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Search of human proteins with 23503237
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23503237 homeobox B6 [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23503237 homeobox B6 [Homo sapiens] 473 e-134
gi|13489077 homeobox A6 [Homo sapiens] 243 1e-64
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 187 8e-48
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 154 8e-38
gi|85068580 homeobox B7 [Homo sapiens] 149 1e-36
gi|24497517 homeobox A5 [Homo sapiens] 144 5e-35
gi|4504469 homeobox B5 [Homo sapiens] 144 5e-35
gi|24497556 homeobox A7 [Homo sapiens] 140 9e-34
gi|23397672 homeobox D4 [Homo sapiens] 135 3e-32
gi|13273315 homeobox B4 [Homo sapiens] 134 6e-32
gi|24497538 homeobox C4 [Homo sapiens] 132 2e-31
gi|24497540 homeobox C4 [Homo sapiens] 132 2e-31
gi|12056969 homeobox C8 [Homo sapiens] 129 2e-30
gi|11321638 homeobox C5 [Homo sapiens] 127 8e-30
gi|13273317 homeobox B8 [Homo sapiens] 125 3e-29
gi|148613882 homeobox A4 [Homo sapiens] 125 4e-29
gi|15029506 homeobox D8 [Homo sapiens] 123 1e-28
gi|19923391 homeobox D3 [Homo sapiens] 99 2e-21
gi|121114296 caudal type homeobox 1 [Homo sapiens] 94 7e-20
gi|24497547 homeobox C9 [Homo sapiens] 94 7e-20
gi|24497513 homeobox A3 isoform a [Homo sapiens] 94 9e-20
gi|13562112 homeobox A3 isoform a [Homo sapiens] 94 9e-20
gi|194363768 homeobox D9 [Homo sapiens] 94 1e-19
gi|23510366 homeobox D10 [Homo sapiens] 92 4e-19
gi|24497515 homeobox A3 isoform b [Homo sapiens] 90 1e-18
gi|182765442 homeobox A10 isoform a [Homo sapiens] 89 2e-18
gi|10140847 homeobox A2 [Homo sapiens] 89 3e-18
gi|24497526 homeobox B1 [Homo sapiens] 89 3e-18
gi|24497533 homeobox C10 [Homo sapiens] 89 4e-18
gi|169636435 caudal type homeobox 2 [Homo sapiens] 87 9e-18
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 473 bits (1217), Expect = e-134
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP 60
MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP
Sbjct: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP 60
Query: 61 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE 120
PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE
Sbjct: 61 PAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEE 120
Query: 121 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA 180
QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA
Sbjct: 121 QKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIA 180
Query: 181 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE 224
HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE
Sbjct: 181 HALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE 224
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 243 bits (620), Expect = 1e-64
Identities = 132/235 (56%), Positives = 163/235 (69%), Gaps = 13/235 (5%)
Query: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP 60
MSSYFVN TFP +L SGQ+SFLGQLPLY +GY D LR +PA YG DK + + +Y
Sbjct: 1 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGY-DALRPFPASYGASSLPDKTYTSPCFYQ 59
Query: 61 PAGGGYG-RAAPCDYGPAPAFYREKE-SACALSGADEQPP------FHPEPR---KSDCA 109
+ A +YG A FY +K+ S + SG+ +Q F PE + S
Sbjct: 60 QSNSVLACNRASYEYG-ASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSG 118
Query: 110 QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNR 169
Q K++ E ++K ++PVYPWMQRMNSC + +G GRRGRQTYTRYQTLELEKEFH+NR
Sbjct: 119 QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNR 178
Query: 170 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQAE 224
YLTRRRRIEIA+ALCLTERQIKIWFQNRRMKWKKE+KL++++Q S E+ E K E
Sbjct: 179 YLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 187 bits (474), Expect = 8e-48
Identities = 115/238 (48%), Positives = 148/238 (62%), Gaps = 23/238 (9%)
