Guide to the Human Genome
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Name: TIAM1 Sequence: fasta or formatted (1591aa) NCBI GI: 115583670
Description:

T-cell lymphoma invasion and metastasis 1

Referenced in:

Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4        117           3
 C cysteine            1.4         23           2
 D aspartate           5.8         93           3
 E glutamate           8.4        134           2
 F phenylalanine       3.7         59           2
 G glycine             5.7         90           3
 H histidine           3.0         48           3
 I isoleucine          3.4         54           1
 K lysine              6.8        108           4
 L leucine             9.6        152           3
 M methionine          1.7         27           1
 N asparagine          3.1         50           2
 P proline             4.4         70           2
 Q glutamine           4.3         68           2
 R arginine            6.1         97           5
 S serine             10.9        173           3
 T threonine           5.8         93           2
 V valine              5.4         86           2
 W tryptophan          0.9         15           1
 Y tyrosine            2.1         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell lymphoma invasion and metastasis 1 
TIAM2                 0.305   T-cell lymphoma invasion and metastasis 2 isoform a ...
TIAM2                 0.150   T-cell lymphoma invasion and metastasis 2 isoform b ...
PREX1                 0.029   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
ARHGEF9               0.029   Cdc42 guanine exchange factor 9 
PLEKHG1               0.027   pleckstrin homology domain containing, family G (wit...
PREX2                 0.027   DEP domain containing 2 isoform b 
PREX2                 0.027   DEP domain containing 2 isoform a 
SPATA13               0.024   spermatogenesis associated 13 
ARHGEF4               0.022   Rho guanine nucleotide exchange factor 4 isoform a [...
ARHGEF4               0.022   Rho guanine nucleotide exchange factor 4 isoform b [...
TRIO                  0.020   triple functional domain (PTPRF interacting) 
PLEKHG2               0.020   common-site lymphoma/leukemia guanine nucleotide ex...
ITSN2                 0.019   intersectin 2 isoform 3 
ITSN2                 0.019   intersectin 2 isoform 1 
ITSN1                 0.019   intersectin 1 isoform ITSN-l 
MCF2L                 0.018   MCF.2 cell line derived transforming sequence-like ...
MCF2L                 0.018   MCF.2 cell line derived transforming sequence-like ...
VAV1                  0.018   vav 1 guanine nucleotide exchange factor 
DNMBP                 0.018   dynamin binding protein 
VAV3                  0.017   vav 3 guanine nucleotide exchange factor isoform 1 ...
ARHGEF7               0.017   PAK-interacting exchange factor beta isoform a [Hom...
ARHGEF7               0.017   PAK-interacting exchange factor beta isoform d [Hom...
ARHGEF7               0.017   PAK-interacting exchange factor beta isoform c [Hom...
ARHGEF7               0.017   PAK-interacting exchange factor beta isoform b [Homo...
ARHGEF7               0.017   PAK-interacting exchange factor beta isoform a 
KALRN                 0.017   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.017   kalirin, RhoGEF kinase isoform 2 
ARHGEF6               0.017   Rac/Cdc42 guanine nucleotide exchange factor 6 [Homo...
MCF2                  0.016   MCF.2 cell line derived transforming sequence isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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