G G +GG ++G G +P G
Sbjct: 48 PEPEQGTAAGEK----LKSAGAQGGEEKDGGGEEKDG---GGAGVPGHLWEGDLEGTSGS 100
Query: 72 GGNQEPRQQPQPPPEEP---AQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYP 128
GN E Q + P + Q A+ G +P N Q FT LQ++ELE +F+ Q+P
Sbjct: 101 DGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHA-FTPLQLQELERIFQREQFP 159
Query: 129 DVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANEL 171
RR LA ++ VTE V++WF+N+RA+ RRHQR LM N L
Sbjct: 160 SEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARNML 202
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 76.6 bits (187), Expect = 1e-14
Identities = 56/155 (36%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 24 TPQLGAASSAEGHVGQGAPGLMGNMNPEGGVNHENGMNRDGGMIP--EGGGGNQEPRQQP 81
+P + AA G G G G G GG G GG P E G E ++P
Sbjct: 53 SPAVRAAGGGGGGGGGGGGGGGGGGVGGGGA----GGGAGGGRSPVRELDMGAAERSREP 108
Query: 82 QPP------PE-----EPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDV 130
P PE E A+ ME ++ R RT FTL Q+ ELE +F T YPD
Sbjct: 109 GSPRLTEVSPELKDRKEDAKG-MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDA 167
Query: 131 PTRRELAENLGVTEDKVRVWFKNKRARCRRHQREL 165
R EL++ LG++E +V+VWF+N+RA+CR+ + +L
Sbjct: 168 FMREELSQRLGLSEARVQVWFQNRRAKCRKQENQL 202
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 74.3 bits (181), Expect = 5e-14
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 67 IPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQPEN----MQPRTRRTKFTLLQVEELESVF 122
+PE G QE E A A++ G PE+ + R +RT FT Q++ELE+ F
Sbjct: 28 LPEHGCKGQEHSDS------EKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATF 81
Query: 123 RHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163
+ +YPD+ TR E+A +TE +VRVWFKN+RA+ R+ +R
Sbjct: 82 QRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 122
>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
Length = 190
Score = 73.2 bits (178), Expect = 1e-13
Identities = 33/73 (45%), Positives = 49/73 (67%)
Query: 93 MEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFK 152
ME ++ R RT FTL Q+ ELE +F T YPD R EL++ LG++E +V+VWF+
Sbjct: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
Query: 153 NKRARCRRHQREL 165
N+RA+CR+ + +L
Sbjct: 61 NRRAKCRKQENQL 73
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 71.6 bits (174), Expect = 4e-13
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83 PPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGV 142
P +E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +
Sbjct: 198 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 257
Query: 143 TEDKVRVWFKNKRARCRRH--QRELMLANEL 171
TE +V+VWF N+RAR R+ +LM N L
Sbjct: 258 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 288
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 71.6 bits (174), Expect = 4e-13
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83 PPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGV 142
P +E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +
Sbjct: 199 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 143 TEDKVRVWFKNKRARCRRH--QRELMLANEL 171
TE +V+VWF N+RAR R+ +LM N L
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 71.6 bits (174), Expect = 4e-13
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83 PPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGV 142
P +E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +
Sbjct: 199 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 143 TEDKVRVWFKNKRARCRRH--QRELMLANEL 171
TE +V+VWF N+RAR R+ +LM N L
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 71.6 bits (174), Expect = 4e-13
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83 PPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGV 142
P +E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +
Sbjct: 199 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 143 TEDKVRVWFKNKRARCRRH--QRELMLANEL 171
TE +V+VWF N+RAR R+ +LM N L
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 71.6 bits (174), Expect = 4e-13
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83 PPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGV 142
P +E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +
