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Search of human proteins with 22779873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22779873 family with sequence similarity 89, member B
isoform 2 [Homo sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22779873 family with sequence similarity 89, member B isoform... 367 e-102
gi|149192858 family with sequence similarity 89, member B isofor... 357 2e-99
gi|149192853 family with sequence similarity 89, member B isofor... 199 1e-51
gi|38348390 family with sequence similarity 89, member A [Homo s... 100 1e-21
gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens] 33 0.098
gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens] 33 0.098
gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo... 33 0.13
gi|239752278 PREDICTED: hypothetical protein [Homo sapiens] 32 0.22
gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo ... 32 0.22
gi|87196343 PDZ domain containing 2 [Homo sapiens] 32 0.22
gi|91208437 GEM interacting protein [Homo sapiens] 32 0.22
gi|116517292 cut-like 2 [Homo sapiens] 32 0.28
gi|13899229 nuclear factor of kappa light polypeptide gene enhan... 32 0.28
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 32 0.37
gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.49
gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.49
gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.49
gi|239755705 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 31 0.63
gi|51317366 myosin XVIIIB [Homo sapiens] 31 0.63
gi|239755585 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|224922839 hypothetical protein LOC138311 [Homo sapiens] 30 1.1
gi|239750217 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo ... 30 1.1
gi|194097477 neuronal PAS domain protein 4 [Homo sapiens] 30 1.1
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 30 1.1
gi|146134388 YLP motif containing 1 [Homo sapiens] 30 1.1
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 30 1.1
gi|19923352 NK3 homeobox 1 [Homo sapiens] 30 1.4
>gi|22779873 family with sequence similarity 89, member B isoform 2
[Homo sapiens]
Length = 176
Score = 367 bits (941), Expect = e-102
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR
Sbjct: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
Query: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLYESIQDYKHLCQDLSFCQD 120
APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLYESIQDYKHLCQDLSFCQD
Sbjct: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLYESIQDYKHLCQDLSFCQD 120
Query: 121 LSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHISL 176
LSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHISL
Sbjct: 121 LSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHISL 176
>gi|149192858 family with sequence similarity 89, member B isoform 1
[Homo sapiens]
Length = 189
Score = 357 bits (917), Expect = 2e-99
Identities = 176/189 (93%), Positives = 176/189 (93%), Gaps = 13/189 (6%)
Query: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR
Sbjct: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
Query: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEM-------------LWGLYESIQD 107
APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEM LWGLYESIQD
Sbjct: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMVGLRQLDMSLLCQLWGLYESIQD 120
Query: 108 YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW 167
YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW
Sbjct: 121 YKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQW 180
Query: 168 LQDAFHISL 176
LQDAFHISL
Sbjct: 181 LQDAFHISL 189
>gi|149192853 family with sequence similarity 89, member B isoform
3 [Homo sapiens]
Length = 154
Score = 199 bits (505), Expect = 1e-51
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR
Sbjct: 1 MNGLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAAR 60
Query: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEML 98
APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEML
Sbjct: 61 APDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEML 98
>gi|38348390 family with sequence similarity 89, member A [Homo
