Guide to the Human Genome
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Name: VPS13D Sequence: fasta or formatted (4388aa) NCBI GI: 54607139
Description:

vacuolar protein sorting 13D isoform 1

Referenced in:

ER, Golgi, and the Secretory Pathway
Small RNAs in RNA Processing

Other entries for this name:
alt prot [4363aa] vacuolar protein sorting 13D isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4        236           2
 C cysteine            1.5         66           2
 D aspartate           5.1        222           2
 E glutamate           7.1        310           3
 F phenylalanine       4.6        200           2
 G glycine             5.8        256           3
 H histidine           2.5        110           2
 I isoleucine          4.9        213           2
 K lysine              5.7        252           3
 L leucine            10.8        475           4
 M methionine          2.1         90           2
 N asparagine          4.1        182           2
 P proline             5.5        241           3
 Q glutamine           4.8        210           3
 R arginine            5.2        228           3
 S serine              8.9        389           4
 T threonine           5.7        249           3
 V valine              7.0        309           3
 W tryptophan          0.8         35           2
 Y tyrosine            2.6        115           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 13D isoform 1 
VPS13D                0.993   vacuolar protein sorting 13D isoform 2 
VPS13C                0.024   vacuolar protein sorting 13C protein isoform 1A [Hom...
VPS13C                0.024   vacuolar protein sorting 13C protein isoform 1B [Hom...
VPS13C                0.022   vacuolar protein sorting 13C protein isoform 2B [Hom...
VPS13C                0.022   vacuolar protein sorting 13C protein isoform 2A [Hom...
VPS13A                0.021   vacuolar protein sorting 13A isoform B 
VPS13A                0.021   vacuolar protein sorting 13A isoform D 
VPS13A                0.021   vacuolar protein sorting 13A isoform A 
VPS13A                0.021   vacuolar protein sorting 13A isoform C 
VPS13B                0.006   vacuolar protein sorting 13B isoform 5 
VPS13B                0.006   vacuolar protein sorting 13B isoform 1 
VPS13B                0.005   vacuolar protein sorting 13B isoform 4 
VPS13B                0.005   vacuolar protein sorting 13B isoform 3 
ATG2A                 0.003   autophagy related 2A 
ATG2B                 0.003   ATG2 autophagy related 2 homolog B 
UHRF1BP1L             0.002   UHRF1 (ICBP90) binding protein 1-like isoform b [Hom...
UHRF1BP1L             0.002   UHRF1 (ICBP90) binding protein 1-like isoform a [Hom...
LOC100292957          0.002   PREDICTED: hypothetical protein 
HCFC1                 0.002   host cell factor 1 
USP5                  0.001   ubiquitin specific peptidase 5 isoform 2 
USP5                  0.001   ubiquitin specific peptidase 5 isoform 1 
TSFM                  0.001   Ts translation elongation factor, mitochondrial pre...
MYO18A                0.001   myosin 18A isoform a 
UHRF1BP1              0.001   ICBP90 binding protein 1 
MYO18A                0.001   myosin 18A isoform b 
DZIP1L                0.001   DAZ interacting protein 1-like 
AFF4                  0.001   ALL1 fused gene from 5q31 
NGRN                  0.001   neugrin 
LOC283685             0.001   PREDICTED: golgi autoantigen, golgin subfamily a-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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