Sbjct: 199 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 143 TEDKVRVWFKNKRARCRRH--QRELMLANEL 171
TE +V+VWF N+RAR R+ +LM N L
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 71.6 bits (174), Expect = 4e-13
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83 PPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGV 142
P +E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +
Sbjct: 199 PQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKL 258
Query: 143 TEDKVRVWFKNKRARCRRH--QRELMLANEL 171
TE +V+VWF N+RAR R+ +LM N L
Sbjct: 259 TEARVQVWFSNRRARWRKQAGANQLMAFNHL 289
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 71.6 bits (174), Expect = 4e-13
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 77 PRQQPQPPPEEPAQ------AAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDV 130
PRQ P ++ +Q E P + Q R +RT FT Q++ELE+ F+ +YPD+
Sbjct: 54 PRQHPGANEKDKSQQGKNEDVGAEDPSKKKRQ-RRQRTHFTSQQLQELEATFQRNRYPDM 112
Query: 131 PTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163
TR E+A +TE +VRVWFKN+RA+ R+ +R
Sbjct: 113 STREEIAVWTNLTEARVRVWFKNRRAKWRKRER 145
>gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
Length = 225
Score = 71.2 bits (173), Expect = 5e-13
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 101 MQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRR 160
++ R RT FTL Q+ ELE +F T YPD R EL++ LG++E +V+VWF+N+RA+CR+
Sbjct: 115 LKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 174
Query: 161 HQREL 165
+ ++
Sbjct: 175 QENQM 179
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 71.2 bits (173), Expect = 5e-13
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 101 MQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRR 160
++ R RT FTL Q+ ELE +F T YPD R EL++ LG++E +V+VWF+N+RA+CR+
Sbjct: 115 LKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRK 174
Query: 161 HQREL 165
+ ++
Sbjct: 175 QENQM 179
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 70.9 bits (172), Expect = 6e-13
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 104 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163
R RT FT Q+EELE++F TQYPDV R E+A + + E +V+VWFKN+RA+CR+ ++
Sbjct: 40 RRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQ 99
Query: 164 E 164
+
Sbjct: 100 Q 100
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 70.9 bits (172), Expect = 6e-13
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 23/114 (20%)
Query: 73 GNQEPRQQPQPPPEEPAQAAMEGPQPENMQP-----------------------RTRRTK 109
G Q+ P PP E + + P P M P R RT
Sbjct: 107 GAQQCSCVPTPPGYEGPGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTI 166
Query: 110 FTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163
FT Q+E LE++F+ T+YPDV TR +LA + + E+KV VWFKN+RA+ RR +R
Sbjct: 167 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKR 220
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 70.5 bits (171), Expect = 8e-13
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 82 QPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLG 141
QP P+ + G Q + + RT+FT Q+ ELE F T YPD+ R ELA +G
Sbjct: 83 QPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIG 142
Query: 142 VTEDKVRVWFKNKRARCRRHQR 163
+TE +V+VWF+N+RA+ ++ ++
Sbjct: 143 LTESRVQVWFQNRRAKWKKRKK 164
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 70.5 bits (171), Expect = 8e-13
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 82 QPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLG 141
QP P+ + G Q + + RT+FT Q+ ELE F T YPD+ R ELA +G
Sbjct: 83 QPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIG 142
Query: 142 VTEDKVRVWFKNKRARCRRHQR 163
+TE +V+VWF+N+RA+ ++ ++
Sbjct: 143 LTESRVQVWFQNRRAKWKKRKK 164
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 70.1 bits (170), Expect = 1e-12
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 59 GMNRDGGMIPEGG-GGNQEPRQQPQPPPEEPAQAAMEGPQPENMQPRTRRTKFTLLQVEE 117
GM+ + E G G Q+ P P E A + + + R RT FT Q+EE
Sbjct: 174 GMDSSYLSVKEAGVKGPQDRASSDLPSPLEKADS-----ESNKGKKRRNRTTFTSYQLEE 228
Query: 118 LESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163
LE VF+ T YPDV R +LA +TE +V+VWF+N+RA+ R+ +R
Sbjct: 229 LEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 70.1 bits (170), Expect = 1e-12
