Guide to the Human Genome
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Name: MED9 Sequence: fasta or formatted (146aa) NCBI GI: 8922273
Description:

mediator complex subunit 9

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         10           2
 C cysteine            1.4          2           1
 D aspartate           4.1          6           1
 E glutamate           7.5         11           3
 F phenylalanine       2.1          3           1
 G glycine             2.1          3           1
 H histidine           2.1          3           1
 I isoleucine          3.4          5           2
 K lysine              6.8         10           1
 L leucine             9.6         14           2
 M methionine          3.4          5           1
 N asparagine          2.7          4           1
 P proline            15.8         23           3
 Q glutamine          11.6         17           5
 R arginine            4.8          7           1
 S serine              7.5         11           1
 T threonine           2.7          4           1
 V valine              4.1          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mediator complex subunit 9 
MYST3                 0.080   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.080   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.080   MYST histone acetyltransferase (monocytic leukemia)...
HTT                   0.080   huntingtin 
PHLDA1                0.076   pleckstrin homology-like domain, family A, member 1 ...
RAPH1                 0.076   Ras association and pleckstrin homology domains 1 is...
FMNL2                 0.073   formin-like 2 
BRD4                  0.073   bromodomain-containing protein 4 isoform long 
LOC645529             0.073   PREDICTED: similar to Putative acrosin-like proteas...
PRR12                 0.073   proline rich 12 
ENAH                  0.069   enabled homolog isoform a 
ENAH                  0.069   enabled homolog isoform b 
BRD4                  0.069   bromodomain-containing protein 4 isoform short 
ZNF219                0.069   zinc finger protein 219 
ZNF219                0.069   zinc finger protein 219 
ZNF219                0.069   zinc finger protein 219 
FMN1                  0.065   formin 1 
SLC16A2               0.062   solute carrier family 16, member 2 
ZNF827                0.062   zinc finger protein 827 
SPEN                  0.062   spen homolog, transcriptional regulator 
EP400                 0.062   E1A binding protein p400 
ZNF358                0.062   zinc finger protein 358 
PPP1R13L              0.062   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.062   protein phosphatase 1, regulatory subunit 13 like [H...
HCN2                  0.062   hyperpolarization activated cyclic nucleotide-gated...
SEC24B                0.062   SEC24 (S. cerevisiae) homolog B isoform b 
SEC24B                0.062   SEC24 (S. cerevisiae) homolog B isoform a 
ACR                   0.062   acrosin precursor 
TMEM131               0.062   RW1 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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