Guide to the Human Genome
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Name: SNCA Sequence: fasta or formatted (140aa) NCBI GI: 4507109
Description:

alpha-synuclein isoform NACP140

Referenced in:

Mammary Tissues
Neurons

Other entries for this name:
alt mRNA [140aa] alpha-synuclein isoform NACP140
alt mRNA [140aa] alpha-synuclein isoform NACP140
alt prot [112aa] alpha-synuclein isoform NACP112
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         19           3
 C cysteine            0.0          0           0
 D aspartate           4.3          6           1
 E glutamate          12.9         18           2
 F phenylalanine       1.4          2           1
 G glycine            12.9         18           2
 H histidine           0.7          1           1
 I isoleucine          1.4          2           1
 K lysine             10.7         15           2
 L leucine             2.9          4           1
 M methionine          2.9          4           1
 N asparagine          2.1          3           1
 P proline             3.6          5           1
 Q glutamine           4.3          6           1
 R arginine            0.0          0           0
 S serine              2.9          4           1
 T threonine           7.1         10           1
 V valine             13.6         19           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha-synuclein isoform NACP140 
SNCA                  1.000   alpha-synuclein isoform NACP140 
SNCA                  1.000   alpha-synuclein isoform NACP140 
SNCA                  0.704   alpha-synuclein isoform NACP112 
SNCB                  0.528   beta-synuclein 
SNCB                  0.528   beta-synuclein 
SNCG                  0.392   synuclein, gamma (breast cancer-specific protein 1)...
VPS13D                0.028   vacuolar protein sorting 13D isoform 2 
VPS13D                0.028   vacuolar protein sorting 13D isoform 1 
VPS13C                0.024   vacuolar protein sorting 13C protein isoform 1A [Hom...
VPS13C                0.024   vacuolar protein sorting 13C protein isoform 1B [Hom...
VPS13C                0.024   vacuolar protein sorting 13C protein isoform 2B [Hom...
VPS13C                0.024   vacuolar protein sorting 13C protein isoform 2A [Hom...
SUPT16H               0.020   chromatin-specific transcription elongation factor la...
M6PRBP1               0.020   mannose 6 phosphate receptor binding protein 1 [Homo...
KIAA1881              0.016   plasma membrane associated protein, S3-12 
AKR7A3                0.016   aldo-keto reductase family 7, member A3 
C12orf23              0.012   hypothetical protein LOC90488 
TTN                   0.012   titin isoform novex-3 
TTN                   0.012   titin isoform N2-A 
TTN                   0.012   titin isoform novex-2 
TTN                   0.012   titin isoform novex-1 
TTN                   0.012   titin isoform N2-B 
AKR7A2                0.012   aldo-keto reductase family 7, member A2 
YTHDC1                0.012   splicing factor YT521-B isoform 2 
YTHDC1                0.012   splicing factor YT521-B isoform 1 
SAP30BP               0.008   transcriptional regulator protein 
APBA2                 0.008   amyloid beta A4 precursor protein-binding, family A...
APBA2                 0.008   amyloid beta A4 precursor protein-binding, family A,...
C5orf41               0.008   luman-recruiting factor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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