Query: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYP 60
M+SYF N + LA GQ+ L + L S+ Y DP+RH+ + YG Q++ ++T Y P
Sbjct: 1 MNSYFTNPSLSCHLAGGQD-VLPNVALNSTAY-DPVRHF-STYGAAVAQNRIYSTPFYSP 57
Query: 61 PAGGGYGRA-APCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD-KSVFGET 118
+ + P DYG + +FY+EK+ LS + H ++ AQD S G T
Sbjct: 58 QENVVFSSSRGPYDYG-SNSFYQEKDM---LSNCRQNTLGHNT--QTSIAQDFSSEQGRT 111
Query: 119 --EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRR 176
++QK S +YPWMQRMNS + +G RRGRQ Y+RYQTLELEKEFH+NRYLTRRRR
Sbjct: 112 APQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRR 171
Query: 177 IEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------ASQLSAEEEEEKQAE 224
IEIA+ALCLTERQIKIWFQNRRMKWKKES L S A L +EE+ ++ E
Sbjct: 172 IEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETE 229
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 154 bits (388), Expect = 8e-38
Identities = 81/133 (60%), Positives = 95/133 (71%), Gaps = 13/133 (9%)
Query: 105 KSDCAQD-KSVFGET--EEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLEL 161
++ AQD S G T ++QK S +YPWMQRMNS + +G RRGRQ Y+RYQTLEL
Sbjct: 15 QTSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLEL 74
Query: 162 EKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLS----------AS 211
EKEFH+NRYLTRRRRIEIA+ALCLTERQIKIWFQNRRMKWKKES L S A
Sbjct: 75 EKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATAD 134
Query: 212 QLSAEEEEEKQAE 224
L +EE+ ++ E
Sbjct: 135 SLGGKEEKREETE 147
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 149 bits (377), Expect = 1e-36
Identities = 99/235 (42%), Positives = 118/235 (50%), Gaps = 35/235 (14%)
Query: 2 SSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPP 61
S Y+ N+ F AS G P +S P YG G G + YP
Sbjct: 3 SLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPG-YGAGSGASFAASMQGLYPG 61
Query: 62 AGGGYGRAAP----CDYGPAPAFYR------EKESACALSGADEQPPFHPEPRKSDCAQD 111
GG G++A YG P+ + E+ + G + E R SD A +
Sbjct: 62 GGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAE 121
Query: 112 KSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYL 171
+ +YPWM+ S G +RGRQTYTRYQTLELEKEFHYNRYL
Sbjct: 122 SNF-----------RIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRYL 162
Query: 172 TRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK-----LLSASQLSAEEEEEK 221
TRRRRIEIAH LCLTERQIKIWFQNRRMKWKKE+K + AEEEEE+
Sbjct: 163 TRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE 217
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 144 bits (364), Expect = 5e-35
Identities = 80/171 (46%), Positives = 101/171 (59%), Gaps = 14/171 (8%)
Query: 45 PGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPR 104
P PG D + + G A D G +E SGA+E P E
Sbjct: 108 PSPGSDSHHGGKNSLSNSSG-----ASADAGST--HISSREGVGTASGAEEDAPASSE-- 158
Query: 105 KSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKE 164
++ + S + Q +YPWM++++ + + GP G+R R YTRYQTLELEKE
Sbjct: 159 QASAQSEPSPAPPAQPQ-----IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKE 213
Query: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
FH+NRYLTRRRRIEIAHALCL+ERQIKIWFQNRRMKWKK++KL S S +A
Sbjct: 214 FHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 144 bits (364), Expect = 5e-35
Identities = 105/266 (39%), Positives = 132/266 (49%), Gaps = 54/266 (20%)
Query: 1 MSSYFVNSTFPVTLASGQESFL---GQLPLYSSGYADPLRHYPAPYGPG-PGQDKGFATS 56
MSSYFVNS F +G + L G S Y DP + YG G D S
Sbjct: 1 MSSYFVNS-FSGRYPNGPDYQLLNYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVNRS 59
Query: 57 SYYPPAGGGYGRAAPCDYGPA--PAFYREKESACALSGADEQP----------PFHPEPR 104
S G G ++ PA P F R+ S+C+LS + P P P
Sbjct: 60 SASSSHFGAVGESSRAFPAPAQEPRF-RQAASSCSLSSPESLPCTNGDSHGAKPSASSPS 118
