Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RASSF8 Sequence: fasta or formatted (392aa) NCBI GI: 23503243
Description:

Ras association (RalGDS/AF-6) domain family (N-terminal) member 8

Referenced in:

Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         17           1
 C cysteine            1.3          5           1
 D aspartate           3.8         15           1
 E glutamate          14.0         55           4
 F phenylalanine       1.5          6           1
 G glycine             5.1         20           2
 H histidine           0.8          3           1
 I isoleucine          8.4         33           3
 K lysine              9.7         38           2
 L leucine             9.9         39           1
 M methionine          0.8          3           1
 N asparagine          3.6         14           2
 P proline             2.8         11           2
 Q glutamine           9.2         36           2
 R arginine            6.9         27           2
 S serine              4.3         17           1
 T threonine           5.6         22           2
 V valine              5.4         21           2
 W tryptophan          1.3          5           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association (RalGDS/AF-6) domain family (N-termi... 
RASSF7                0.212   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.212   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.212   Ras association (RalGDS/AF-6) domain family (N-termin...
RASSF9                0.076   Ras association (RalGDS/AF-6) domain family (N-term...
LOC400352             0.058   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.058   PREDICTED: similar to Putative golgin subfamily A m...
CEP250                0.054   centrosomal protein 2 
LOC645202             0.054   PREDICTED: hypothetical protein LOC645202 
LOC100133758          0.053   PREDICTED: hypothetical protein, partial 
LOC727832             0.051   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.051   PREDICTED: golgi autoantigen, golgin subfamily a-li...
EEA1                  0.050   early endosome antigen 1, 162kD 
LOC283767             0.050   golgi autoantigen, golgin subfamily a-like 
GCC2                  0.047   GRIP and coiled-coil domain-containing 2 
CENPE                 0.047   centromere protein E 
EPS15                 0.046   epidermal growth factor receptor pathway substrate ...
LOC283685             0.046   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.046   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CEP120                0.046   coiled-coil domain containing 100 
LOC440243             0.045   PREDICTED: Putative golgin subfamily A member 6-lik...
DST                   0.045   dystonin isoform 4 
DST                   0.045   dystonin isoform 3 
DST                   0.045   dystonin isoform 2 
DST                   0.045   dystonin isoform 1 
DST                   0.045   dystonin isoform 1eA precursor 
DEF6                  0.045   differentially expressed in FDCP 6 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press