Guide to the Human Genome
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Name: FAM114A1 Sequence: fasta or formatted (563aa) NCBI GI: 29789373
Description:

hypothetical protein LOC92689

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         55           3
 C cysteine            1.1          6           1
 D aspartate           5.2         29           2
 E glutamate          12.3         69           3
 F phenylalanine       1.6          9           1
 G glycine             6.2         35           3
 H histidine           2.1         12           1
 I isoleucine          3.4         19           1
 K lysine              7.1         40           2
 L leucine             9.8         55           3
 M methionine          2.3         13           1
 N asparagine          3.7         21           1
 P proline             5.0         28           2
 Q glutamine           5.0         28           2
 R arginine            2.3         13           1
 S serine              8.9         50           2
 T threonine           6.6         37           2
 V valine              6.2         35           2
 W tryptophan          0.7          4           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC92689 
FAM114A2              0.322   hypothetical protein LOC10827 
UACA                  0.022   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.022   uveal autoantigen with coiled-coil domains and ankyr...
LOC440243             0.022   PREDICTED: Putative golgin subfamily A member 6-lik...
KIAA1529              0.020   hypothetical protein LOC57653 
LOC283767             0.020   golgi autoantigen, golgin subfamily a-like 
LOC400352             0.020   PREDICTED: similar to Putative golgin subfamily A m...
CALD1                 0.020   caldesmon 1 isoform 1 
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.020   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC100132816          0.020   PREDICTED: similar to Putative golgin subfamily A m...
ITSN1                 0.019   intersectin 1 isoform ITSN-s 
ITSN1                 0.019   intersectin 1 isoform ITSN-l 
RAI14                 0.019   retinoic acid induced 14 isoform d 
RAI14                 0.019   retinoic acid induced 14 isoform c 
RAI14                 0.019   retinoic acid induced 14 isoform a 
RAI14                 0.019   retinoic acid induced 14 isoform a 
RAI14                 0.019   retinoic acid induced 14 isoform a 
GOLGA4                0.019   golgi autoantigen, golgin subfamily a, 4 
LOC727832             0.019   golgi autoantigen, golgin subfamily a-like 
MYH10                 0.018   myosin, heavy polypeptide 10, non-muscle 
RAI14                 0.018   retinoic acid induced 14 isoform b 
WDR87                 0.018   NYD-SP11 protein 
FAM186A               0.018   family with sequence similarity 186, member A [Homo...
MYH14                 0.017   myosin, heavy chain 14 isoform 1 
MYH14                 0.017   myosin, heavy chain 14 isoform 2 
MYH14                 0.017   myosin, heavy chain 14 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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