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Search of human proteins with 229577313
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|229577313 zona pellucida binding protein isoform 1 [Homo
sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|229577313 zona pellucida binding protein isoform 1 [Homo sapi... 717 0.0
gi|229577315 zona pellucida binding protein isoform 2 [Homo sapi... 711 0.0
gi|40556389 zona pellucida binding protein 2 isoform 2 [Homo sap... 207 1e-53
gi|84875535 zona pellucida binding protein 2 isoform 1 [Homo sap... 199 2e-51
gi|139948432 adlican [Homo sapiens] 37 0.035
gi|153791466 AMIGO protein [Homo sapiens] 33 0.38
gi|4827022 contactin 2 precursor [Homo sapiens] 33 0.50
gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens] 32 0.65
gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 32 0.85
gi|119220552 sidekick 1 [Homo sapiens] 32 0.85
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens] 32 1.1
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens] 32 1.1
gi|24429588 zinc finger protein 532 [Homo sapiens] 32 1.1
gi|120587023 down-regulated in metastasis [Homo sapiens] 31 1.9
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name... 31 1.9
gi|148922949 complement component (3b/4b) receptor 1-like [Homo ... 30 2.5
gi|239754399 PREDICTED: hypothetical protein [Homo sapiens] 30 3.2
gi|239748964 PREDICTED: hypothetical protein XP_002346869 [Homo ... 30 3.2
gi|239742984 PREDICTED: hypothetical protein XP_002342711 [Homo ... 30 3.2
gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens] 30 4.2
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens] 30 4.2
gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens] 30 4.2
gi|14591902 RecQ protein-like [Homo sapiens] 29 5.5
gi|14591904 RecQ protein-like [Homo sapiens] 29 5.5
gi|7657361 contactin 6 [Homo sapiens] 29 5.5
gi|15029530 leucine rich repeat containing 4 [Homo sapiens] 29 5.5
gi|46411159 TEA domain family member 4 isoform 3 [Homo sapiens] 29 7.2
gi|46411156 TEA domain family member 4 isoform 2 [Homo sapiens] 29 7.2
gi|46411152 TEA domain family member 4 isoform 1 [Homo sapiens] 29 7.2
gi|221316650 ephrin receptor EphA1 [Homo sapiens] 28 9.4
>gi|229577313 zona pellucida binding protein isoform 1 [Homo
sapiens]
Length = 351
Score = 717 bits (1852), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MEAFALGPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFRLTKDSV 60
MEAFALGPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFRLTKDSV
Sbjct: 1 MEAFALGPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFRLTKDSV 60
Query: 61 KIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENRTAQIT 120
KIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENRTAQIT
Sbjct: 61 KIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENRTAQIT 120
Query: 121 STGSLVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAA 180
STGSLVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAA
Sbjct: 121 STGSLVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAA 180
Query: 181 PCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLD 240
PCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLD
Sbjct: 181 PCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLD 240
Query: 241 TEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQLPQIYYIEGTLQMVWIN 300
TEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQLPQIYYIEGTLQMVWIN
Sbjct: 241 TEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQLPQIYYIEGTLQMVWIN 300
Query: 301 RCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTCL 351
RCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTCL
Sbjct: 301 RCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTCL 351
>gi|229577315 zona pellucida binding protein isoform 2 [Homo
sapiens]
Length = 350
Score = 711 bits (1836), Expect = 0.0
Identities = 350/351 (99%), Positives = 350/351 (99%), Gaps = 1/351 (0%)
