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Search of human proteins with 225690602
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens] 275 1e-74
gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens] 275 1e-74
gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens] 275 1e-74
gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens] 201 1e-52
gi|48255903 beta-synuclein [Homo sapiens] 157 4e-39
gi|4507111 beta-synuclein [Homo sapiens] 157 4e-39
gi|209693439 synuclein, gamma (breast cancer-specific protein 1)... 123 4e-29
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 32 0.22
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 32 0.22
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 31 0.29
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 31 0.29
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 31 0.29
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 31 0.29
gi|6005757 chromatin-specific transcription elongation factor la... 30 0.49
gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo... 30 0.84
gi|122937195 plasma membrane associated protein, S3-12 [Homo sap... 29 1.1
gi|41152114 aldo-keto reductase family 7, member A3 [Homo sapiens] 29 1.1
gi|22748615 hypothetical protein LOC90488 [Homo sapiens] 28 1.9
gi|110349721 titin isoform novex-3 [Homo sapiens] 28 3.2
gi|110349719 titin isoform N2-A [Homo sapiens] 28 3.2
gi|110349717 titin isoform novex-2 [Homo sapiens] 28 3.2
gi|110349713 titin isoform novex-1 [Homo sapiens] 28 3.2
gi|110349715 titin isoform N2-B [Homo sapiens] 28 3.2
gi|41327764 aldo-keto reductase family 7, member A2 [Homo sapiens] 28 3.2
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 28 3.2
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 28 3.2
gi|9994179 transcriptional regulator protein [Homo sapiens] 27 4.2
gi|194353992 amyloid beta A4 precursor protein-binding, family A... 27 4.2
gi|22035550 amyloid beta A4 precursor protein-binding, family A,... 27 4.2
gi|23957698 luman-recruiting factor [Homo sapiens] 27 4.2
>gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 275 bits (702), Expect = 1e-74
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
Query: 121 DNEAYEMPSEEGYQDYEPEA 140
DNEAYEMPSEEGYQDYEPEA
Sbjct: 121 DNEAYEMPSEEGYQDYEPEA 140
>gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 275 bits (702), Expect = 1e-74
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
Query: 121 DNEAYEMPSEEGYQDYEPEA 140
DNEAYEMPSEEGYQDYEPEA
Sbjct: 121 DNEAYEMPSEEGYQDYEPEA 140
>gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 275 bits (702), Expect = 1e-74
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
Query: 121 DNEAYEMPSEEGYQDYEPEA 140
DNEAYEMPSEEGYQDYEPEA
Sbjct: 121 DNEAYEMPSEEGYQDYEPEA 140
>gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens]
Length = 112
Score = 201 bits (512), Expect = 1e-52
Identities = 112/140 (80%), Positives = 112/140 (80%), Gaps = 28/140 (20%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK------------------ 102
Query: 121 DNEAYEMPSEEGYQDYEPEA 140
EGYQDYEPEA
Sbjct: 103 ----------EGYQDYEPEA 112
>gi|48255903 beta-synuclein [Homo sapiens]
Length = 134
Score = 157 bits (396), Expect = 4e-39
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 18/146 (12%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG---KNEE---GAPQEGILE 114
EQ +++GGAV + GAG+IAAATG VK+++ K EE A +E ++E
Sbjct: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE 109
Query: 115 DMPVDPDNEAYEMPSEEGYQDYEPEA 140
+ ++P+ E+YE P +E YQ+YEPEA
Sbjct: 110 PL-MEPEGESYEDPPQEEYQEYEPEA 134
>gi|4507111 beta-synuclein [Homo sapiens]
Length = 134
Score = 157 bits (396), Expect = 4e-39
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 18/146 (12%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG---KNEE---GAPQEGILE 114
EQ +++GGAV + GAG+IAAATG VK+++ K EE A +E ++E
Sbjct: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIE 109
Query: 115 DMPVDPDNEAYEMPSEEGYQDYEPEA 140
+ ++P+ E+YE P +E YQ+YEPEA
Sbjct: 110 PL-MEPEGESYEDPPQEEYQEYEPEA 134
>gi|209693439 synuclein, gamma (breast cancer-specific protein 1)
[Homo sapiens]
Length = 127
Score = 123 bits (309), Expect = 4e-29
Identities = 69/110 (62%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKE VV V +VAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQE 110
EQ V AVV+ V VA KTVE A +IA +G V+K+ L APQ+
Sbjct: 61 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQ 107
>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
Length = 4363
Score = 31.6 bits (70), Expect = 0.22
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 14 GVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTG 73
