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Search of human proteins with 22748615
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748615 hypothetical protein LOC90488 [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748615 hypothetical protein LOC90488 [Homo sapiens] 232 5e-62
gi|4506181 proteasome subunit alpha type 2 [Homo sapiens] 30 0.41
gi|19923817 peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens] 29 0.91
gi|56788377 nucleoporin like 1 isoform b [Homo sapiens] 29 0.91
gi|30102928 nucleoporin like 1 isoform a [Homo sapiens] 29 0.91
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 29 0.91
gi|76880480 hypothetical protein LOC9865 [Homo sapiens] 29 0.91
gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens] 28 1.2
gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens] 28 1.2
gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens] 28 1.2
gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens] 28 1.2
gi|239752780 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239747286 PREDICTED: hypothetical protein XP_002346424 [Homo ... 28 1.6
gi|239741110 PREDICTED: hypothetical protein XP_002342097 [Homo ... 28 1.6
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 28 1.6
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 28 1.6
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 28 1.6
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 28 1.6
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 28 1.6
gi|56786157 activating transcription factor 6 [Homo sapiens] 28 2.0
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 27 2.7
gi|6912372 forkhead box D3 [Homo sapiens] 27 4.5
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 27 4.5
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 27 4.5
gi|40786420 immunoglobulin-like domain containing receptor 2 [Ho... 27 4.5
gi|29789373 hypothetical protein LOC92689 [Homo sapiens] 27 4.5
gi|83367077 mucin 16 [Homo sapiens] 26 5.9
gi|24497612 ubiquitin associated and SH3 domain containing, B [H... 26 5.9
gi|71773106 adaptor-related protein complex 2, beta 1 subunit is... 26 5.9
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 26 7.7
>gi|22748615 hypothetical protein LOC90488 [Homo sapiens]
Length = 116
Score = 232 bits (591), Expect = 5e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MNQTDKNQQEIPSYLNDEPPEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWI 60
MNQTDKNQQEIPSYLNDEPPEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWI
Sbjct: 1 MNQTDKNQQEIPSYLNDEPPEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWI 60
Query: 61 GGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVVNKVPLTGKKKDKSD 116
GGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVVNKVPLTGKKKDKSD
Sbjct: 61 GGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVVNKVPLTGKKKDKSD 116
>gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]
Length = 234
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 73 TTVPSMGIGLVKGGVSAVAGGVTAVGSAVVNKVPLTGKKKDKS 115
T PS + ++ ++AVAGG +VG N V L +KK KS
Sbjct: 12 TFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS 54
>gi|19923817 peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens]
Length = 303
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 81 GLVKGGVSAVAGGVTAVGSAVVNKV 105
GL++G V+ V GG T +G A+V ++
Sbjct: 14 GLLQGQVAIVTGGATGIGKAIVKEL 38
>gi|56788377 nucleoporin like 1 isoform b [Homo sapiens]
Length = 587
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 35 LSRVTGGIFSVTKGAVGATIGG-VAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGG 93
L+ + G + T + G ++GG +A +GG + T T + + +GL G +A
Sbjct: 140 LNNLGGTTATTTTASTGLSLGGALAGLGGSLFQSTNTGTSGLGQNALGLTLGTTAA---- 195
Query: 94 VTAVGSAVVNKVPLTGKKKDKSD 116
+ G+ + + + KSD
Sbjct: 196 TSTAGNEGLGGIDFSSSSDKKSD 218
>gi|30102928 nucleoporin like 1 isoform a [Homo sapiens]