Query: 105 -KSDCAQDKSVFGETEEQKCS---------------------------------TP-VYP 129
++ A + F E +E S TP ++P
Sbjct: 119 DQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFP 178
Query: 130 WMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQ 189
WM++++ + + GP G+R R YTRYQTLELEKEFH+NRYLTRRRRIEIAHALCL+ERQ
Sbjct: 179 WMRKLHISHDMT-GPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 237
Query: 190 IKIWFQNRRMKWKKESKLLSASQLSA 215
IKIWFQNRRMKWKK++KL S S +A
Sbjct: 238 IKIWFQNRRMKWKKDNKLKSMSLATA 263
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 140 bits (353), Expect = 9e-34
Identities = 100/216 (46%), Positives = 114/216 (52%), Gaps = 39/216 (18%)
Query: 2 SSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS---- 57
SSY+VN+ F A G F P S + R + YG G G FA++
Sbjct: 3 SSYYVNALFSKYTA-GASLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPGLY 55
Query: 58 ------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQD 111
Y P GYG A YG P CA S P + K C D
Sbjct: 56 NVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGAC--D 102
Query: 112 KSVFGETE-EQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRY 170
K+ G + + +YPWM+ S GP +RGRQTYTRYQTLELEKEFH+NRY
Sbjct: 103 KTDEGALHGAAEANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFNRY 154
Query: 171 LTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
LTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE K
Sbjct: 155 LTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 135 bits (340), Expect = 3e-32
Identities = 99/231 (42%), Positives = 111/231 (48%), Gaps = 42/231 (18%)
Query: 1 MSSYFVNST-----FPVTLASGQESFLGQLPL-YSSGYAD-----PLRHYPAP------- 42
MSSY VNS FP Q +LG+ Y G A P YP P
Sbjct: 3 MSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQPF 62
Query: 43 --YGPGPGQDKGFATSSYYPPAGGGYGRAA--PCDYGPAPAFYREKESACALSGADEQPP 98
GPGPG P GG+ A PC PAP L GA
Sbjct: 63 GGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPP-------PAPLPGARAYSQ 115
Query: 99 FHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRM--NSCNSSSFGPSGRRGRQTYTRY 156
P+ S A K VYPWM+++ NS N + G +R R YTR
Sbjct: 116 SDPKQPPSGTAL-----------KQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQ 164
Query: 157 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKL 207
Q LELEKEFH+NRYLTRRRRIEIAH LCL+ERQIKIWFQNRRMKWKK+ KL
Sbjct: 165 QVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKL 215
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 134 bits (337), Expect = 6e-32
Identities = 79/176 (44%), Positives = 93/176 (52%), Gaps = 24/176 (13%)
Query: 34 DPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGA 93
DP P P P P G + + PP G P P E S+
Sbjct: 70 DPGPPPPPPPPPPPPPPPGLSPRAPAPPPAGALL--------PEPGQRCEAVSSSPPPPP 121
Query: 94 DEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQ 151
Q P HP P S C + VYPWM++++ + N + G +R R
Sbjct: 122 CAQNPLHPSPSHSACKEPV--------------VYPWMRKVHVSTVNPNYAGGEPKRSRT 167
Query: 152 TYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKL 207
YTR Q LELEKEFHYNRYLTRRRR+EIAHALCL+ERQIKIWFQNRRMKWKK+ KL
Sbjct: 168 AYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKL 223
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 132 bits (332), Expect = 2e-31
Identities = 90/231 (38%), Positives = 121/231 (52%), Gaps = 29/231 (12%)
Query: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLR------HYPAPYGPGPGQ----D 50
M S +++ FP Q S++ P +S Y R H+ Y P P + +
Sbjct: 8 MDSNYIDPKFPPCEEYSQNSYI---PEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPE 64
Query: 51 KGFATSSYYPPAGG-GYGRAAPCDYGPAPAFYREKESACA---LSGADEQPPFHPEPRKS 106
+ ++ +S P G+G A + P + +S C LSGA P P
Sbjct: 65 RQYSCTSLQGPGNSRGHGPAQAGHHHP-----EKSQSLCEPAPLSGASASP----SPAPP 115
Query: 107 DCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQTLELEKE 164