sapiens]
Length = 184
Score = 99.8 bits (247), Expect = 1e-21
Identities = 72/158 (45%), Positives = 85/158 (53%), Gaps = 42/158 (26%)
Query: 9 APGGAG------CALAGLPPLPRGLSGLLN-ASGGS----WRELERVYSQRSRIHDELSR 57
APG AG + GLPPLP+ LSGLL+ ASGG WR LER+Y+Q+SRI DELSR
Sbjct: 7 APGAAGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDELSR 66
Query: 58 AARAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEM-------------LWGLYES 104
GP G A AA P +P NLD+ALA LRKEM L+ LYES
Sbjct: 67 G-----GP----GGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYES 117
Query: 105 IQDYKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEE 142
IQ+YK CQ S D +Y + G D+EE
Sbjct: 118 IQEYKGACQAAS---------SPDCTYALENGFFDEEE 146
>gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens]
Length = 1474
Score = 33.5 bits (75), Expect = 0.098
Identities = 38/127 (29%), Positives = 50/127 (39%), Gaps = 25/127 (19%)
Query: 51 IHDEL---SRAARAPDGPRH-------AAGAANAGPAAGPRRPVNLDSALAALRKEMLWG 100
+H+ L S AA+ P P G AG G R ++ AL + +L
Sbjct: 1289 VHNNLRGSSSAAKGPPPPEPPVPPVPGGGGEEEAGGPGGADR-AEIELLYKALEEPLLLP 1347
Query: 101 -----LYESIQDYKHLC--QDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDAS------ 147
LY+S D C +D + + LSS DS Y A L D PD+S
Sbjct: 1348 RAQSVLYQSDLDESESCTAEDGATSRPLSSPPGRDSLYASGANLRDSPSYPDSSPEGPSE 1407
Query: 148 -LPPDPP 153
LPP PP
Sbjct: 1408 ALPPPPP 1414
>gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens]
Length = 1469
Score = 33.5 bits (75), Expect = 0.098
Identities = 38/127 (29%), Positives = 50/127 (39%), Gaps = 25/127 (19%)
Query: 51 IHDEL---SRAARAPDGPRH-------AAGAANAGPAAGPRRPVNLDSALAALRKEMLWG 100
+H+ L S AA+ P P G AG G R ++ AL + +L
Sbjct: 1284 VHNNLRGSSSAAKGPPPPEPPVPPVPGGGGEEEAGGPGGADR-AEIELLYKALEEPLLLP 1342
Query: 101 -----LYESIQDYKHLC--QDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDAS------ 147
LY+S D C +D + + LSS DS Y A L D PD+S
Sbjct: 1343 RAQSVLYQSDLDESESCTAEDGATSRPLSSPPGRDSLYASGANLRDSPSYPDSSPEGPSE 1402
Query: 148 -LPPDPP 153
LPP PP
Sbjct: 1403 ALPPPPP 1409
>gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo
sapiens]
Length = 173
Score = 33.1 bits (74), Expect = 0.13
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 19 GLPPLPR--GLSGLLNASGGSWRELERVYSQRSRIHDELSRAARAPDG-PRHAAGAANAG 75
G PLPR G SGG+ R R H +RA R P G P HA GAA
Sbjct: 97 GQQPLPRRPGHDDGQRPSGGAAAAPRRGAQLRRPRHSHPTRARRCPGGLPGHAGGAAPGR 156
Query: 76 PAAGPRR 82
AAG R
Sbjct: 157 GAAGRAR 163
>gi|239752278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.22
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 3 GLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGG---SWRELERVYSQRSRIHDELSRAA 59
GLP + APG G LP LP LS + + SGG +W + + E
Sbjct: 168 GLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQ 227
Query: 60 RAPDGPRHAAGAANAG 75
A PR A G A G
Sbjct: 228 GARGSPRGADGLAKLG 243
>gi|239746791 PREDICTED: hypothetical protein XP_002343850 [Homo
sapiens]
Length = 252
Score = 32.3 bits (72), Expect = 0.22
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 3 GLPSAEAPGGAGCALAGLPPLPRGLSGLLNASGG---SWRELERVYSQRSRIHDELSRAA 59
GLP + APG G LP LP LS + + SGG +W + + E
Sbjct: 168 GLPGSRAPGLPGSRFFALPSLPPPLSVVTSRSGGPGAAWLARAPLRAAGEIQVSERVEPQ 227
Query: 60 RAPDGPRHAAGAANAG 75
A PR A G A G
Sbjct: 228 GARGSPRGADGLAKLG 243
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 32.3 bits (72), Expect = 0.22
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 103 ESIQDYKHLCQDLSFCQDLS---SSLHSDSSYPPDAGLSDDEEPPDASL-------PPDP 152
+SI KH + +F + S SS H DS+ +GL D EP +S+ DP
Sbjct: 1505 DSINPDKHFTVNKNFLSNYSRNFSSFHEDSTSL--SGLGDSTEPSLSSMYGDAEDSSSDP 1562
Query: 153 PPLTVPQTHNARDQWLQDAFHISL 176
LT +ARD W +SL
Sbjct: 1563 ESLTEAPRASARDGWSPPRSRVSL 1586
>gi|91208437 GEM interacting protein [Homo sapiens]
Length = 970
Score = 32.3 bits (72), Expect = 0.22
Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 16/110 (14%)
Query: 60 RAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLYESIQDYKHLCQDLSFCQ 119
R PDGPR AA+A P LDS A E L YE I L Q
Sbjct: 720 RPPDGPR----AASAIPVT-----CLLDSGHQAQLVEFLIVHYEQIFGMDELPQATEPPP 770
Query: 120 DLSSSLH---SDSSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQ 166
