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Search of human proteins with 227495694
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|227495694 calcitonin gene-related peptide-receptor component
protein isoform d [Homo sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|227495694 calcitonin gene-related peptide-receptor component ... 283 3e-77
gi|100913026 calcitonin gene-related peptide-receptor component ... 223 4e-59
gi|7656977 calcitonin gene-related peptide-receptor component pr... 206 5e-54
gi|100913028 calcitonin gene-related peptide-receptor component ... 133 6e-32
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.13
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.13
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.13
gi|33946313 ninein isoform 4 [Homo sapiens] 32 0.13
gi|33946321 ninein isoform 5 [Homo sapiens] 32 0.13
gi|148536871 ninein isoform 1 [Homo sapiens] 32 0.13
gi|148536869 ninein isoform 2 [Homo sapiens] 32 0.13
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 32 0.17
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 32 0.23
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 32 0.23
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 32 0.23
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 32 0.23
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 32 0.23
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 32 0.23
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 31 0.30
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 31 0.30
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.30
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.30
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.30
gi|8922273 mediator complex subunit 9 [Homo sapiens] 31 0.30
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 31 0.39
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 31 0.39
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 31 0.39
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 30 0.50
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 30 0.50
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 30 0.50
>gi|227495694 calcitonin gene-related peptide-receptor component
protein isoform d [Homo sapiens]
Length = 141
Score = 283 bits (724), Expect = 3e-77
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MQRGDPGEHLGARSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVR 60
MQRGDPGEHLGARSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVR
Sbjct: 1 MQRGDPGEHLGARSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVR 60
Query: 61 EFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAE 120
EFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAE
Sbjct: 61 EFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAE 120
Query: 121 PEAEQKKNTNSNVAMDEEDPA 141
PEAEQKKNTNSNVAMDEEDPA
Sbjct: 121 PEAEQKKNTNSNVAMDEEDPA 141
>gi|100913026 calcitonin gene-related peptide-receptor component
protein isoform b [Homo sapiens]
Length = 115
Score = 223 bits (568), Expect = 4e-59
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 28 EVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTA 87
EVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTA
Sbjct: 2 EVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTA 61
Query: 88 VEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 141
VEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 62 VEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 115
>gi|7656977 calcitonin gene-related peptide-receptor component
protein isoform a [Homo sapiens]
Length = 148
Score = 206 bits (524), Expect = 5e-54
Identities = 114/147 (77%), Positives = 114/147 (77%), Gaps = 33/147 (22%)
Query: 28 EVKDANSALLSNYE---------------------------------TLKYISKTPCRHQ 54
EVKDANSALLSNYE TLKYISKTPCRHQ
Sbjct: 2 EVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQ 61
Query: 55 SPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVT 114
SPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVT
Sbjct: 62 SPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVT 121
Query: 115 SILPAEPEAEQKKNTNSNVAMDEEDPA 141
SILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 122 SILPAEPEAEQKKNTNSNVAMDEEDPA 148
>gi|100913028 calcitonin gene-related peptide-receptor component
protein isoform c [Homo sapiens]
Length = 71
Score = 133 bits (334), Expect = 6e-32
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 74 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 133
AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV
Sbjct: 4 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 63
Query: 134 AMDEEDPA 141
AMDEEDPA
Sbjct: 64 AMDEEDPA 71
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.13
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 52 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 107
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 108 ALLHTVTSILPAEP 121
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.13
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 52 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 107
