VPS13C 34566

Name: VPS13C	Sequence: fasta or formatted (3753aa)		NCBI GI: 66347828
Description: vacuolar protein sorting 13C protein isoform 2A		Referenced in: ER, Golgi, and the Secretory Pathway
Other entries for this name: alt prot [3710aa] vacuolar protein sorting 13C protein isoform 1A alt prot [3628aa] vacuolar protein sorting 13C protein isoform 2B alt prot [3585aa] vacuolar protein sorting 13C protein isoform 1B
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 210 3 C cysteine 1.1 41 1 D aspartate 5.6 209 2 E glutamate 6.9 259 3 F phenylalanine 4.0 150 2 G glycine 4.8 181 2 H histidine 2.1 79 2 I isoleucine 7.1 266 3 K lysine 7.9 297 3 L leucine 10.8 404 3 M methionine 2.3 87 2 N asparagine 4.4 164 2 P proline 4.2 157 2 Q glutamine 4.7 175 3 R arginine 3.9 145 3 S serine 8.5 319 3 T threonine 5.2 196 2 V valine 7.4 279 3 W tryptophan 1.0 38 2 Y tyrosine 2.6 97 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 13C protein isoform 2A [Hom... VPS13C 0.985 vacuolar protein sorting 13C protein isoform 1A [Hom... VPS13C 0.964 vacuolar protein sorting 13C protein isoform 2B [Hom... VPS13C 0.949 vacuolar protein sorting 13C protein isoform 1B [Hom... VPS13A 0.228 vacuolar protein sorting 13A isoform A VPS13A 0.225 vacuolar protein sorting 13A isoform B VPS13A 0.225 vacuolar protein sorting 13A isoform D VPS13A 0.221 vacuolar protein sorting 13A isoform C VPS13D 0.026 vacuolar protein sorting 13D isoform 2 VPS13D 0.026 vacuolar protein sorting 13D isoform 1 VPS13B 0.011 vacuolar protein sorting 13B isoform 5 VPS13B 0.011 vacuolar protein sorting 13B isoform 1 VPS13B 0.006 vacuolar protein sorting 13B isoform 4 VPS13B 0.006 vacuolar protein sorting 13B isoform 3 ATG2B 0.003 ATG2 autophagy related 2 homolog B LOC400352 0.002 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.002 PREDICTED: similar to Putative golgin subfamily A m... LOC645202 0.002 PREDICTED: hypothetical protein LOC645202 LOC727832 0.002 golgi autoantigen, golgin subfamily a-like LOC283767 0.002 golgi autoantigen, golgin subfamily a-like LOC440243 0.002 PREDICTED: Putative golgin subfamily A member 6-lik... CENPF 0.002 centromere protein F KIF11 0.002 kinesin family member 11 LOC649201 0.002 PREDICTED: similar to paraneoplastic antigen MA1 [H... PPP1R9A 0.002 protein phosphatase 1, regulatory (inhibitor) subuni... LOC649201 0.001 PREDICTED: similar to paraneoplastic antigen MA1 [H... DIAPH3 0.001 diaphanous homolog 3 isoform b DIAPH3 0.001 diaphanous homolog 3 isoform a ERCC5 0.001 XPG-complementing protein UHRF1BP1L 0.001 UHRF1 (ICBP90) binding protein 1-like isoform b [Hom... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.