Guide to the Human Genome
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Search of human proteins with 22748627

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22748627 hypothetical protein LOC91574 [Homo sapiens]
         (166 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|219879802 hypothetical protein LOC91574 [Homo sapiens]             340   3e-94
gi|22748627 hypothetical protein LOC91574 [Homo sapiens]              340   3e-94
gi|34577120 mitochondrial translational release factor 1 [Homo s...    56   2e-08
gi|166795303 mitochondrial translational release factor 1-like i...    47   6e-06
gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapi...    35   0.023
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    34   0.066
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]            33   0.11 
gi|11067749 bromodomain containing protein 3 [Homo sapiens]            33   0.11 
gi|42718020 retinitis pigmentosa 9 [Homo sapiens]                      33   0.11 
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            33   0.15 
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi...    32   0.19 
gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens]        32   0.19 
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ...    32   0.25 
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          32   0.33 
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              32   0.33 
gi|56676397 ankyrin repeat domain 11 [Homo sapiens]                    31   0.43 
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso...    31   0.43 
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso...    31   0.43 
gi|19557702 surfeit 6 [Homo sapiens]                                   31   0.43 
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [...    31   0.56 
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H...    31   0.56 
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s...    31   0.56 
gi|4505257 moesin [Homo sapiens]                                       31   0.56 
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa...    31   0.56 
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa...    31   0.56 
gi|40254924 leucine rich repeat containing 59 [Homo sapiens]           31   0.56 
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ...    31   0.56 
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]                     31   0.56 
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]                     30   0.73 
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]                     30   0.73 

>gi|219879802 hypothetical protein LOC91574 [Homo sapiens]
          Length = 166

 Score =  340 bits (872), Expect = 3e-94
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60
           MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
Sbjct: 1   MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60

Query: 61  EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
           EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
Sbjct: 61  EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120

Query: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
           NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
Sbjct: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166


>gi|22748627 hypothetical protein LOC91574 [Homo sapiens]
          Length = 166

 Score =  340 bits (872), Expect = 3e-94
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60
           MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
Sbjct: 1   MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL 60

Query: 61  EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
           EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
Sbjct: 61  EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120

Query: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
           NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
Sbjct: 121 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166


>gi|34577120 mitochondrial translational release factor 1 [Homo
           sapiens]
          Length = 445

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 8/99 (8%)

Query: 53  LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
           + LD  +L     +  G GGQ  NKT + V L HIP+G+VV+C Q RS  +N+++A ++L
Sbjct: 293 VKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVL 352

Query: 113 QEKVDVFYNGENSPVHKEKR--EAAKKKQERKKRAKETL 149
           + ++          + K+KR  ++A+K Q   +   E +
Sbjct: 353 RARL------YQQIIEKDKRQQQSARKLQVGTRAQSERI 385


>gi|166795303 mitochondrial translational release factor 1-like
           isoform a [Homo sapiens]
          Length = 380

 Score = 47.4 bits (111), Expect = 6e-06
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 53  LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112
           L ++  +L     +  G GGQ  N T + V + H+P+G+V +C Q RS  +N++LA   L
Sbjct: 232 LVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKL 291

Query: 113 QEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETL 149
           + K+   +  E       KR+ A+K Q   K   E +
Sbjct: 292 RAKLYSMHLEEEI----NKRQNARKIQIGSKGRSEKI 324


>gi|13514831 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo
           sapiens]
          Length = 875

 Score = 35.4 bits (80), Expect = 0.023
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 56  DENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEK 115
           DE E+EE+  K  G    +   TS    +K +P+       Q    D+  + A  +  ++
Sbjct: 588 DEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPT-------QFLDRDEEEEDADFLKVKR 640

Query: 116 VDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
            +VF  G +    K  ++    K   KK+  +  E KK++K  ++ +KK+
Sbjct: 641 HNVF--GLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNFKVNKKI 688


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 33.9 bits (76), Expect = 0.066
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 107 LARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH 166
           L  K+ +EK  V    +     K+K+E  KKK++ K++ ++  EK+K  +E  E  K+ H
Sbjct: 685 LPEKLFEEKEKV----KEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKH 740


>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 15/39 (38%), Positives = 26/39 (66%)