SS + SS PP L D +PP + P P PQ H+ +Q
Sbjct: 771 QDSSPAPGPLTTSSQPPPPHLDPDSQPPVLASDPGPD----PQHHSTLEQ 816
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 32.0 bits (71), Expect = 0.28
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 39 RELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEML 98
RE+E + Q + ++ + A +P GP + N +GPR L++ALA+ +E+L
Sbjct: 258 REVESLREQLASVNSSIRLACCSPQGP--SGDKVNFTLCSGPR----LEAALASKDREIL 311
Query: 99 WGLYESIQDYKHLCQDLSFCQDLSSSLHSD 128
++D +HL L ++ S++ +D
Sbjct: 312 ----RLLKDVQHLQSSLQELEEASANQIAD 337
>gi|13899229 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, zeta isoform a [Homo sapiens]
Length = 718
Score = 32.0 bits (71), Expect = 0.28
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 5 PSAEAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSRAARAPDG 64
P A APG + + L P G G ++ S + + SR +RA R P
Sbjct: 40 PPAAAPGACDASCSVLGPSAPGSPGSDSSDFSSASSVSSCGAVESRSRGG-ARAERQPVE 98
Query: 65 PRHAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLYESIQDYKHLCQDLSFCQDLSSS 124
P G GP G R ++ L +R +++ D+K ++ ++L ++
Sbjct: 99 PHMGVGRQQRGPFQGVRVKNSVKELLLHIRSHKQKASGQAVDDFKTQGVNIEQFRELKNT 158
Query: 125 L-HSDSSYPPDAGLSD 139
+ +S PD+ LSD
Sbjct: 159 VSYSGKRKGPDS-LSD 173
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 31.6 bits (70), Expect = 0.37
Identities = 28/125 (22%), Positives = 39/125 (31%), Gaps = 27/125 (21%)
Query: 30 LLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSA 89
LL G R++E++ + + APDG H G+ +G AA RP +A
Sbjct: 232 LLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
Query: 90 LAALRKEMLWGLYESIQDYKHLCQDLSFCQDLSSSLHSDSSYPPDAGLSDDEEPPDASLP 149
+ DL P A PP A+
Sbjct: 292 AS---------------------------PDLPQPAERSRGEPRPAEPRAPPRPPPAARR 324
Query: 150 PDPPP 154
P PPP
Sbjct: 325 PPPPP 329
>gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.49
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 46 SQRSRIHDELSRAARAPDGPRHAAGAANAGPAAG---PRRPVNLDSALA 91
S R +L RA ++P PR A G+ PA PR+P N + A A
Sbjct: 115 STRESQETDLRRARQSPRNPRRARGSPGNRPAQSTREPRKPTNAEHARA 163
>gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.49
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 46 SQRSRIHDELSRAARAPDGPRHAAGAANAGPAAG---PRRPVNLDSALA 91
S R +L RA ++P PR A G+ PA PR+P N + A A
Sbjct: 115 STRESQETDLRRARQSPRNPRRARGSPGNRPAQSTREPRKPTNAEHARA 163
>gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.49
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 46 SQRSRIHDELSRAARAPDGPRHAAGAANAGPAAG---PRRPVNLDSALA 91
S R +L RA ++P PR A G+ PA PR+P N + A A
Sbjct: 115 STRESQETDLRRARQSPRNPRRARGSPGNRPAQSTREPRKPTNAEHARA 163
>gi|239755705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 306
Score = 30.8 bits (68), Expect = 0.63
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 129 SSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHIS 175
SS PP AG + PP +S PP PP R WLQD ++
Sbjct: 74 SSQPPSAGPT----PPPSSRPPPSPP------RRRRPAWLQDEAEVA 110
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 30.8 bits (68), Expect = 0.63
Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 14/100 (14%)
Query: 8 EAPGGAGCALAGLPPLPRGLSGLLNASGGSWRELERVYSQRSRIHDELSR-----AARAP 62
EAPGG G AG P GL A + R+ EL R AA A
Sbjct: 1330 EAPGGQGRPEAGRPASEARAPGLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAF 1389
Query: 63 DGP---------RHAAGAANAGPAAGPRRPVNLDSALAAL 93
GP A AGP GPR P + AA+
Sbjct: 1390 AGPGGGGSGALEAEGRAGARAGPRPGPRPPGGAPARKAAV 1429
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 30.8 bits (68), Expect = 0.63
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 13 AGCALAGLPPLP---RGLSGLLNASGGS----WRELERVYSQRSRIH-DELSRAARAPDG 64
AGC G PL R + L+ GS W+ Y +++++ D+ A R P
Sbjct: 2394 AGCPDLGKEPLVFQNRQFAHLMEEPLGSDPFSWKLPSLDYERKTKVDFDDFLPAIRKPQT 2453
Query: 65 PRHAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLYESIQDYKHLCQDLSFCQDLSSS 124
P AG+A G R ++ ++ A + L G+ ++ +D + D SSS
Sbjct: 2454 PTSLAGSAKGGQDGSQRSSIHFETEEA--NRSFLSGIKTILKKSPEPKEDPAHLSDSSSS 2511
Query: 125 LHSDSSY 131
S S+
Sbjct: 2512 SGSIVSF 2518
>gi|239755585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 30.4 bits (67), Expect = 0.83