GV +A K +++ GKT + +E + + AT E + + ++ G
Sbjct: 4079 GVSNSAAKFAGTLSDGLGKTMDNR---HQSEREYIRYHAATSGEHLVAGIHGLAHGIIGG 4135
Query: 74 VTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGA---PQEGILE 114
+T+V TVEG + +GF+ LGK G P G L+
Sbjct: 4136 LTSVITSTVEGVKTEGGVSGFI--SGLGKGLVGTVTKPVAGALD 4177
>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
Length = 4388
Score = 31.6 bits (70), Expect = 0.22
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 14 GVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTG 73
GV +A K +++ GKT + +E + + AT E + + ++ G
Sbjct: 4104 GVSNSAAKFAGTLSDGLGKTMDNR---HQSEREYIRYHAATSGEHLVAGIHGLAHGIIGG 4160
Query: 74 VTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGA---PQEGILE 114
+T+V TVEG + +GF+ LGK G P G L+
Sbjct: 4161 LTSVITSTVEGVKTEGGVSGFI--SGLGKGLVGTVTKPVAGALD 4202
>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
sapiens]
Length = 3710
Score = 31.2 bits (69), Expect = 0.29
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3397 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3456
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG 101
+K +E+++ GG VV GVT + K VEGA AA GF K +G
Sbjct: 3457 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK--GIG 3513
Query: 102 KNEEGA---PQEGILE 114
K GA P GI++
Sbjct: 3514 KGLVGAVARPTGGIVD 3529
Score = 26.2 bits (56), Expect = 9.3
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3508 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3547
>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
sapiens]
Length = 3585
Score = 31.2 bits (69), Expect = 0.29
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3397 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3456
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG 101
+K +E+++ GG VV GVT + K VEGA AA GF K +G
Sbjct: 3457 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK--GIG 3513
Query: 102 KNEEGA---PQEGILE 114
K GA P GI++
Sbjct: 3514 KGLVGAVARPTGGIVD 3529
Score = 26.2 bits (56), Expect = 9.3
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3508 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3547
>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
sapiens]
Length = 3628
Score = 31.2 bits (69), Expect = 0.29
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3440 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3499
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG 101
+K +E+++ GG VV GVT + K VEGA AA GF K +G
Sbjct: 3500 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK--GIG 3556
Query: 102 KNEEGA---PQEGILE 114
K GA P GI++
Sbjct: 3557 KGLVGAVARPTGGIVD 3572
Score = 26.2 bits (56), Expect = 9.3
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3551 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3590
>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
sapiens]
Length = 3753
Score = 31.2 bits (69), Expect = 0.29
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3440 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3499
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLG 101
+K +E+++ GG VV GVT + K VEGA AA GF K +G
Sbjct: 3500 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK--GIG 3556
Query: 102 KNEEGA---PQEGILE 114
K GA P GI++
Sbjct: 3557 KGLVGAVARPTGGIVD 3572
Score = 26.2 bits (56), Expect = 9.3
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3551 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3590
>gi|6005757 chromatin-specific transcription elongation factor large
subunit [Homo sapiens]
Length = 1047
Score = 30.4 bits (67), Expect = 0.49
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 94 FVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA 140
F++ + G + E E +ED +P + YE E+ +DY EA
Sbjct: 924 FLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEA 970
>gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo
sapiens]
Length = 434
Score = 29.6 bits (65), Expect = 0.84
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 6 KGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTN 65
+GL K +E + + T++ +A+ TKE V S +E V TVA + E V
Sbjct: 98 RGLDKLEENLPILQQPTEKVLAD----TKELVSSKVSGAQEMVSSAKDTVATQLSEAVDA 153
Query: 66 VGGAVVTGVTAVAQKTVEGAGSI 88
GAV +GV G S+
Sbjct: 154 TRGAVQSGVDKTKSVVTGGVQSV 176
>gi|122937195 plasma membrane associated protein, S3-12 [Homo
sapiens]
Length = 1357
Score = 29.3 bits (64), Expect = 1.1
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 7 GLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNV 66
G + +G V KT Q +A T + +K +G V G + TK +T
Sbjct: 824 GAANVAKGAVQTGLKTTQNIATGTKNTLGSGVTGAAKVAKGAVQG---GLDTTKSVLTGT 880
Query: 67 GGAVVTGVTA---VAQKTVE 83
AV TG+T +A+ TV+
Sbjct: 881 KDAVSTGLTGAVNLAKGTVQ 900