Query: 126 PVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           P  +EK+E  K+K+++KK+ K+  +KKK  K+  +  KK
Sbjct: 100 PQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKK 138



 Score = 31.6 bits (70), Expect = 0.33
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           E     KEK++  KKK+++KK+ K+  +KKK  K+     K+
Sbjct: 104 EKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKR 145



 Score = 31.2 bits (69), Expect = 0.43
 Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 86  HIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRA 145
           H+P   + +  + +  ++ +K  +K  ++K       +     K+K++  K+K++RK++ 
Sbjct: 93  HLPLHGLPQREEKKEKEKEKKKKKKKKKKKKK---KKKKKKKKKKKKKKKKRKRKRKRKR 149

Query: 146 KETLEKKKLLKELWESSKKVH 166
           K   ++KK  K+      K+H
Sbjct: 150 KRKKKRKKKKKKTGNEGAKIH 170


>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
          Length = 726

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 125 SPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
           +PV+K K++  KK++E+KK+ KE  ++K  +K   E   KV
Sbjct: 483 APVNKPKKKKEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKV 523


>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
          Length = 221

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 64  FVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKV-DVFYNG 122
           F+KG+        K     V    P   +++ ++    D   +  +++L++   D   + 
Sbjct: 123 FIKGN-------QKLEQFRVAHEDPMYDIIRDNKRHEKDVRIQQLKQLLEDSTSDEDRSS 175

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
            +S   KEK +  KKK++ KKR KE  +KKK
Sbjct: 176 SSSSEGKEKHKKKKKKEKHKKRKKEKKKKKK 206



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 124 NSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSK 163
           +S    E +E  KKK++++K  K   EKKK  K   +SSK
Sbjct: 174 SSSSSSEGKEKHKKKKKKEKHKKRKKEKKKKKKRKHKSSK 213


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 99  RSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKEL 158
           R  ++ RK   +  Q K       E     + KR+  KKK+ERK+R +   +KKK  KE 
Sbjct: 71  RGKERERKRKEREKQRK-------ERREKERRKRKKEKKKRERKQRGRRERKKKKERKER 123

Query: 159 WESSKK 164
              +K+
Sbjct: 124 ERENKQ 129



 Score = 29.6 bits (65), Expect = 1.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 129 KEKREAAKKKQERKKRAKETLEKKK 153
           K ++E  K++++RKKR KE  EKK+
Sbjct: 148 KREKERGKRERKRKKRKKEEREKKR 172



 Score = 28.5 bits (62), Expect = 2.8
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 99  RSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAK----KKQERKKRAKETLEKKK 153
           R  ++  +  RK  +EK      G+     ++KRE  K    K++ER+K+ KE  EK++
Sbjct: 36  RKKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKER 94



 Score = 28.5 bits (62), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
           E    +K++RE  +KK+ +KKR KE   +K+
Sbjct: 122 ERERENKQRRERKRKKRRKKKRRKERKREKE 152



 Score = 28.5 bits (62), Expect = 2.8
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 102 DQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
           ++ RK  +K  +EK     N +     +E++E  ++K+ERKK  ++  E+KK
Sbjct: 157 ERKRKKRKKEEREKKRE-RNRKERKKERERKERRERKKERKKERRKKKERKK 207



 Score = 27.7 bits (60), Expect = 4.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 129 KEKREAAKKKQERKKRAKETLEKKKLLK 156
           KE+RE  K+K+ER+K  K    KK+  K
Sbjct: 38  KERREREKRKREREKERKRERGKKEKKK 65


>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 123

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           E     KEKR+  +K++E+KK+ KET ++K+  KE  E  +K
Sbjct: 24  EKEGKRKEKRKEKRKEKEKKKKTKETEKRKE--KEEEEKKRK 63



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 109 RKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           +K  ++K +     E     +E+ +  K+K++RK++ KE  EKKK  KE  +  +K
Sbjct: 1   KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEK-EKKKKTKETEKRKEK 55



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKK 153
           + ++  +K  +E+ +     E     +EK E  ++K+++K+R KE  E+KK
Sbjct: 63  KRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKK 113