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 30 LLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSA 89
LL G R++E++ + + APDG H G+ +G AA RP +A
Sbjct: 232 LLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 30.4 bits (67), Expect = 0.83
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 30 LLNASGGSWRELERVYSQRSRIHDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSA 89
LL G R++E++ + + APDG H G+ +G AA RP +A
Sbjct: 232 LLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAA 291
>gi|224922839 hypothetical protein LOC138311 [Homo sapiens]
Length = 431
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 85 NLDSALAALRKEMLWGLYE--------SIQDYKHLCQDLSFCQDLSSSLHSDSSYPPDAG 136
N D+ ++ + +W L + S+Q+ +H + L +C DL + P A
Sbjct: 184 NKDNRVSLAEAKSVWALLQRNEFLLLLSLQEKEHASRLLGYCGDL----YLTEGVPHGAW 239
Query: 137 LSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAF 172
+ A+LPP PL P A QWL A+
Sbjct: 240 HA-------AALPPLLRPLLPPALQGALQQWLGPAW 268
>gi|239750217 PREDICTED: hypothetical protein [Homo sapiens]
Length = 363
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 129 SSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHIS 175
SS PP AG + PP +S PP PP R WLQD ++
Sbjct: 74 SSPPPSAGPT----PPPSSRPPPSPP------RRRRPAWLQDEAEVA 110
>gi|239744524 PREDICTED: hypothetical protein XP_002343168 [Homo
sapiens]
Length = 363
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
Query: 129 SSYPPDAGLSDDEEPPDASLPPDPPPLTVPQTHNARDQWLQDAFHIS 175
SS PP AG + PP +S PP PP R WLQD ++
Sbjct: 74 SSPPPSAGPT----PPPSSRPPPSPP------RRRRPAWLQDEAEVA 110
>gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]
Length = 802
Score = 30.0 bits (66), Expect = 1.1
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 5 PSAEAPGGAGCALAGLPPLPRGLS--------GLLNASGGSWRELERVYSQR-----SRI 51
PS +PG C L L L LS GLL ++ YS++ R+
Sbjct: 576 PSPSSPGNGDCTLLALAQLRGPLSVDVPLVPEGLLTPEASPVKQSFFHYSEKEQNEIDRL 635
Query: 52 HDELSRAARAPDGPRHAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLYESIQDYKHL 111
++S+ A+ D P A G P++ + +L+ +L S+
Sbjct: 636 IQQISQLAQGMDRPFSAEAGTGGLEPLGGLEPLDSNLSLSGAGPPVL-----SLDLKPWK 690
Query: 112 CQDLSFCQD 120
CQ+L F D
Sbjct: 691 CQELDFLAD 699
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 30.0 bits (66), Expect = 1.1
Identities = 49/183 (26%), Positives = 63/183 (34%), Gaps = 43/183 (23%)
Query: 5 PSAEAPG---GAGCALAGLPPLPRG----LSGLLNASGG------SWRELERVYSQRSRI 51
P APG G G L + +G + LLN G SWRE + Y +
Sbjct: 997 PGGPAPGPNTGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPSKSWREPKPEYGDFQPV 1056
Query: 52 HDELSRAARAPDGPRHAAGAANA--GPAAGPRRPVNLDSALAALRKEMLW--GLYESIQD 107
+ P P A G N GP G +P S+ R+EM L E +
Sbjct: 1057 SSD-------PKSPWPACGPRNGLVGPLQGCGKPPGKPSSEPGRREEMPSEDSLAEPVPT 1109
Query: 108 YKHLCQDLSFCQDLSSSLHSDSSY--PPDAGLSDDE------------EPPDASLPPDPP 153
+ C L+ +L S PPD G S +PP P PP
Sbjct: 1110 -----SHFTACGSLTRTLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLDPPPGVPPARPP 1164
Query: 154 PLT 156
PLT
Sbjct: 1165 PLT 1167
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 143 PPDASLPPDPPPLTVPQTHNA-RDQWLQDAFH 173
PP LPP PPP+ PQT +++W +D+F+
Sbjct: 1550 PPPPPLPP-PPPVIKPQTSAVEQERWDEDSFY 1580
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 130 SYPPDAGLSDDEEPPDASLPPDPPPLTVP 158
S P GL+ D+EP LPP PPL P
Sbjct: 61 SEPRARGLAGDKEPRAGPLPPPAPPLPPP 89
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 29.6 bits (65), Expect = 1.4
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 10 PGGAGCALAGLPPLPRGLSGLLNAS---GGSWRELERVYSQRSRIHDELSRAARAPDGPR 66
PG A A P + L+ L G+ R+ R SQR R D P+G R
Sbjct: 9 PGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQR--DPEPEPEPEPEGGR 66
Query: 67 HAAGAANAGPAAGPRRPVNLDSALAALRKEMLWGLY 102
AGA N + GPR LA E G Y
Sbjct: 67 SRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSY 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,550,146
Number of Sequences: 37866
Number of extensions: 499217
Number of successful extensions: 3893
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3651
Number of HSP's gapped (non-prelim): 326
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.