Guide to the Human Genome
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Name: DDX10 Sequence: fasta or formatted (875aa) NCBI GI: 13514831
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 10

Referenced in:

DEAD / H Helicase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         57           2
 C cysteine            0.7          6           1
 D aspartate           7.2         63           8
 E glutamate           9.7         85           4
 F phenylalanine       3.4         30           2
 G glycine             4.1         36           2
 H histidine           1.8         16           1
 I isoleucine          4.0         35           2
 K lysine             11.5        101           3
 L leucine             9.9         87           2
 M methionine          2.1         18           1
 N asparagine          3.5         31           2
 P proline             3.8         33           1
 Q glutamine           5.7         50           3
 R arginine            6.4         56           2
 S serine              6.1         53           2
 T threonine           4.5         39           1
 V valine              5.9         52           1
 W tryptophan          0.9          8           1
 Y tyrosine            2.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
DDX18                 0.207   DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 
DDX55                 0.164   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
DDX31                 0.127   DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ...
DDX47                 0.121   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX27                 0.112   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX54                 0.103   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX49                 0.103   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX54                 0.103   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX47                 0.102   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX6                  0.094   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX41                 0.092   DEAD-box protein abstrakt 
DDX42                 0.091   DEAD box polypeptide 42 protein 
DDX42                 0.091   DEAD box polypeptide 42 protein 
DDX50                 0.089   nucleolar protein GU2 
DDX17                 0.089   DEAD box polypeptide 17 isoform 3 
DDX17                 0.089   DEAD box polypeptide 17 isoform 1 
DDX21                 0.089   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
DDX46                 0.087   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX4                  0.087   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.087   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.087   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX5                  0.087   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX23                 0.086   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX43                 0.085   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX3X                 0.083   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX31                 0.083   DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ...
DDX3Y                 0.082   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.082   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX59                 0.080   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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