C+Q + K VYPWM++++ + N + G +R R YTR Q LELEKE
Sbjct: 116 ACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKE 174
Query: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
FHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+ +L + SA
Sbjct: 175 FHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 132 bits (332), Expect = 2e-31
Identities = 90/231 (38%), Positives = 121/231 (52%), Gaps = 29/231 (12%)
Query: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLR------HYPAPYGPGPGQ----D 50
M S +++ FP Q S++ P +S Y R H+ Y P P + +
Sbjct: 8 MDSNYIDPKFPPCEEYSQNSYI---PEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPE 64
Query: 51 KGFATSSYYPPAGG-GYGRAAPCDYGPAPAFYREKESACA---LSGADEQPPFHPEPRKS 106
+ ++ +S P G+G A + P + +S C LSGA P P
Sbjct: 65 RQYSCTSLQGPGNSRGHGPAQAGHHHP-----EKSQSLCEPAPLSGASASP----SPAPP 115
Query: 107 DCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQTLELEKE 164
C+Q + K VYPWM++++ + N + G +R R YTR Q LELEKE
Sbjct: 116 ACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKE 174
Query: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
FHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+ +L + SA
Sbjct: 175 FHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 129 bits (325), Expect = 2e-30
Identities = 100/249 (40%), Positives = 128/249 (51%), Gaps = 39/249 (15%)
Query: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPL-RHYPAPYGPGPGQDKGFATSSYY 59
MSSYFVN F A ES + Y + + R + YGPG G GF +S++
Sbjct: 1 MSSYFVNPLFSKYKAG--ESL--EPAYYDCRFPQSVGRSHALVYGPG-GSAPGFQHASHH 55
Query: 60 PP----------AGGGYGRAAPCD---YGPAPAFYR-EKESACALSGADEQPPFHPEPRK 105
+ GY + PC +G A FY E +L GA ++ P
Sbjct: 56 VQDFFHHGTSGISNSGY-QQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDC 114
Query: 106 SDCAQDKSVFGETEEQKCSTP--VYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEK 163
A S G+ + S+P ++PWM+ P R GRQTY+RYQTLELEK
Sbjct: 115 KSSANTNSSEGQGHLNQNSSPSLMFPWMR--------PHAPGRRSGRQTYSRYQTLELEK 166
Query: 164 EFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKES---KLLSAS-----QLSA 215
EF +N YLTR+RRIE++HAL LTERQ+KIWFQNRRMKWKKE+ KL A +
Sbjct: 167 EFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARDEEKVEEEG 226
Query: 216 EEEEEKQAE 224
EEEEK+ E
Sbjct: 227 NEEEEKEEE 235
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 127 bits (319), Expect = 8e-30
Identities = 75/169 (44%), Positives = 97/169 (57%), Gaps = 13/169 (7%)
Query: 45 PGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPR 104
P D+ +++ P G AAP + P Y +K + AL E+
Sbjct: 67 PRAHPDRPACSAAAAPGHAPGRDEAAPLN----PGMYSQKAARPAL----EERAKSSGEI 118
Query: 105 KSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKE 164
K + AQ G + +YPWM +++ + + G+R R +YTRYQTLELEKE
Sbjct: 119 KEEQAQTGQPAG-LSQPPAPPQIYPWMTKLHMSHETD----GKRSRTSYTRYQTLELEKE 173
Query: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQL 213
FH+NRYLTRRRRIEIA+ LCL ERQIKIWFQNRRMKWKK+SK+ S L
Sbjct: 174 FHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL 222
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 125 bits (314), Expect = 3e-29
Identities = 94/234 (40%), Positives = 117/234 (50%), Gaps = 23/234 (9%)
Query: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAP-YGPGPG---QDKGFATS 56
MSSYFVNS F +G+ + Y G+A L P YGP G Q
Sbjct: 1 MSSYFVNSLFS-KYKTGESL---RPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQE 56
Query: 57 SYYPPAG---GGYGR---AAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQ 110
Y+ P+ Y + A C P + + +L GA + K A
Sbjct: 57 FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAAS 116
Query: 111 DKSVFGETEEQKCS-TPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNR 169
E EQ S T ++PWM+ + RRGRQTY+RYQTLELEKEF +N
Sbjct: 117 GLGEEAEGSEQSPSPTQLFPWMRPQAAAGR-------RRGRQTYSRYQTLELEKEFLFNP 169
