Guide to the Human Genome
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Name: C12orf65 Sequence: fasta or formatted (166aa) NCBI GI: 219879802
Description:

hypothetical protein LOC91574

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [166aa] hypothetical protein LOC91574
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          9           2
 C cysteine            1.8          3           1
 D aspartate           2.4          4           1
 E glutamate           8.4         14           2
 F phenylalanine       2.4          4           1
 G glycine             6.0         10           2
 H histidine           3.6          6           1
 I isoleucine          3.0          5           1
 K lysine             14.5         24           3
 L leucine            10.8         18           2
 M methionine          1.2          2           1
 N asparagine          3.6          6           1
 P proline             6.0         10           1
 Q glutamine           4.2          7           1
 R arginine            4.8          8           1
 S serine              5.4          9           2
 T threonine           5.4          9           1
 V valine              7.8         13           2
 W tryptophan          1.8          3           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC91574 
C12orf65              1.000   hypothetical protein LOC91574 
MTRF1                 0.098   mitochondrial translational release factor 1 
MTRF1L                0.070   mitochondrial translational release factor 1-like i...
DDX10                 0.032   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
TAF3                  0.029   RNA polymerase II transcription factor TAFII140 [Ho...
LOC100294364          0.025   PREDICTED: hypothetical protein 
BRD3                  0.025   bromodomain containing protein 3 
RP9                   0.025   retinitis pigmentosa 9 
LOC100133599          0.025   PREDICTED: hypothetical protein 
LOC100294088          0.022   PREDICTED: hypothetical protein, partial 
MNS1                  0.022   meiosis-specific nuclear structural 1 
ZRSR2                 0.022   U2 small nuclear RNA auxiliary factor 1-like 2 
MAP1B                 0.022   microtubule-associated protein 1B 
FAM133A               0.022   hypothetical protein LOC286499 
ANKRD11               0.019   ankyrin repeat domain 11 
UPF3B                 0.019   UPF3 regulator of nonsense transcripts homolog B iso...
UPF3B                 0.019   UPF3 regulator of nonsense transcripts homolog B iso...
SURF6                 0.019   surfeit 6 
CNGA1                 0.019   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.019   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
TNRC6B                0.019   trinucleotide repeat containing 6B isoform 3 
MSN                   0.019   moesin 
KDM5A                 0.019   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.019   retinoblastoma binding protein 2 isoform 2 
LRRC59                0.019   leucine rich repeat containing 59 
ANKHD1                0.019   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.019   ANKHD1-EIF4EBP3 protein 
DIAPH1                0.016   diaphanous 1 isoform 2 
DIAPH1                0.016   diaphanous 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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