Length = 599
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 35 LSRVTGGIFSVTKGAVGATIGG-VAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGG 93
L+ + G + T + G ++GG +A +GG + T T + + +GL G +A
Sbjct: 152 LNNLGGTTATTTTASTGLSLGGALAGLGGSLFQSTNTGTSGLGQNALGLTLGTTAA---- 207
Query: 94 VTAVGSAVVNKVPLTGKKKDKSD 116
+ G+ + + + KSD
Sbjct: 208 TSTAGNEGLGGIDFSSSSDKKSD 230
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 26 DHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKG 85
++ QQQP + + ++ G S G T+ VA G L V TAV P+ G +
Sbjct: 655 EYVQQQPILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQPTAVPAQPA-GASVQPV 713
Query: 86 GVSAVAGGVTAVGSAVVN 103
G + A GS + N
Sbjct: 714 GQAPAAVSAVPTGSQIAN 731
>gi|76880480 hypothetical protein LOC9865 [Homo sapiens]
Length = 811
Score = 28.9 bits (63), Expect = 0.91
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query: 5 DKNQQEIPSYLNDE--PPEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWIGG 62
D+ +Q +P+ +E PP G ++ P Q P + + G + GVAW G
Sbjct: 426 DRRRQPLPTAAGEEMTPPAGLAEELPPQ-PQLQQQ-------------GRFLAGVAWDGA 471
Query: 63 KSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVVNKVPLTGK 110
V + + G GL + S A A S ++K P G+
Sbjct: 472 ARELVGNRSALRLSRRGPGLQQPSPSVAAAAGPAPQSLDLHKKPQRGR 519
>gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 49 AVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
A G T GV ++G K+ E V TV V AV GVTAV V
Sbjct: 29 AAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTV 82
>gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 49 AVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
A G T GV ++G K+ E V TV V AV GVTAV V
Sbjct: 29 AAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTV 82
>gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens]
Length = 112
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 49 AVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
A G T GV ++G K+ E V TV V AV GVTAV V
Sbjct: 29 AAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTV 82
>gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 49 AVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
A G T GV ++G K+ E V TV V AV GVTAV V
Sbjct: 29 AAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTV 82
>gi|239752780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 48 GAVGATIGGVAWIGGKSLE---VTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
G V + V G+SL V TAV V G++ V+ VAG V VGS V+
Sbjct: 141 GVVARAVATVVSGRGRSLRTPVVLITAVVAVKGGAAGVLGVAVATVAGTVATVGSPVL 198
>gi|239747286 PREDICTED: hypothetical protein XP_002346424 [Homo
sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 48 GAVGATIGGVAWIGGKSLE---VTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
G V + V G+SL V TAV V G++ V+ VAG V VGS V+
Sbjct: 141 GVVARAVATVVSGRGRSLRTPVVLITAVVAVKGGAAGVLGVAVATVAGTVATVGSPVL 198
>gi|239741110 PREDICTED: hypothetical protein XP_002342097 [Homo
sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 48 GAVGATIGGVAWIGGKSLE---VTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
G V + V G+SL V TAV V G++ V+ VAG V VGS V+
Sbjct: 141 GVVARAVATVVSGRGRSLRTPVVLITAVVAVKGGAAGVLGVAVATVAGTVATVGSPVL 198
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 18 EPPEGSMKDHPQQQPGMLSRVTGG 41
+ P+G + PQQ GMLS TGG
Sbjct: 1163 DDPDGKQEAKPQQAAGMLSPKTGG 1186
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 18 EPPEGSMKDHPQQQPGMLSRVTGG 41
+ P+G + PQQ GMLS TGG
Sbjct: 1202 DDPDGKQEAKPQQAAGMLSPKTGG 1225
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 18 EPPEGSMKDHPQQQPGMLSRVTGG 41
+ P+G + PQQ GMLS TGG
Sbjct: 1239 DDPDGKQEAKPQQAAGMLSPKTGG 1262
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 18 EPPEGSMKDHPQQQPGMLSRVTGG 41
+ P+G + PQQ GMLS TGG
Sbjct: 1162 DDPDGKQEAKPQQAAGMLSPKTGG 1185
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
sapiens]
Length = 1450