Query: 1 MEAFALGPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFRLTKDSV 60
MEAFALGPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFRLTKDSV
Sbjct: 1 MEAFALGPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFRLTKDSV 60
Query: 61 KIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENRTAQIT 120
KIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVS ENRTAQIT
Sbjct: 61 KIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVS-ENRTAQIT 119
Query: 121 STGSLVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAA 180
STGSLVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAA
Sbjct: 120 STGSLVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAA 179
Query: 181 PCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLD 240
PCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLD
Sbjct: 180 PCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLD 239
Query: 241 TEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQLPQIYYIEGTLQMVWIN 300
TEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQLPQIYYIEGTLQMVWIN
Sbjct: 240 TEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQLPQIYYIEGTLQMVWIN 299
Query: 301 RCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTCL 351
RCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTCL
Sbjct: 300 RCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTCL 350
>gi|40556389 zona pellucida binding protein 2 isoform 2 [Homo
sapiens]
Length = 338
Score = 207 bits (526), Expect = 1e-53
Identities = 119/321 (37%), Positives = 174/321 (54%), Gaps = 29/321 (9%)
Query: 47 VRLPRAFRLTKDSVKIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPK 106
V+ PR F L I G T P K YV LHQ SP ++C+ +L E++DP++ W GP
Sbjct: 18 VQCPR-FTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPN 76
Query: 107 GKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLEYKP----TVEEIVKRLQLKYAIY 162
K ++ NR IT TG L+ ++F E +SG+YTC L YK T EE + + + ++
Sbjct: 77 EKTLTGNNRI-NITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVF 135
Query: 163 AYREPHYYYQFTARYHAAPCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQ 222
AYREP Y YQ R+ C YN F + L +IL L+ DLSC + +CH V++
Sbjct: 136 AYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIP 195
Query: 223 RAGLQNELFFAFSVS------------SLDTEKGPKRCTDHNCEPYKRLFKAKNLIERFF 270
GL +ELF AF V+ S+D E T+HN + +A++ IE FF
Sbjct: 196 EHGLIHELFIAFQVNPFAPGWKGACNGSVDCED----TTNHN------ILQARDRIEDFF 245
Query: 271 NQQVEILGRRAEQ-LPQIYYIEGTLQMVWINRCFPGYGMNVQQHPKCPECCVICSPGSYN 329
Q I + LP +++++ +LQ+V ++ C PG+G N + H C CCV+CSP +++
Sbjct: 246 RSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFS 305
Query: 330 PRDGIHCLQCNSSLVYGAKTC 350
P + C C S L YGAK+C
Sbjct: 306 PDVNVTCQTCVSVLTYGAKSC 326
>gi|84875535 zona pellucida binding protein 2 isoform 1 [Homo
sapiens]
Length = 316
Score = 199 bits (507), Expect = 2e-51
Identities = 110/297 (37%), Positives = 164/297 (55%), Gaps = 28/297 (9%)
Query: 71 KAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENRTAQITSTGSLVFQNF 130
K YV LHQ SP ++C+ +L E++DP++ W GP K ++ NR IT TG L+ ++F
Sbjct: 19 KIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI-NITETGQLMVKDF 77
Query: 131 EESMSGIYTCFLEYKP----TVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAPCNSIY 186
E +SG+YTC L YK T EE + + + ++AYREP Y YQ R+ C Y
Sbjct: 78 LEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRY 137
Query: 187 NISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVS--------- 237
N F + L +IL L+ DLSC + +CH V++ GL +ELF AF V+
Sbjct: 138 NDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGA 197
Query: 238 ---SLDTEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQ-LPQIYYIEGT 293
S+D E T+HN + +A++ IE FF Q I + LP +++++ +
Sbjct: 198 CNGSVDCED----TTNHN------ILQARDRIEDFFRSQAYIFYHNFNKTLPAMHFVDHS 247
Query: 294 LQMVWINRCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTC 350
LQ+V ++ C PG+G N + H C CCV+CSP +++P + C C S L YGAK+C