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 104 RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQR 163
R RT FTL Q+E LE+VF T YPDV TR ELA + +TE +V+VWF+N+RA+ R+ +R
Sbjct: 39 RRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER 98
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 69.7 bits (169), Expect = 1e-12
Identities = 36/83 (43%), Positives = 47/83 (56%)
Query: 86 EEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTED 145
+E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE
Sbjct: 200 DEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEA 259
Query: 146 KVRVWFKNKRARCRRHQRELMLA 168
+V+VWF N+RAR R+ LA
Sbjct: 260 RVQVWFSNRRARWRKQAGANQLA 282
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 69.7 bits (169), Expect = 1e-12
Identities = 36/83 (43%), Positives = 47/83 (56%)
Query: 86 EEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTED 145
+E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE
Sbjct: 198 DEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEA 257
Query: 146 KVRVWFKNKRARCRRHQRELMLA 168
+V+VWF N+RAR R+ LA
Sbjct: 258 RVQVWFSNRRARWRKQAGANQLA 280
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 69.7 bits (169), Expect = 1e-12
Identities = 36/83 (43%), Positives = 47/83 (56%)
Query: 86 EEPAQAAMEGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTED 145
+E + E P + R RT FT Q+EELE F T YPD+ TR ELA+ +TE
Sbjct: 200 DEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEA 259
Query: 146 KVRVWFKNKRARCRRHQRELMLA 168
+V+VWF N+RAR R+ LA
Sbjct: 260 RVQVWFSNRRARWRKQAGANQLA 282
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 68.9 bits (167), Expect = 2e-12
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 96 PQP----ENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWF 151
P+P E + R RT FT Q++ELE VF T YPD+ TR ELA + +TE +V+VWF
Sbjct: 79 PEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWF 138
Query: 152 KNKRARCRRHQR 163
+N+RA+ R+ +R
Sbjct: 139 QNRRAKFRKQER 150
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 68.9 bits (167), Expect = 2e-12
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 31 SSAEGHVGQGAPGLMGNMNPEGG-----------VNHENGMNRDGGMIPEGGGGNQEPRQ 79
+S+ GHV + P L G ++ G V+H + G M+ ++ +
Sbjct: 2 TSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMV--AAQADENVGE 59
Query: 80 QPQPPPEEPA-QAAMEGPQPENMQ----------PRTRRTKFTLLQVEELESVFRHTQYP 128
+ E P + + PQ +N Q R RT F Q++ LE VF T YP
Sbjct: 60 AGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYP 119
Query: 129 DVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANE 170
D R +LA + +TE +V+VWF+N+RA+ RR++R MLAN+
Sbjct: 120 DAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER-AMLANK 160
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 68.9 bits (167), Expect = 2e-12
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 31 SSAEGHVGQGAPGLMGNMNPEGG-----------VNHENGMNRDGGMIPEGGGGNQEPRQ 79
+S+ GHV + P L G ++ G V+H + G M+ ++ +
Sbjct: 2 TSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMV--AAQADENVGE 59
Query: 80 QPQPPPEEPA-QAAMEGPQPENMQ----------PRTRRTKFTLLQVEELESVFRHTQYP 128
+ E P + + PQ +N Q R RT F Q++ LE VF T YP
Sbjct: 60 AGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYP 119
Query: 129 DVPTRRELAENLGVTEDKVRVWFKNKRARCRRHQRELMLANE 170
D R +LA + +TE +V+VWF+N+RA+ RR++R MLAN+
Sbjct: 120 DAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER-AMLANK 160
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 68.6 bits (166), Expect = 3e-12
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 94 EGPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKN 153
E P + Q R +RT FT Q++ELE+ F+ +YPD+ TR E+A +TE +VRVWFKN
Sbjct: 84 EDPSKKKRQ-RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 142
Query: 154 KRARCRRHQR 163
+RA+ R+ +R
Sbjct: 143 RRAKWRKRER 152
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,018,238
Number of Sequences: 37866
Number of extensions: 527162
Number of successful extensions: 5854
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 3914
Number of HSP's gapped (non-prelim): 2077
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.