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 105 RKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           RK  RK  +++ +     + +   KEK E  KK++ ++K+ KE  E+++  +E  E  ++
Sbjct: 29  RKEKRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEE 88



 Score = 27.7 bits (60), Expect = 4.7
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESS 162
           + +K  +K  +E  +     E      +++E  K+K++ K++ K+T E +K  KE  E  
Sbjct: 1   KKKKKKKKETEETEETEETEEEEEKEGKRKEKRKEKRKEKEKKKKTKETEK-RKEKEEEE 59

Query: 163 KK 164
           KK
Sbjct: 60  KK 61



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 102 DQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWES 161
           ++ +K  RK  ++K +     E     +EK E  K++  R+K+     +KK+  KE  E 
Sbjct: 57  EEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKK-----KKKRRRKEEEEE 111

Query: 162 SKK 164
            KK
Sbjct: 112 KKK 114


>gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens]
          Length = 495

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 109 RKILQEKVDVFYNGENSPVHKEK-REAAKKKQERKKRAKETLEKKKLLKEL 158
           R+ L++     Y  E + ++K K +E A+KK  ++K  K+  E++  LKEL
Sbjct: 313 REDLEQVRQELYQEEQAEIYKSKLKEEAEKKLRKQKEMKQDFEEQMALKEL 363


>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
           sapiens]
          Length = 482

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 9/42 (21%)

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           E   + KEK EAAKK+QE         E+++ LKE WE  ++
Sbjct: 84  EEFRIKKEKEEAAKKRQE---------EQERKLKEQWEEQQR 116


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 31.6 bits (70), Expect = 0.33
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 78  TSNCVVLKHIPSGIVVKCHQTRSVDQNRKLAR-KILQEKVDVFYNGENSPVHKEKREAAK 136
           T   V  K  PS +  +  + ++ D   K A+ K ++++  V    +     K K+E AK
Sbjct: 603 TEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAK 662

Query: 137 KKQERKKRAKETLEKKKLLKELWESSKK 164
           K+ +   + +E  +K+++ KE+ +  KK
Sbjct: 663 KEDKTPIKKEEKPKKEEVKKEVKKEIKK 690



 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           + +P  + K+E   KK+E+K+  KE  E KK +K+L + +KK
Sbjct: 702 KETPPKEVKKEV--KKEEKKEVKKEEKEPKKEIKKLPKDAKK 741



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 16/133 (12%)

Query: 46  KKDYPALL----SLDENEL----EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQ 97
           KKD P       S+ E E+    E   VK      QAT+        K +     VK   
Sbjct: 589 KKDKPIKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPED 648

Query: 98  TRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKK------KQERKKRAKETLEK 151
            +  ++  K  +++ +++       E  P  +E ++  KK      K+E KK  K+    
Sbjct: 649 KK--EEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPP 706

Query: 152 KKLLKELWESSKK 164
           K++ KE+ +  KK
Sbjct: 707 KEVKKEVKKEEKK 719


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 31.6 bits (70), Expect = 0.33
 Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 100 SVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELW 159
           S D+ +K  ++  ++K +  Y    S  H+ + E+ K+  ++KK++K+  EK+K ++ L 
Sbjct: 120 SEDEEKKQGKR-RKKKKNRSYKSSQSSTHESESES-KESVKKKKKSKDETEKEKDVRSLS 177

Query: 160 ESSKK 164
           +  KK
Sbjct: 178 KKRKK 182


>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
          Length = 2663

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 99  RSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKK----KQERKKRAKET---LEK 151
           R  D N+ ++R   +EK D     E     KEK    +K    K+ERKK++K+    LEK
Sbjct: 720 RIKDTNKDISRSFREEK-DRSNKAEKERSLKEKSPKEEKLRLYKEERKKKSKDRPSKLEK 778

Query: 152 KKLLKE 157
           K  LKE
Sbjct: 779 KNDLKE 784



 Score = 27.3 bits (59), Expect = 6.1
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 128  HKEKR--EAAKKKQERKKRAK-ETLEKKKLLKELWESSKKVH 166
            HKEK+  E+ +K ++RK RA  ++ + KK  ++L E ++K H
Sbjct: 1205 HKEKKDKESTEKYKDRKDRASVDSTQDKKNKQKLPEKAEKKH 1246