Sbjct: 248 LQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFSPDVNVTCQTCVSVLTYGAKSC 304
>gi|139948432 adlican [Homo sapiens]
Length = 2828
Score = 36.6 bits (83), Expect = 0.035
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 98 PSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFL 142
P W P KV+ + QI G+L+ Q + S SG YTC +
Sbjct: 2376 PKVTWLSPTNKVIPTSSEKYQIYQDGTLLIQKAQRSDSGNYTCLV 2420
Score = 31.2 bits (69), Expect = 1.5
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 98 PSFQWYGPKGKVVSVE----NRTAQITSTGSLVFQNFEESMSGIYTCFLEYKPTVEEIVK 153
PS W P G ++ + I S+G L ++ E S SG+Y C + + ++ +V
Sbjct: 509 PSIFWVLPDGSILKAPMDDPDSKFSILSSGWLRIKSMEPSDSGLYQCIAQVRDEMDRMVY 568
Query: 154 RL 155
R+
Sbjct: 569 RV 570
>gi|153791466 AMIGO protein [Homo sapiens]
Length = 493
Score = 33.1 bits (74), Expect = 0.38
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 102 WYGPKGKVV--SVENRTAQITSTGSLVFQNFEESMSGIYTCF 141
W P + V V N T ++ GSL+FQ + G+YTC+
Sbjct: 301 WVTPSNERVLDEVTNGTVSVSKDGSLLFQQVQVEDGGVYTCY 342
>gi|4827022 contactin 2 precursor [Homo sapiens]
Length = 1040
Score = 32.7 bits (73), Expect = 0.50
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 106 KGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLE 143
KG + V + +T G+L+ +N S G YTCF E
Sbjct: 454 KGTEILVNSSRVTVTPDGTLIIRNISRSDEGKYTCFAE 491
>gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens]
Length = 716
Score = 32.3 bits (72), Expect = 0.65
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 32 ISAFLVRVPSSVGHLVRLPRAFRLTKDSVKIVGSTSFPVKAYVMLHQKSPHVLCVTQQLR 91
+S F P GH V+ ++ + ++ SFP + V + V R
Sbjct: 395 LSMFCAMPPEYKGHQVKEVLIQDSSEQCLPMISHDSFPNRLNVDIGTT------VFLDCR 448
Query: 92 NAELIDPSFQWYGPKGKVVSVENRTAQ--ITSTGSLVFQNFEESMSGIYTC 140
+P W P G ++VE + + ++S G+L N + SG YTC
Sbjct: 449 AMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEISNIQIEDSGRYTC 499
>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
Length = 1447
Score = 32.0 bits (71), Expect = 0.85
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 98 PSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLEYK 145
PSF W + +V+ + ++ + +L+ N + SG+YTC + YK
Sbjct: 269 PSFTWLRGE-EVIQLRSKKYSLLGGSNLLISNVTDDDSGMYTCVVTYK 315
>gi|119220552 sidekick 1 [Homo sapiens]
Length = 2213
Score = 32.0 bits (71), Expect = 0.85
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 98 PSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCF 141
P+ QWY + ++N ++ ++G L Q SGI+ CF
Sbjct: 416 PTLQWYKDAISISRLQNPRYKVLASGGLRIQKLRPEDSGIFQCF 459
>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
Length = 1018
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 98 PSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLE 143
P F W KG V + I GSL N + GIYTCF E
Sbjct: 444 PKFSW--SKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAE 487
>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
Length = 1007
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 98 PSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLE 143
P F W KG V + I GSL N + GIYTCF E
Sbjct: 433 PKFSW--SKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAE 476
>gi|24429588 zinc finger protein 532 [Homo sapiens]
Length = 1301
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 29/144 (20%)
Query: 217 HRVKMQRAGLQNELFFAFSVS----SLDTEKGPKRCTDHN--CEPYKRLFKAKNLIERFF 270
H V ++G+ + A S + ++ ++ P + H+ C +F+ + + F
Sbjct: 714 HTVTKIQSGITGTVISAPSSTPITPAMPLDEDPSKLCRHSLKCLECNEVFQDETSLATHF 773
Query: 271 NQQVEILGRRAEQLPQIYYIEGTLQMVWINRCFPGYGMNVQQHPK---CPECCVICSPG- 326
Q + G++ + QM+ N+C + QH CPEC IC
Sbjct: 774 QQAADTSGQKTCTI---------CQMLLPNQCSYASHQRIHQHKSPYTCPECGAICRSVH 824
Query: 327 ----------SYNPRDGIHCLQCN 340
Y R G C+ CN
Sbjct: 825 FQTHVTKNCLHYTRRVGFRCVHCN 848
>gi|120587023 down-regulated in metastasis [Homo sapiens]
Length = 2785
Score = 30.8 bits (68), Expect = 1.9
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 125 LVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAPCNS 184
