SNCB 29479

Name: SNCB	Sequence: fasta or formatted (134aa)		NCBI GI: 4507111
Description: beta-synuclein		Referenced in: Mammary Tissues Neurons
Other entries for this name: alt mRNA [134aa] beta-synuclein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 13.4 18 3 C cysteine 0.0 0 0 D aspartate 2.2 3 1 E glutamate 18.7 25 2 F phenylalanine 2.2 3 1 G glycine 9.7 13 2 H histidine 0.7 1 1 I isoleucine 1.5 2 1 K lysine 8.2 11 1 L leucine 5.2 7 1 M methionine 3.0 4 1 N asparagine 0.7 1 1 P proline 6.0 8 2 Q glutamine 4.5 6 1 R arginine 1.5 2 1 S serine 4.5 6 1 T threonine 5.2 7 1 V valine 9.7 13 2 W tryptophan 0.0 0 0 Y tyrosine 3.0 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 beta-synuclein SNCB 1.000 beta-synuclein SNCA 0.555 alpha-synuclein isoform NACP140 SNCA 0.555 alpha-synuclein isoform NACP140 SNCA 0.555 alpha-synuclein isoform NACP140 SNCA 0.445 alpha-synuclein isoform NACP112 SNCG 0.382 synuclein, gamma (breast cancer-specific protein 1)... NOL3 0.042 nucleolar protein 3 DCAF8L2 0.034 DDB1 and CUL4 associated factor 8-like 2 TCERG1 0.029 transcription elongation regulator 1 isoform 2 [Homo... TCERG1 0.029 transcription elongation regulator 1 isoform 1 [Homo... TTN 0.029 titin isoform N2-A LOC727838 0.029 PREDICTED: similar to cancer/testis antigen family ... LOC727838 0.029 PREDICTED: similar to cancer/testis antigen family ... LOC727838 0.029 PREDICTED: similar to cancer/testis antigen family ... DGKK 0.029 diacylglycerol kinase kappa CCNB1 0.025 cyclin B1 ZBTB4 0.025 zinc finger and BTB domain containing 4 ZBTB4 0.025 zinc finger and BTB domain containing 4 CT47B1 0.025 cancer/testis antigen family 147, member B1 ZEB1 0.021 zinc finger E-box binding homeobox 1 isoform a [Hom... ZEB1 0.021 zinc finger E-box binding homeobox 1 isoform b [Hom... MYST4 0.021 MYST histone acetyltransferase (monocytic leukemia)... G3BP1 0.021 Ras-GTPase-activating protein SH3-domain-binding prot... G3BP1 0.021 Ras-GTPase-activating protein SH3-domain-binding pro... TPR 0.017 nuclear pore complex-associated protein TPR LOC100287558 0.017 PREDICTED: hypothetical protein XP_002343325 RYR1 0.017 skeletal muscle ryanodine receptor isoform 2 RYR1 0.017 skeletal muscle ryanodine receptor isoform 1 SHANK3 0.017 SH3 and multiple ankyrin repeat domains 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.