Query: 170 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEE-EKQ 222
YLTR+RRIE++HAL LTERQ+KIWFQNRRMKWKKE+ E+EE EKQ
Sbjct: 170 YLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQ 223
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 125 bits (313), Expect = 4e-29
Identities = 83/190 (43%), Positives = 99/190 (52%), Gaps = 22/190 (11%)
Query: 42 PYGPGPGQDKGFATSSYYPPA---GGGYGRAAPCDYGPA-----------PAFYREKESA 87
PYG G G PPA G +G A P PA R E+A
Sbjct: 101 PYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAA 160
Query: 88 CALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPS 145
A G P P DKS G ++ VYPWM++++ + N S G
Sbjct: 161 PATPGV---PAGGSAPACPLLLADKSPLGLKGKEPV---VYPWMKKIHVSAVNPSYNGGE 214
Query: 146 GRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKES 205
+R R YTR Q LELEKEFH+NRYLTRRRRIEIAH LCL+ERQ+KIWFQNRRMKWKK+
Sbjct: 215 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDH 274
Query: 206 KLLSASQLSA 215
KL + S+
Sbjct: 275 KLPNTKMRSS 284
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 123 bits (308), Expect = 1e-28
Identities = 83/211 (39%), Positives = 107/211 (50%), Gaps = 34/211 (16%)
Query: 40 PAPYGPGPGQDKGFATSSYYPPAGGG----YGRAAPCDYGPAP----------AFYREKE 85
P P G G G +G Y+ P GG Y A P P P A + E
Sbjct: 76 PPPSGTGCGGREGRG-QEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHGEPA 134
Query: 86 SACALSGADEQPPFHPEPRKS-----DCAQDKSVFGETEEQ--KCSTP--VYPWMQRMNS 136
QP F + DC GE + + S+P ++PWM+ +
Sbjct: 135 KFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAA 194
Query: 137 CNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 196
P RRGRQTY+R+QTLELEKEF +N YLTR+RRIE++HAL LTERQ+KIWFQN
Sbjct: 195 -------PGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQN 247
Query: 197 RRMKWKKES---KLLSASQLSAEEEEEKQAE 224
RRMKWKKE+ K + Q + E +K+A+
Sbjct: 248 RRMKWKKENNKDKFPVSRQEVKDGETKKEAQ 278
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 99.4 bits (246), Expect = 2e-21
Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 15/113 (13%)
Query: 124 STPVYPWMQ-------RMNSC--------NSSSFGPSGRRGRQTYTRYQTLELEKEFHYN 168
S ++PWM+ + NSC + S GP+ +R R YT Q +ELEKEFH+N
Sbjct: 157 SKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFN 216
Query: 169 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEK 221
RYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K A + E+
Sbjct: 217 RYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPER 269
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 94.4 bits (233), Expect = 7e-20
Identities = 74/185 (40%), Positives = 91/185 (49%), Gaps = 21/185 (11%)
Query: 40 PAPYGPGPGQDKGFATSSYY-----PPAGGGYGRAAPCD-----YGPAPAFYREKESACA 89
PAP P P Q F++ S+ PP G AP D YGP PA ++ A
Sbjct: 33 PAP-PPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLA 91
Query: 90 LSGA-DEQP-PFHPEPRKSDCAQDKSVFGETEEQKCSTPV-YPWMQRMNSCNSSSFGPSG 146
D P P P P AQ G P Y WM+R S + G SG
Sbjct: 92 FGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQRPTPYEWMRR--SVAAGGGGGSG 149
Query: 147 R-----RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 201
+ + R YT +Q LELEKEFHY+RY+T RR+ E+A L LTERQ+KIWFQNRR K
Sbjct: 150 KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKE 209
Query: 202 KKESK 206
+K +K
Sbjct: 210 RKVNK 214
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 94.4 bits (233), Expect = 7e-20
Identities = 71/186 (38%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 42 PYGPGP--GQDKGFATSSYYP----------PAGGGY---------GRAAPCDYGPAPAF 80
PYGP P G D + + P PAGG + GR A C G +
Sbjct: 79 PYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRS- 137
Query: 81 YREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSS 140
Y + D P P P A K E + S PV W+ ++