LV Q + Y F E+ T+ I++ + +A+ Y Y++ R +S
Sbjct: 110 LVVQLARDLQMDFYPHFPEFFLTITSILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSS 169
Query: 185 IYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLDTEKG 244
IY+ + S LL I +E M++ +N L F++ LD +K
Sbjct: 170 IYS---------MYSTLLAHKKLHIRNFAAESFTFLMRKVSDKNAL---FNLMFLDLDKH 217
Query: 245 PKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRR 280
P++ ++ +N+ Q V+++ R+
Sbjct: 218 PEKVEGVGQLLFEMCKGVRNMFHSCTGQAVKLILRK 253
>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
family member (tag-184) [Homo sapiens]
Length = 2785
Score = 30.8 bits (68), Expect = 1.9
Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 125 LVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAPCNS 184
LV Q + Y F E+ T+ I++ + +A+ Y Y++ R +S
Sbjct: 110 LVVQLARDLQMDFYPHFPEFFLTITSILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSS 169
Query: 185 IYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLDTEKG 244
IY+ + S LL I +E M++ +N L F++ LD +K
Sbjct: 170 IYS---------MYSTLLAHKKLHIRNFAAESFTFLMRKVSDKNAL---FNLMFLDLDKH 217
Query: 245 PKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRR 280
P++ ++ +N+ Q V+++ R+
Sbjct: 218 PEKVEGVGQLLFEMCKGVRNMFHSCTGQAVKLILRK 253
>gi|148922949 complement component (3b/4b) receptor 1-like [Homo
sapiens]
Length = 569
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 14/45 (31%)
Query: 301 RCFPGYGMNVQQHPKC----------PECCVICSPGSYNPRDGIH 335
RC PG+GM H KC P C +C P P D +H
Sbjct: 257 RCQPGFGMKGPSHVKCQALNKWEPELPSCSRVCQP----PPDVLH 297
>gi|239754399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 7 GPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFR 54
G RR RRR AA +L +R +LL + ++ R + V PR R
Sbjct: 259 GRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLR 306
>gi|239748964 PREDICTED: hypothetical protein XP_002346869 [Homo
sapiens]
Length = 414
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 7 GPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFR 54
G RR RRR AA +L +R +LL + ++ R + V PR R
Sbjct: 259 GRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLR 306
>gi|239742984 PREDICTED: hypothetical protein XP_002342711 [Homo
sapiens]
Length = 414
Score = 30.0 bits (66), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 7 GPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFR 54
G RR RRR AA +L +R +LL + ++ R + V PR R
Sbjct: 259 GRKRRQRRRPAAAAALHARRRLLLLVKSYFARGGTGAEPGVTSPRGLR 306
>gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]
Length = 442
Score = 29.6 bits (65), Expect = 4.2
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 34 AFLVRVPSSVGHLVRLPRAFRLTKDSVKI-VGSTSFPVK-AYVMLHQKSPHVLCVTQQLR 91
A LVRV SS G L K VK VG+ ++ + +++ HV+ T+
Sbjct: 128 AVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG 187
Query: 92 NAEL-ID--PSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIY 138
NA L +D P + Y P G+ +++ N A I G Q F+ +SG+Y
Sbjct: 188 NATLQVDSWPVIERY-PAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLY 236
>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
Length = 1477
Score = 29.6 bits (65), Expect = 4.2
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 34 AFLVRVPSSVGHLVRLPRAFRLTKDSVKI-VGSTSFPVK-AYVMLHQKSPHVLCVTQQLR 91
A LVRV SS G L K VK VG+ ++ + +++ HV+ T+
Sbjct: 1163 AVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG 1222
Query: 92 NAEL-ID--PSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIY 138
NA L +D P + Y P G+ +++ N A I G Q F+ +SG+Y
Sbjct: 1223 NATLQVDSWPVIERY-PAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLY 1271
>gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]
Length = 2623
Score = 29.6 bits (65), Expect = 4.2
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 8 PARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGH-LVRLPRAFRLTKDSVKIVGST 66
P G+ G+L+ + A ++ + +SVGH L+ +P + T