>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
           isoform 1 [Homo sapiens]
          Length = 483

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 131 KREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           +RE  K+++E ++R KE  EK+K  K   E  KK
Sbjct: 362 ERERLKRQEEERRRQKERYEKEKTFKRKEEEMKK 395


>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
           isoform 2 [Homo sapiens]
          Length = 470

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 131 KREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           +RE  K+++E ++R KE  EK+K  K   E  KK
Sbjct: 349 ERERLKRQEEERRRQKERYEKEKTFKRKEEEMKK 382


>gi|19557702 surfeit 6 [Homo sapiens]
          Length = 361

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 19/74 (25%), Positives = 38/74 (51%)

Query: 90  GIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETL 149
           G+  +     ++D  R+   + +QE        E SP   EKR   K++++RKKR ++ L
Sbjct: 103 GLATEPESVFALDVLRQRLHEKIQEARGQGSAKELSPAALEKRRRRKQERDRKKRKRKEL 162

Query: 150 EKKKLLKELWESSK 163
             K+  ++  E+++
Sbjct: 163 RAKEKARKAEEATE 176


>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
           [Homo sapiens]
          Length = 759

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKR-EAAKKKQERKKRAKETLEKKKLL 155
           + +K  +K  + K D     +N P  K+K+ +  KKK+E K + K+  EKK+++
Sbjct: 172 EEKKKKKKEKKSKSDDKNENKNDPEKKKKKKDKEKKKKEEKSKDKKEEEKKEVV 225


>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
           sapiens]
          Length = 690

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 103 QNRKLARKILQEKVDVFYNGENSPVHKEKR-EAAKKKQERKKRAKETLEKKKLL 155
           + +K  +K  + K D     +N P  K+K+ +  KKK+E K + K+  EKK+++
Sbjct: 103 EEKKKKKKEKKSKSDDKNENKNDPEKKKKKKDKEKKKKEEKSKDKKEEEKKEVV 156


>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
           sapiens]
          Length = 1029

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 97  QTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKREAAKKKQER-----KKRAKETLEK 151
           QT   + + + + K+ QE   +  +G+  P  +E ++  ++++E      KKR KE  +K
Sbjct: 2   QTNEGEVSEESSSKVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKKK 61

Query: 152 KKLLKELWESSKKV 165
           K+  +++ E   KV
Sbjct: 62  KEATQKVTEQKTKV 75


>gi|4505257 moesin [Homo sapiens]
          Length = 577

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 2/36 (5%)

Query: 129 KEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
           K+KRE A+K++E+ +R KE L ++  LK++ E +KK
Sbjct: 327 KKKREMAEKEKEKIEREKEELMER--LKQIEEQTKK 360


>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
            sapiens]
          Length = 1690

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 55   LDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQE 114
            ++++ +EE+ +K  G       +      ++ +      K  + + +D+ RK   K+  +
Sbjct: 1484 MEDDSMEEKPLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPRKKKLKLGAD 1543

Query: 115  KVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
            K        +  ++K  ++ AK+++ +KK+ K    K +L+KE  E  ++
Sbjct: 1544 K--------SKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKRE 1585


>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
            sapiens]
          Length = 1641

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 55   LDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQE 114
            ++++ +EE+ +K  G       +      ++ +      K  + + +D+ RK   K+  +
Sbjct: 1489 MEDDSMEEKPLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPRKKKLKLGAD 1548

Query: 115  KVDVFYNGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKK 164
            K        +  ++K  ++ AK+++ +KK+ K    K +L+KE  E  ++
Sbjct: 1549 K--------SKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKRE 1590


>gi|40254924 leucine rich repeat containing 59 [Homo sapiens]
          Length = 307

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 30/153 (19%)

Query: 18  PAPWG-LRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGPG----- 71
           PA +G L   + L LL+  +   PV  A  K+    L L +N L+    K  G       
Sbjct: 78  PADFGRLVNLQHLDLLNNKLVTLPVSFAQLKNLK-WLDLKDNPLDPVLAKVAGDCLDEKQ 136

