Guide to the Human Genome
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Name: LOC100288670 Sequence: fasta or formatted (290aa) NCBI GI: 239741110
Description:

PREDICTED: hypothetical protein XP_002342097

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         37           3
 C cysteine            1.0          3           1
 D aspartate           1.7          5           2
 E glutamate           2.8          8           1
 F phenylalanine       0.3          1           1
 G glycine            15.9         46           2
 H histidine           0.0          0           0
 I isoleucine          0.7          2           1
 K lysine              2.1          6           1
 L leucine             6.9         20           2
 M methionine          2.1          6           1
 N asparagine          0.3          1           1
 P proline             6.2         18           2
 Q glutamine           0.0          0           0
 R arginine            6.6         19           2
 S serine             13.4         39           3
 T threonine           7.6         22           2
 V valine             18.6         54           2
 W tryptophan          1.0          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342097 
LOC100292594          1.000   PREDICTED: hypothetical protein 
LOC100290955          1.000   PREDICTED: hypothetical protein XP_002346424 
LOC100290496          0.042   PREDICTED: hypothetical protein XP_002348126 
ELN                   0.038   elastin isoform e precursor 
ELN                   0.038   elastin isoform b precursor 
ELN                   0.038   elastin isoform a precursor 
HCFC1                 0.032   host cell factor 1 
ELN                   0.030   elastin isoform d precursor 
ELN                   0.030   elastin isoform c precursor 
LOC100294501          0.029   PREDICTED: hypothetical protein 
LOC729792             0.029   PREDICTED: hypothetical protein 
LOC729792             0.029   PREDICTED: hypothetical protein 
LOC729792             0.029   PREDICTED: hypothetical protein 
LOC100294249          0.029   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.029   PREDICTED: hypothetical protein 
LOC100294204          0.029   PREDICTED: hypothetical protein 
LOC100294136          0.029   PREDICTED: hypothetical protein 
LOC100294091          0.029   PREDICTED: hypothetical protein 
LOC730401             0.029   PREDICTED: hypothetical protein 
MUC16                 0.025   mucin 16 
MUC17                 0.023   mucin 17 
SPTY2D1               0.021   SPT2, Suppressor of Ty, domain containing 1 
RPS6KL1               0.019   ribosomal protein S6 kinase-like 1 
LOC100129410          0.019   PREDICTED: hypothetical protein 
LOC100129410          0.019   PREDICTED: hypothetical protein 
LOC100129410          0.019   PREDICTED: hypothetical protein 
LOC100293409          0.019   PREDICTED: similar to Mucin-19 
LOC100291118          0.019   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.019   PREDICTED: hypothetical protein XP_002343203 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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