UPF3B 9839

Name: UPF3B	Sequence: fasta or formatted (483aa)		NCBI GI: 18375528
Description: UPF3 regulator of nonsense transcripts homolog B isoform 1		Referenced in: RNA-binding Proteins RNases and RNA Stability
Other entries for this name: alt prot [470aa] UPF3 regulator of nonsense transcripts homolog B isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.1 20 2 C cysteine 0.4 2 1 D aspartate 7.0 34 3 E glutamate 15.5 75 3 F phenylalanine 2.7 13 2 G glycine 4.1 20 3 H histidine 1.2 6 1 I isoleucine 3.5 17 2 K lysine 15.5 75 3 L leucine 6.8 33 2 M methionine 1.4 7 1 N asparagine 2.7 13 1 P proline 4.6 22 2 Q glutamine 3.7 18 1 R arginine 11.8 57 4 S serine 5.4 26 2 T threonine 4.6 22 2 V valine 2.1 10 2 W tryptophan 0.2 1 1 Y tyrosine 2.5 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 UPF3 regulator of nonsense transcripts homolog B iso... UPF3B 0.963 UPF3 regulator of nonsense transcripts homolog B iso... UPF3A 0.388 UPF3 regulator of nonsense transcripts homolog A iso... UPF3A 0.318 UPF3 regulator of nonsense transcripts homolog A iso... LOC100286959 0.082 PREDICTED: hypothetical protein XP_002343921 RBM25 0.079 RNA binding motif protein 25 TCHH 0.077 trichohyalin LOC100133599 0.077 PREDICTED: hypothetical protein LOC283685 0.075 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC440243 0.075 PREDICTED: Putative golgin subfamily A member 6-lik... INCENP 0.074 inner centromere protein antigens 135/155kDa isofor... LOC100131202 0.074 PREDICTED: hypothetical protein TAF3 0.074 RNA polymerase II transcription factor TAFII140 [Ho... INCENP 0.071 inner centromere protein antigens 135/155kDa isofor... LOC100133599 0.071 PREDICTED: hypothetical protein LOC283767 0.071 golgi autoantigen, golgin subfamily a-like LOC100131202 0.069 PREDICTED: hypothetical protein SFRS12 0.067 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.067 splicing factor, arginine/serine-rich 12 isoform b [... ZC3H13 0.067 zinc finger CCCH-type containing 13 LOC727832 0.064 golgi autoantigen, golgin subfamily a-like LOC645202 0.064 PREDICTED: hypothetical protein LOC645202 PPIG 0.064 peptidylprolyl isomerase G LOC283685 0.063 PREDICTED: golgi autoantigen, golgin subfamily a-li... WDR87 0.061 NYD-SP11 protein GIGYF2 0.061 GRB10 interacting GYF protein 2 isoform c GIGYF2 0.061 GRB10 interacting GYF protein 2 isoform a GIGYF2 0.061 GRB10 interacting GYF protein 2 isoform b GIGYF2 0.061 GRB10 interacting GYF protein 2 isoform b CALD1 0.060 caldesmon 1 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.