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 108 ALLHTVTSILPAEP 121
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 32.3 bits (72), Expect = 0.13
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 52 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 107
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 108 ALLHTVTSILPAEP 121
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 32.3 bits (72), Expect = 0.13
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 25 DSCEVKDANSALLSN-YETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHR 83
+SC K A S+LL + T+K K+ HQS +LKS + EK+Q L
Sbjct: 1730 NSCVDKLAKSSLLEHRIATMKQEQKS-WEHQS--------ASLKSQLVASQEKVQNLEDT 1780
Query: 84 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSI 116
V V +Q+ +S+ R+T+++ EAL V S+
Sbjct: 1781 -VQNVNLQMSRMKSDLRVTQQEKEALKQEVMSL 1812
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 32.3 bits (72), Expect = 0.13
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 25 DSCEVKDANSALLSN-YETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHR 83
+SC K A S+LL + T+K K+ HQS +LKS + EK+Q L
Sbjct: 1724 NSCVDKLAKSSLLEHRIATMKQEQKS-WEHQS--------ASLKSQLVASQEKVQNLEDT 1774
Query: 84 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSI 116
V V +Q+ +S+ R+T+++ EAL V S+
Sbjct: 1775 -VQNVNLQMSRMKSDLRVTQQEKEALKQEVMSL 1806
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 32.3 bits (72), Expect = 0.13
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 25 DSCEVKDANSALLSN-YETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHR 83
+SC K A S+LL + T+K K+ HQS +LKS + EK+Q L
Sbjct: 1724 NSCVDKLAKSSLLEHRIATMKQEQKS-WEHQS--------ASLKSQLVASQEKVQNLEDT 1774
Query: 84 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSI 116
V V +Q+ +S+ R+T+++ EAL V S+
Sbjct: 1775 -VQNVNLQMSRMKSDLRVTQQEKEALKQEVMSL 1806
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 32.3 bits (72), Expect = 0.13
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 25 DSCEVKDANSALLSN-YETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHR 83
+SC K A S+LL + T+K K+ HQS +LKS + EK+Q L
Sbjct: 1724 NSCVDKLAKSSLLEHRIATMKQEQKS-WEHQS--------ASLKSQLVASQEKVQNLEDT 1774
Query: 84 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSI 116
V V +Q+ +S+ R+T+++ EAL V S+
Sbjct: 1775 -VQNVNLQMSRMKSDLRVTQQEKEALKQEVMSL 1806
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 32.0 bits (71), Expect = 0.17
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 67 KSHKLTKAEKL--QLLNHRPVTAVEIQLMVEESEERLTEEQIEAL--LHTVTSILPAEPE 122
K+ + +KL ++LN +P T E + VE+ E +T+ Q+EA+ LH T+++
Sbjct: 366 KTERSNSEDKLNSKILNEKPTTD-EPEKAVEDINEHITDAQLEAMTELHDRTAVIKENER 424
Query: 123 AEQKKNTNSNVAMDEE 138
++ K N D+E
Sbjct: 425 EKRPKLENLPDTEDQE 440
>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
sapiens]
Length = 1977
Score = 31.6 bits (70), Expect = 0.23
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 13 RSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH--- 69
RS L +V ++ E+K+ + S+ ++ I +TPC Q E+ E + ++ H
Sbjct: 639 RSEALSSVLDQEEAMEIKEHHPEEGSSGSEVEEIPETPCESQGEELKEENMESVPLHLSL 698
Query: 70 KLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNT 129
T+++ L L P + VE S + Q A+L E E
Sbjct: 699 TETQSQGLCLQKEMPKKECSEAMEVETSVISIDSPQKLAILDQELEHKEQEAWEEATSED 758
Query: 130 NSNVAMDEEDPA 141
+S V +D ++P+
Sbjct: 759 SSVVIVDVKEPS 770
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 31.6 bits (70), Expect = 0.23
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 13 RSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH--- 69
RS L +V ++ E+K+ + S+ ++ I +TPC Q E+ E + ++ H
Sbjct: 639 RSEALSSVLDQEEAMEIKEHHPEEGSSGSEVEEIPETPCESQGEELKEENMESVPLHLSL 698
Query: 70 KLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNT 129
T+++ L L P + VE S + Q A+L E E
Sbjct: 699 TETQSQGLCLQKEMPKKECSEAMEVETSVISIDSPQKLAILDQELEHKEQEAWEEATSED 758
Query: 130 NSNVAMDEEDPA 141
+S V +D ++P+
Sbjct: 759 SSVVIVDVKEPS 770
>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
sapiens]
Length = 1972
Score = 31.6 bits (70), Expect = 0.23
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 13 RSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH--- 69
RS L +V ++ E+K+ + S+ ++ I +TPC Q E+ E + ++ H
Sbjct: 634 RSEALSSVLDQEEAMEIKEHHPEEGSSGSEVEEIPETPCESQGEELKEENMESVPLHLSL 693
Query: 70 KLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNT 129
T+++ L L P + VE S + Q A+L E E
Sbjct: 694 TETQSQGLCLQKEMPKKECSEAMEVETSVISIDSPQKLAILDQELEHKEQEAWEEATSED 753
Query: 130 NSNVAMDEEDPA 141
+S V +D ++P+
Sbjct: 754 SSVVIVDVKEPS 765
>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
sapiens]
Length = 906
Score = 31.6 bits (70), Expect = 0.23
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 63 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 122
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 123 AEQKKNTNS 131
AE+ + S
Sbjct: 184 AERPEQLES 192
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 31.6 bits (70), Expect = 0.23
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 59 VRE--FLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEER----LTEEQIEALLHT 112
VRE FLT L S K+ QL N + +T + + MV+ +EE +T EQI L+++
