Guide to the Human Genome
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Name: SPATA13 Sequence: fasta or formatted (652aa) NCBI GI: 23308553
Description:

spermatogenesis associated 13

Referenced in:

Rho and Rac
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         41           2
 C cysteine            2.6         17           1
 D aspartate           6.0         39           2
 E glutamate           8.0         52           2
 F phenylalanine       3.8         25           2
 G glycine             5.8         38           2
 H histidine           2.8         18           1
 I isoleucine          4.8         31           1
 K lysine              6.7         44           2
 L leucine             8.6         56           2
 M methionine          2.6         17           1
 N asparagine          4.1         27           2
 P proline             4.4         29           2
 Q glutamine           6.6         43           3
 R arginine            7.1         46           4
 S serine              6.7         44           3
 T threonine           4.0         26           2
 V valine              4.8         31           2
 W tryptophan          1.4          9           3
 Y tyrosine            2.9         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis associated 13 
ARHGEF4               0.510   Rho guanine nucleotide exchange factor 4 isoform a [...
ARHGEF4               0.482   Rho guanine nucleotide exchange factor 4 isoform b [...
ARHGEF9               0.470   Cdc42 guanine exchange factor 9 
PREX2                 0.140   DEP domain containing 2 isoform b 
PREX2                 0.140   DEP domain containing 2 isoform a 
PREX1                 0.135   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
PLEKHG1               0.079   pleckstrin homology domain containing, family G (wit...
ARHGEF7               0.076   PAK-interacting exchange factor beta isoform d [Hom...
ARHGEF7               0.076   PAK-interacting exchange factor beta isoform c [Hom...
ARHGEF7               0.076   PAK-interacting exchange factor beta isoform b [Homo...
ARHGEF7               0.074   PAK-interacting exchange factor beta isoform a [Hom...
ARHGEF7               0.074   PAK-interacting exchange factor beta isoform a 
PLEKHG2               0.074   common-site lymphoma/leukemia guanine nucleotide ex...
MCF2L                 0.068   MCF.2 cell line derived transforming sequence-like ...
MCF2L                 0.068   MCF.2 cell line derived transforming sequence-like ...
ARHGEF6               0.066   Rac/Cdc42 guanine nucleotide exchange factor 6 [Homo...
ITSN2                 0.064   intersectin 2 isoform 3 
ITSN2                 0.064   intersectin 2 isoform 1 
FARP2                 0.061   FERM, RhoGEF and pleckstrin domain protein 2 
VAV2                  0.060   vav 2 guanine nucleotide exchange factor isoform 1 ...
VAV2                  0.059   vav 2 guanine nucleotide exchange factor isoform 2 [...
ITSN1                 0.059   intersectin 1 isoform ITSN-l 
TIAM1                 0.057   T-cell lymphoma invasion and metastasis 1 
VAV3                  0.056   vav 3 guanine nucleotide exchange factor isoform 1 ...
MCF2                  0.056   MCF.2 cell line derived transforming sequence isofo...
MCF2                  0.056   MCF.2 cell line derived transforming sequence isofo...
TIAM2                 0.056   T-cell lymphoma invasion and metastasis 2 isoform a ...
TIAM2                 0.056   T-cell lymphoma invasion and metastasis 2 isoform b ...
VAV1                  0.055   vav 1 guanine nucleotide exchange factor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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