Query: 72  -GQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKE 130
             Q  NK     VL+H+         +    DQ R+  R++  E+         +   +E
Sbjct: 137 CKQCANK-----VLQHM---------KAVQADQERERQRRLEVER--------EAEKKRE 174

Query: 131 KREAAKKKQERKKRAKETLEKKKLLKELWESSK 163
            ++ AK+ QER+ R +E  E+K+  ++ +++ K
Sbjct: 175 AKQRAKEAQERELRKREKAEEKERRRKEYDALK 207



 Score = 30.0 bits (66), Expect = 0.95
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 103 QNRKLARKILQEKVDVFYNGENSPVHK-EKREAAKKKQERKKRAKETLEKKKLLKELWES 161
           Q ++ A K+LQ    V  + E     + E    A+KK+E K+RAKE  E++   +E  E 
Sbjct: 136 QCKQCANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQRAKEAQERELRKREKAEE 195

Query: 162 SKK 164
            ++
Sbjct: 196 KER 198


>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
            sapiens]
          Length = 2542

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 11/82 (13%)

Query: 91   IVVKCHQ-----TRSVDQNRKLARK---ILQEKVDVFYNGENSPVHKEKREAAKKKQERK 142
            ++ KCHQ      ++ DQ    A K   IL +++D+  + E S   +++  AAK+++ ++
Sbjct: 1402 LLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREES---RKQALAAKREKRKE 1458

Query: 143  KRAKETLEKKKLLKELWESSKK 164
            KR K+  E+K+  +E  E+  K
Sbjct: 1459 KRKKKKEEQKRKQEEDEENKPK 1480



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 5/43 (11%)

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
           +  P++K+K E  KK +E     ++  +KKK+LKEL +  +++
Sbjct: 808 QGEPLNKDKIEELKKNRE-----EQVQKKKKILKELQKVERQL 845


>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
          Length = 2617

 Score = 30.8 bits (68), Expect = 0.56
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 11/82 (13%)

Query: 91   IVVKCHQ-----TRSVDQNRKLARK---ILQEKVDVFYNGENSPVHKEKREAAKKKQERK 142
            ++ KCHQ      ++ DQ    A K   IL +++D+  + E S   +++  AAK+++ ++
Sbjct: 1402 LLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREES---RKQALAAKREKRKE 1458

Query: 143  KRAKETLEKKKLLKELWESSKK 164
            KR K+  E+K+  +E  E+  K
Sbjct: 1459 KRKKKKEEQKRKQEEDEENKPK 1480



 Score = 28.1 bits (61), Expect = 3.6
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 5/43 (11%)

Query: 123 ENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKV 165
           +  P++K+K E  KK +E     ++  +KKK+LKEL +  +++
Sbjct: 808 QGEPLNKDKIEELKKNRE-----EQVQKKKKILKELQKVERQL 845


>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
          Length = 1263

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 122 GENSPVHKEKREAAKKKQERKKRAKE-TLEKKKLLKELWESSKKV 165
           GE   +H EK++ A +KQ+ +    + T E  KL KEL ++ K++
Sbjct: 509 GEKDALHSEKQQIATEKQDLEAEVSQLTGEVAKLTKELEDAKKEM 553



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 130  EKREAAKKKQERKKRAKETLEKKKLLKE 157
            +KR   ++K  R K AKE  EK++L K+
Sbjct: 1144 QKRRETEEKMRRAKLAKEKAEKERLEKQ 1171


>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
          Length = 1272

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 122 GENSPVHKEKREAAKKKQERKKRAKE-TLEKKKLLKELWESSKKV 165
           GE   +H EK++ A +KQ+ +    + T E  KL KEL ++ K++
Sbjct: 518 GEKDALHSEKQQIATEKQDLEAEVSQLTGEVAKLTKELEDAKKEM 562



 Score = 26.9 bits (58), Expect = 8.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 130  EKREAAKKKQERKKRAKETLEKKKLLKE 157
            +KR   ++K  R K AKE  EK++L K+
Sbjct: 1153 QKRRETEEKMRRAKLAKEKAEKERLEKQ 1180


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,113,497
Number of Sequences: 37866
Number of extensions: 342135
Number of successful extensions: 3366
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 2524
Number of HSP's gapped (non-prelim): 702
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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