Sbjct: 847 VRESHFLTKLHSLKMLSITPSQLENGKKITTYDYRFMVKLAEETDGIIVTNEQIHILMNS 906
Query: 113 VTSIL 117
++
Sbjct: 907 SKKLM 911
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 31.6 bits (70), Expect = 0.23
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 61 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLH 111
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA H
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASH 483
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 31.2 bits (69), Expect = 0.30
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 66 LKSHKL---TKAEKLQLLNHRPVT-AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEP 121
LKS KL T ++ Q L + V + E+Q + E ++ +EQ+ L T+ +
Sbjct: 731 LKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKD--AKEQVSPLETTLEKFQQEKE 788
Query: 122 EAEQKKNTNSNVAMDE 137
E KKNT++ +A D+
Sbjct: 789 ELINKKNTSNKIAQDK 804
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 31.2 bits (69), Expect = 0.30
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 66 LKSHKL---TKAEKLQLLNHRPVT-AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEP 121
LKS KL T ++ Q L + V + E+Q + E ++ +EQ+ L T+ +
Sbjct: 870 LKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKD--AKEQVSPLETTLEKFQQEKE 927
Query: 122 EAEQKKNTNSNVAMDE 137
E KKNT++ +A D+
Sbjct: 928 ELINKKNTSNKIAQDK 943
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 31.2 bits (69), Expect = 0.30
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 63 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 122
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 123 AEQKKNTNS 131
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 31.2 bits (69), Expect = 0.30
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 63 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 122
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 123 AEQKKNTNS 131
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 31.2 bits (69), Expect = 0.30
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 63 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 122
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 123 AEQKKNTNS 131
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|8922273 mediator complex subunit 9 [Homo sapiens]
Length = 146
Score = 31.2 bits (69), Expect = 0.30
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 25 DSCEVKDANSALLSNYETL-KYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQ 78
DS EV +AL S ++ + K IS P H SPE ++ L +L+ TK E LQ
Sbjct: 79 DSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQ 133
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 30.8 bits (68), Expect = 0.39
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 54 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM------VEESEERLTEEQIE 107
QSP+ +++ + + + + +K Q L + +L EE+EE LTE+Q E
Sbjct: 504 QSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ-E 562
Query: 108 ALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 139
LL +P E E + DEED
Sbjct: 563 VLLGEGALTMPREGSTESESTQEDLEEEDEED 594
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 30.8 bits (68), Expect = 0.39
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 54 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM------VEESEERLTEEQIE 107
QSP+ +++ + + + + +K Q L + +L EE+EE LTE+Q E
Sbjct: 503 QSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ-E 561
Query: 108 ALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 139
LL +P E E + DEED
Sbjct: 562 VLLGEGALTMPREGSTESESTQEDLEEEDEED 593
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 0.39
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 56 PEIVREFLTALKSHKLTKAEKLQLLNHRPVTAV---------EIQLMVEESEERLTEEQI 106
PE ++ T K +L + K +H+P + EI+L E E R T E
Sbjct: 289 PEEMQRKATEEKGTELPERTKPDFPDHKPRKSTDENVPEPLEEIKLEFPEEESRKTNE-- 346
Query: 107 EALLHTVTSILPAEPEAEQKKNTNSNVAMDEE 138
E +L + P PE +K N N EE
Sbjct: 347 ETILEQSEMMKPESPEEIRKSNEKKNPQPPEE 378
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.50
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 61 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 109
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQ 487
Query: 110 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 140
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.50
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 61 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 109
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQ 487
Query: 110 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 140
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.50
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 61 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 109
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQQNQQ 487
Query: 110 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 140
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,654,539
Number of Sequences: 37866
Number of extensions: 225219
Number of successful extensions: 841
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 97
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.