Sbjct: 2477 PQINGKYILHDNGTLVIKEATAYDRGNYICKAQNSVGHTLITVPVMIVAYPPRI-----T 2531
Query: 67 SFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENR-----TAQITS 121
+ P ++ V + + CV + P W P ++S ++ + Q+
Sbjct: 2532 NRPPRSIVTRTGAAFQLHCVALGVPK-----PEITWEMPDHSLLSTASKERTHGSEQLHL 2586
Query: 122 TGSLVFQNFEESMSGIYTC 140
G+LV QN + S SGIY C
Sbjct: 2587 QGTLVIQNPQTSDSGIYKC 2605
>gi|14591902 RecQ protein-like [Homo sapiens]
Length = 649
Score = 29.3 bits (64), Expect = 5.5
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 203 LDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLDTEKGPKRCTDHNCEPYKRLFKA 262
L + + +LL +E H + MQ F A S + +E+G K+ + N +++ KA
Sbjct: 570 LKIGPKANLLNNEAHAITMQVTKSTQNSFRAESSQTCHSEQGDKKMEEKNSGNFQK--KA 627
Query: 263 KNLIER 268
N++++
Sbjct: 628 ANMLQQ 633
>gi|14591904 RecQ protein-like [Homo sapiens]
Length = 649
Score = 29.3 bits (64), Expect = 5.5
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 203 LDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLDTEKGPKRCTDHNCEPYKRLFKA 262
L + + +LL +E H + MQ F A S + +E+G K+ + N +++ KA
Sbjct: 570 LKIGPKANLLNNEAHAITMQVTKSTQNSFRAESSQTCHSEQGDKKMEEKNSGNFQK--KA 627
Query: 263 KNLIER 268
N++++
Sbjct: 628 ANMLQQ 633
>gi|7657361 contactin 6 [Homo sapiens]
Length = 1028
Score = 29.3 bits (64), Expect = 5.5
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 97 DPSFQW-YGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLEYKPTVEEI---- 151
D S+ W + V +NR TG+L E S G YTCF+ K +
Sbjct: 152 DLSYAWTFNDNPLYVQEDNRRFVSQETGNLYIAKVEPSDVGNYTCFITNKEAQRSVQGPP 211
Query: 152 VKRLQLKYAIYAYREPHYYYQFTARYHAAPCNSI 185
+Q + EP +F AA +S+
Sbjct: 212 TPLVQRTDGVMGEYEPKIEVRFPETIQAAKDSSV 245
>gi|15029530 leucine rich repeat containing 4 [Homo sapiens]
Length = 653
Score = 29.3 bits (64), Expect = 5.5
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 99 SFQWYGPKGKVVSVENRTAQIT--STGSLVFQNFEESMSGIYTCFL 142
S +W P G V+S +R +I+ + G+L F + S +G+YTC +
Sbjct: 381 SVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426
>gi|46411159 TEA domain family member 4 isoform 3 [Homo sapiens]
Length = 305
Score = 28.9 bits (63), Expect = 7.2
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 126 VFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAP-CNS 184
V +E + I TC + +++V++++ +YA Y HY Y R H +P C
Sbjct: 187 VSSQYESPENMIITCSTKVCSFGKQVVEKVETEYA--RYENGHYSY----RIHRSPLCE- 239
Query: 185 IYNISFEKKLLQILSKLLLD 204
Y I+F KL + K +++
Sbjct: 240 -YMINFIHKLKHLPEKYMMN 258
>gi|46411156 TEA domain family member 4 isoform 2 [Homo sapiens]
Length = 391
Score = 28.9 bits (63), Expect = 7.2
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 126 VFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAP-CNS 184
V +E + I TC + +++V++++ +YA Y HY Y R H +P C
Sbjct: 273 VSSQYESPENMIITCSTKVCSFGKQVVEKVETEYA--RYENGHYSY----RIHRSPLCE- 325
Query: 185 IYNISFEKKLLQILSKLLLD 204
Y I+F KL + K +++
Sbjct: 326 -YMINFIHKLKHLPEKYMMN 344
>gi|46411152 TEA domain family member 4 isoform 1 [Homo sapiens]
Length = 434
Score = 28.9 bits (63), Expect = 7.2
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 126 VFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAP-CNS 184
V +E + I TC + +++V++++ +YA Y HY Y R H +P C
Sbjct: 316 VSSQYESPENMIITCSTKVCSFGKQVVEKVETEYA--RYENGHYSY----RIHRSPLCE- 368
Query: 185 IYNISFEKKLLQILSKLLLD 204
Y I+F KL + K +++
Sbjct: 369 -YMINFIHKLKHLPEKYMMN 387
>gi|221316650 ephrin receptor EphA1 [Homo sapiens]
Length = 976
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 302 CFPGYGMNVQQHPKCPECCVICSPGSYN-PRDGIHCLQC 339
C PGY + E CV C GSY D HCL C
Sbjct: 264 CEPGY-----EEGGSGEACVACPSGSYRMDMDTPHCLTC 297
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,167,723
Number of Sequences: 37866
Number of extensions: 563449
Number of successful extensions: 1953
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1920
Number of HSP's gapped (non-prelim): 47
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.