Sbjct: 138 YPDYMYGSPGELRDRAPQTLPSPEADALAGSKHK-EEKADLDPSNPVANWIHARST---- 192
Query: 141 SFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 200
R+ R YT+YQTLELEKEF +N YLTR RR E+A L LTERQ+KIWFQNRRMK
Sbjct: 193 ------RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMK 246
Query: 201 WKKESK 206
KK +K
Sbjct: 247 MKKMNK 252
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 94.0 bits (232), Expect = 9e-20
Identities = 69/193 (35%), Positives = 94/193 (48%), Gaps = 35/193 (18%)
Query: 36 LRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADE 95
LR AP P Q +PP +AAP PAP + A + A
Sbjct: 72 LRTLSAP----PSQPPSLGEPPLHPPPP----QAAP----PAPQPPQPAPQPPAPTPAAP 119
Query: 96 QPPFHPEPRKSDCAQDKSVFGETEEQKCSTP-----VYPWMQ--RMNSCNSSSFGPSG-- 146
PP P ++ + + + + ++P ++PWM+ R N+ +S SG
Sbjct: 120 PPPSSASPPQN-ASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES 178
Query: 147 -------------RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW 193
+R R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIW
Sbjct: 179 CAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIW 238
Query: 194 FQNRRMKWKKESK 206
FQNRRMK+KK+ K
Sbjct: 239 FQNRRMKYKKDQK 251
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 94.0 bits (232), Expect = 9e-20
Identities = 69/193 (35%), Positives = 94/193 (48%), Gaps = 35/193 (18%)
Query: 36 LRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADE 95
LR AP P Q +PP +AAP PAP + A + A
Sbjct: 72 LRTLSAP----PSQPPSLGEPPLHPPPP----QAAP----PAPQPPQPAPQPPAPTPAAP 119
Query: 96 QPPFHPEPRKSDCAQDKSVFGETEEQKCSTP-----VYPWMQ--RMNSCNSSSFGPSG-- 146
PP P ++ + + + + ++P ++PWM+ R N+ +S SG
Sbjct: 120 PPPSSASPPQN-ASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGES 178
Query: 147 -------------RRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW 193
+R R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIW
Sbjct: 179 CAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIW 238
Query: 194 FQNRRMKWKKESK 206
FQNRRMK+KK+ K
Sbjct: 239 FQNRRMKYKKDQK 251
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 93.6 bits (231), Expect = 1e-19
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 40/163 (24%)
Query: 44 GPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEP 103
G GPG G AT + GG + C P P C+L ++Q H +P
Sbjct: 223 GTGPGAGIGAATGT------GGSSEPSACSDHPIPG--------CSLKEEEKQ---HSQP 265
Query: 104 RKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEK 163
++ ++ + P W+ ++ R+ R YT+YQTLELEK
Sbjct: 266 QQ-------------QQLDPNNPAANWIHARST----------RKKRCPYTKYQTLELEK 302
Query: 164 EFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
EF +N YLTR RR E+A L LTERQ+KIWFQNRRMK KK SK
Sbjct: 303 EFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSK 345
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 92.0 bits (227), Expect = 4e-19
Identities = 53/120 (44%), Positives = 69/120 (57%), Gaps = 17/120 (14%)
Query: 103 PRKSDCAQDKSVFG-------ETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTR 155
P + C + SV EE K TP W+ SGR+ R YT+
Sbjct: 226 PEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSNWLT----------AKSGRKKRCPYTK 275
Query: 156 YQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
+QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK S+ +L+A
Sbjct: 276 HQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTA 335
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 90.1 bits (222), Expect = 1e-18
Identities = 42/62 (67%), Positives = 50/62 (80%)
Query: 145 SGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 204
S +R R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+
Sbjct: 32 SSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD 91
Query: 205 SK 206
K
Sbjct: 92 QK 93
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 89.4 bits (220), Expect = 2e-18
