Guide to the Human Genome
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Name: VPS13C Sequence: fasta or formatted (3585aa) NCBI GI: 66348091
Description:

vacuolar protein sorting 13C protein isoform 1B

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [3710aa] vacuolar protein sorting 13C protein isoform 1A
alt prot [3753aa] vacuolar protein sorting 13C protein isoform 2A
alt prot [3628aa] vacuolar protein sorting 13C protein isoform 2B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7        203           3
 C cysteine            1.0         35           1
 D aspartate           5.6        202           2
 E glutamate           7.0        251           3
 F phenylalanine       4.0        142           2
 G glycine             4.8        171           2
 H histidine           2.0         73           2
 I isoleucine          7.2        258           3
 K lysine              7.6        273           3
 L leucine            10.9        391           3
 M methionine          2.3         84           2
 N asparagine          4.4        158           2
 P proline             4.2        149           2
 Q glutamine           4.7        168           2
 R arginine            3.7        134           3
 S serine              8.6        308           3
 T threonine           5.3        189           2
 V valine              7.4        267           3
 W tryptophan          1.0         37           2
 Y tyrosine            2.6         92           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 13C protein isoform 1B [Hom... 
VPS13C                0.998   vacuolar protein sorting 13C protein isoform 1A [Hom...
VPS13C                0.997   vacuolar protein sorting 13C protein isoform 2B [Hom...
VPS13C                0.995   vacuolar protein sorting 13C protein isoform 2A [Hom...
VPS13A                0.236   vacuolar protein sorting 13A isoform B 
VPS13A                0.236   vacuolar protein sorting 13A isoform D 
VPS13A                0.236   vacuolar protein sorting 13A isoform A 
VPS13A                0.229   vacuolar protein sorting 13A isoform C 
VPS13D                0.030   vacuolar protein sorting 13D isoform 2 
VPS13D                0.030   vacuolar protein sorting 13D isoform 1 
VPS13B                0.012   vacuolar protein sorting 13B isoform 5 
VPS13B                0.012   vacuolar protein sorting 13B isoform 1 
VPS13B                0.008   vacuolar protein sorting 13B isoform 4 
VPS13B                0.008   vacuolar protein sorting 13B isoform 3 
ATG2B                 0.004   ATG2 autophagy related 2 homolog B 
LOC400352             0.002   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.002   PREDICTED: similar to Putative golgin subfamily A m...
LOC645202             0.002   PREDICTED: hypothetical protein LOC645202 
LOC727832             0.002   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.002   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.002   PREDICTED: Putative golgin subfamily A member 6-lik...
CENPF                 0.002   centromere protein F 
KIF11                 0.002   kinesin family member 11 
LOC649201             0.002   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.002   PREDICTED: similar to paraneoplastic antigen MA1 [H...
DIAPH3                0.002   diaphanous homolog 3 isoform b 
DIAPH3                0.002   diaphanous homolog 3 isoform a 
ERCC5                 0.002   XPG-complementing protein 
C10orf118             0.001   CTCL tumor antigen L14-2 
UHRF1BP1L             0.001   UHRF1 (ICBP90) binding protein 1-like isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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