Guide to the Human Genome
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Name: C1orf172 Sequence: fasta or formatted (398aa) NCBI GI: 22748787
Description:

hypothetical protein LOC126695

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         30           3
 C cysteine            3.8         15           2
 D aspartate           6.5         26           1
 E glutamate           6.5         26           2
 F phenylalanine       2.5         10           1
 G glycine             6.5         26           1
 H histidine           2.5         10           2
 I isoleucine          3.5         14           2
 K lysine              3.5         14           2
 L leucine             6.8         27           2
 M methionine          1.5          6           1
 N asparagine          0.5          2           1
 P proline            11.6         46           3
 Q glutamine           3.3         13           2
 R arginine            8.0         32           2
 S serine             11.8         47           2
 T threonine           6.5         26           2
 V valine              3.0         12           1
 W tryptophan          1.5          6           1
 Y tyrosine            2.5         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC126695 
PCLO                  0.016   piccolo isoform 2 
PCLO                  0.016   piccolo isoform 1 
SYNPO                 0.012   synaptopodin isoform A 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
LOC100292723          0.012   PREDICTED: hypothetical protein 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
SMTN                  0.012   smoothelin isoform b 
SMTN                  0.012   smoothelin isoform c 
HOXA3                 0.012   homeobox A3 isoform a 
HOXA3                 0.012   homeobox A3 isoform a 
LOC100129463          0.012   PREDICTED: hypothetical protein 
LONRF3                0.012   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.012   LON peptidase N-terminal domain and ring finger 3 is...
ASAP1                 0.011   development and differentiation enhancing factor 1 [...
MYC                   0.011   myc proto-oncogene protein 
RBM33                 0.011   RNA binding motif protein 33 
HES5                  0.011   hairy and enhancer of split 5 
BRPF1                 0.011   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.011   bromodomain and PHD finger-containing protein 1 isof...
KIAA1755              0.010   hypothetical protein LOC85449 
RANBP2                0.010   RAN binding protein 2 
SIK2                  0.010   SNF1-like kinase 2 
BAHCC1                0.010   BAH domain and coiled-coil containing 1 
FMNL1                 0.010   formin-like 1 
SMTN                  0.010   smoothelin isoform a 
CPSF6                 0.010   cleavage and polyadenylation specific factor 6, 68 ...
ACR                   0.010   acrosin precursor 
MUC7                  0.009   mucin 7, secreted precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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