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 16/133 (12%)
Query: 83 EKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSF 142
++E+ + S A+E P E K+ + +K G ++ + + W+
Sbjct: 289 DEEAHASSSAAEELSPAPSESSKA--SPEKDSLGNSKGENAAN----WLT---------- 332
Query: 143 GPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 202
SGR+ R YT++QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK K
Sbjct: 333 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLK 392
Query: 203 KESKLLSASQLSA 215
K ++ +L+A
Sbjct: 393 KMNRENRIRELTA 405
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 89.0 bits (219), Expect = 3e-18
Identities = 48/91 (52%), Positives = 58/91 (63%), Gaps = 12/91 (13%)
Query: 143 GPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 202
G RR R YT Q LELEKEFH+N+YL R RR+EIA L LTERQ+K+WFQNRRMK K
Sbjct: 140 GGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHK 199
Query: 203 KES------------KLLSASQLSAEEEEEK 221
+++ K L S+ E+EEEK
Sbjct: 200 RQTQCKENQNSEGKCKSLEDSEKVEEDEEEK 230
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 89.0 bits (219), Expect = 3e-18
Identities = 74/212 (34%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 8 STFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGG--- 64
ST V S S G P S P ++YP G G F SSY GG
Sbjct: 70 STLGVPFPSSAPS--GYAPAACSPSYGPSQYYPL--GQSEGDGGYFHPSSYGAQLGGLSD 125
Query: 65 --GYGRAAPCDYGPA-PAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQ 121
G G A P Y P P + E+ ++ A + AD ++DK +E
Sbjct: 126 GYGAGGAGPGPYPPQHPPYGNEQTASFAPAYADL------------LSEDKETPCPSEPN 173
Query: 122 KCSTPVYPWMQ------RMNSCNSSSFG-PSGRRGRQTYTRYQTLELEKEFHYNRYLTRR 174
+ + WM+ + + G PSG R +T Q ELEKEFH+N+YL+R
Sbjct: 174 TPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLR--TNFTTRQLTELEKEFHFNKYLSRA 231
Query: 175 RRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
RR+EIA L L E Q+KIWFQNRRMK KK +
Sbjct: 232 RRVEIAATLELNETQVKIWFQNRRMKQKKRER 263
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 88.6 bits (218), Expect = 4e-18
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 76 PAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN 135
P+P + ++S G+ + + +D + D S EE K W+
Sbjct: 209 PSPNEIKTEQSLAGPKGSPSESE-KERAKAADSSPDTSDNEAKEEIKAENTTGNWLT--- 264
Query: 136 SCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQ 195
SGR+ R YT++QTLELEKEF +N YLTR RR+EI+ + LT+RQ+KIWFQ
Sbjct: 265 -------AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQ 317
Query: 196 NRRMKWKKESK 206
NRRMK KK ++
Sbjct: 318 NRRMKLKKMNR 328
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 87.4 bits (215), Expect = 9e-18
Identities = 67/192 (34%), Positives = 91/192 (47%), Gaps = 19/192 (9%)
Query: 26 PLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYY----PPAGGGYGRAAPCDYGPA--PA 79
P + + Y PLR Y PG A + P A GY ++P DY P P
Sbjct: 63 PSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGY--SSPADYHPHHHPH 120
Query: 80 FYREKESA---CALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQR--M 134
+ +A CA P P P + A+ S G+ + WM++
Sbjct: 121 HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRN------LCEWMRKPAQ 174
Query: 135 NSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWF 194
S S + + R YT +Q LELEKEFHY+RY+T RR+ E+A L L+ERQ+KIWF
Sbjct: 175 QSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWF 234
Query: 195 QNRRMKWKKESK 206
QNRR K +K +K
Sbjct: 235 QNRRAKERKINK 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,962,279
Number of Sequences: 37866
Number of extensions: 635711
Number of successful extensions: 2733
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 2309
Number of HSP's gapped (non-prelim): 484
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.