Score = 28.1 bits (61), Expect = 2.5
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 7 GLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNV 66
G+ AK + + GV AA K G + G KT + + G N
Sbjct: 803 GVDTAKTVLTGTKDTVCSGVTGAANVAK-GAVQTGLKTTQNIATGTK-----------NT 850
Query: 67 GGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGA 107
G+ VTG VA+ V+G + KD + GA
Sbjct: 851 LGSGVTGAAKVAKGAVQGGLDTTKSVLTGTKDAVSTGLTGA 891
>gi|41152114 aldo-keto reductase family 7, member A3 [Homo sapiens]
Length = 331
Score = 29.3 bits (64), Expect = 1.1
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Query: 23 KQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTA---VAQ 79
KQ V G T +Y KE G+A V EK + +T T
Sbjct: 217 KQPVGRFFGNTW-AEMYRNRYWKEHHFEGIALV-EKALQAAYGASAPSMTSATLRWMYHH 274
Query: 80 KTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEE 131
++GA A G +QL +N A +EG LE VD N+A+ + + E
Sbjct: 275 SQLQGAHGDAVILGMSSLEQLEQNLAAA-EEGPLEPAVVDAFNQAWHLVTHE 325
>gi|22748615 hypothetical protein LOC90488 [Homo sapiens]
Length = 116
Score = 28.5 bits (62), Expect = 1.9
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 29 AAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTV 82
A G T GV ++G K+ E V TV V AV GVTAV V
Sbjct: 49 AVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 27.7 bits (60), Expect = 3.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 27.7 bits (60), Expect = 3.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 27.7 bits (60), Expect = 3.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 27.7 bits (60), Expect = 3.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 27.7 bits (60), Expect = 3.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|41327764 aldo-keto reductase family 7, member A2 [Homo sapiens]
Length = 359
Score = 27.7 bits (60), Expect = 3.2
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 68 GAVVTGVTAVAQK------TVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPD 121
GA VT+ A + ++GA A G +QL +N A +EG LE VD
Sbjct: 285 GASAPSVTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNL-AATEEGPLEPAVVDAF 343
Query: 122 NEAYEMPSEE 131
N+A+ + + E
Sbjct: 344 NQAWHLVAHE 353
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 27.7 bits (60), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 102 KNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPE 139
+NEE +E + ED V+ D E E E+G ++ E E
Sbjct: 199 ENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEE 236
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 27.7 bits (60), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 102 KNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPE 139
+NEE +E + ED V+ D E E E+G ++ E E
Sbjct: 199 ENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEE 236
>gi|9994179 transcriptional regulator protein [Homo sapiens]
Length = 308
Score = 27.3 bits (59), Expect = 4.2
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 45 KEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNE 104
K+ V+ +A AE ++ + G + AV E G ++ A G +LG +E
Sbjct: 4 KKNVLSSLAVYAEDSEPESDGEAG-----IEAVGSAAEEKGGLVSDAYGEDDFSRLGGDE 58
Query: 105 EGAPQEGILEDMPVDPDNEAYEMPSEEGYQD 135
+G +E + D+ E P + +D
Sbjct: 59 DGYEEEEDENSRQSEDDDSETEKPEADDPKD 89
>gi|194353992 amyloid beta A4 precursor protein-binding, family A,
member 2 isoform b [Homo sapiens]
Length = 737
Score = 27.3 bits (59), Expect = 4.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 98 DQLGKNEEGAPQEG----------ILEDMPV-----DPDNEAYEMPSEEGYQDYEPE 139
D G + G EG I ED P D + + + S+EGYQDY PE
Sbjct: 143 DSAGPHPHGHEAEGSQDYPDGQLPIPEDEPSVLEAHDQEEDGHYCASKEGYQDYYPE 199
>gi|22035550 amyloid beta A4 precursor protein-binding, family A,
member 2 isoform a [Homo sapiens]
Length = 749
Score = 27.3 bits (59), Expect = 4.2
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 98 DQLGKNEEGAPQEG----------ILEDMPV-----DPDNEAYEMPSEEGYQDYEPE 139
D G + G EG I ED P D + + + S+EGYQDY PE
Sbjct: 143 DSAGPHPHGHEAEGSQDYPDGQLPIPEDEPSVLEAHDQEEDGHYCASKEGYQDYYPE 199
>gi|23957698 luman-recruiting factor [Homo sapiens]
Length = 639
Score = 27.3 bits (59), Expect = 4.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 93 GFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQD 135
GF + +L +NEE +E ED D D++ + SE GY++
Sbjct: 372 GFGSEHELSENEEEEEEE---EDYEDDKDDDISDTFSEPGYEN 411
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.303 0.125 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,860,563
Number of Sequences: 37866
Number of extensions: 198499
Number of successful extensions: 526
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 71
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.