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 18 EPPEGSMKDHPQQQPGMLSRVTGG 41
+ P+G + PQQ GMLS TGG
Sbjct: 1201 DDPDGKQEAKPQQAAGMLSPKTGG 1224
>gi|56786157 activating transcription factor 6 [Homo sapiens]
Length = 670
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 62 GKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVVNKVP 106
G+++ +++ V + + G+ V AVAGGVT + + VVN VP
Sbjct: 230 GQTVLLSQPTVVQLQAPGVLPSAQPVLAVAGGVTQLPNHVVNVVP 274
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 33 GMLSRVTGGIFSVTKGAVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAG 92
G ++ +TG + +V V AT+G V G ++ +AV S + + G V+A +G
Sbjct: 2695 GPVNVLTGPV-NVLTTPVNATVGTVNAAPG-TVNAAASAVNATAS-AVTVTAGAVTAASG 2751
Query: 93 GVTAVGSAV 101
GVTA V
Sbjct: 2752 GVTATTGTV 2760
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 52 ATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAV 101
A G A G + + K+ + PS I + GG A GG +AVG+ V
Sbjct: 352 AAAAGTAGAAGTTASLIKSEPSARPSFSIENIIGGGPAAPGG-SAVGAGV 400
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 19 PPEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWIGGKSLEVTKTAVTTVPS- 77
P GS Q P S V G+ T+ + G +G +SL VT++ PS
Sbjct: 711 PEGGSWTMLDLQSPSQQSTVLRGLPPGTQIQIKVQAQGQEGLGAESLSVTRSIPEEAPSG 770
Query: 78 --MGIGLVKGG 86
G+ + GG
Sbjct: 771 PPQGVAVALGG 781
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 9 QEIPSYLNDEPPEGSMKDHPQQQP 32
Q+I LN EPPEGS ++ + +P
Sbjct: 877 QKIHRALNTEPPEGSKEETAEAEP 900
>gi|40786420 immunoglobulin-like domain containing receptor 2 [Homo
sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 11 IPSY-LNDEPPEGSMKDHPQQQPGMLSRVTGGIFSVTKG 48
IPS L P G + D P P S TGG SV KG
Sbjct: 259 IPSVPLGGAPSSGMLMDKPHPPPLAPSDSTGGSHSVRKG 297
>gi|29789373 hypothetical protein LOC92689 [Homo sapiens]
Length = 563
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 4 TDKNQQEIPSYLNDEPPEGSMKDHPQQQP-GMLSRVTGGIFSVTKGAVGATIGGVAWIGG 62
T+ EI D+ P S P GMLS +T + + K + + + +IG
Sbjct: 177 TENGVPEITDAATDQGPAESPPTSPSSASRGMLSAITNVVQNTGKSVLTGGLDALEFIGK 236
Query: 63 KSLEV 67
K++ V
Sbjct: 237 KTMNV 241
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 29 QQQPGMLSRVTGGIFSVTKGAVGATIGGVAWIGGKSLEVTKTAVTTVPSM 78
Q P ++S+ TG FS+ G+ G T G S + + VT+ S+
Sbjct: 3330 QSSPELVSKTTGMEFSMWHGSTGGTTGDTHVSLSTSSNILEDPVTSPNSV 3379
>gi|24497612 ubiquitin associated and SH3 domain containing, B [Homo
sapiens]
Length = 649
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 29 QQQPGMLSRVTGGIFSVTKGAVGATIGGVAWIGGKSLEVTKTAVTT 74
QQ+ + RV G+F TK G+T+ AWI L +V T
Sbjct: 486 QQENHLKIRVEPGLFEWTKWVAGSTL--PAWIPPSELAAANLSVDT 529
>gi|71773106 adaptor-related protein complex 2, beta 1 subunit
isoform a [Homo sapiens]
Length = 951
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 17 DEPPEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWIGGKSLEVTKTAVTTVP 76
D P ++ Q G + + GG+ S+ +G IGG + G+S + T P
Sbjct: 635 DLGPPVNVPQVSSMQMGAVDLLGGGLDSLLGSDLGGGIGGSPAV-GQSFIPSSVPATFAP 693
Query: 77 SMGIGLVKGGVSAVAGGVTAVGSA 100
S +V G++ + T +G A
Sbjct: 694 SPTPAVVSSGLNDLFELSTGIGMA 717
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 25.8 bits (55), Expect = 7.7
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 20 PEGSMKDHPQQQPGMLSRVTGGIFSVTKGAVGATIGGVAWIGGKSLEVTKTA------VT 73
P G D +QQPGM+ G + ++ + + A +G +GG ++ + T
Sbjct: 160 PRGQPADI-RQQPGMMPH--GQLTTINQSQLSAQLG--LNMGGSNVPHNSPSPPGSKSAT 214
Query: 74 TVPSMGIGLVKGGVSAVAGGVTAVGSAVVNKVPLTGKKKDKSD 116
PS + +G ++ G ++ + K P T KKK K D
Sbjct: 215 PSPSSSVHEDEGDDTSKINGGEKRPASDMGKKPKTPKKKKKKD 257
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,476,585
Number of Sequences: 37866
Number of extensions: 175714
Number of successful extensions: 477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 39
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Search sequences |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.