Guide to the Human Genome
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Search of human proteins with 224809466

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens]
         (489 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens]        984   0.0  
gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens]         956   0.0  
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s...   531   e-151
gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo s...   372   e-103
gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo s...   311   9e-85
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   55   1e-07
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]               52   1e-06
gi|34452173 integrin alpha X precursor [Homo sapiens]                  50   6e-06
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                47   4e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          44   4e-04
gi|31542984 inter-alpha (globulin) inhibitor H4 [Homo sapiens]         40   0.005
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]                 39   0.008
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ...    39   0.014
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [...    39   0.014
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H...    38   0.018
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho...    38   0.018
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom...    38   0.018
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]                 37   0.031
gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]               37   0.041
gi|27754776 ficolin 3 isoform 1 precursor [Homo sapiens]               37   0.041
gi|11321565 matrilin 3 precursor [Homo sapiens]                        37   0.041
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]                 37   0.041
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    36   0.069
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              36   0.069
gi|210032580 SET domain containing 1B [Homo sapiens]                   36   0.091
gi|150036262 chloride channel accessory 4 [Homo sapiens]               35   0.12 
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    35   0.12 
gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]         35   0.15 
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]        35   0.15 
gi|123701326 zinc finger protein 831 [Homo sapiens]                    35   0.15 

>gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens]
          Length = 489

 Score =  984 bits (2545), Expect = 0.0
 Identities = 489/489 (100%), Positives = 489/489 (100%)

Query: 1   MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60
           MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI
Sbjct: 1   MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60

Query: 61  EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120
           EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI
Sbjct: 61  EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120

Query: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
           HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD
Sbjct: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180

Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
           FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240

Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
           GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300

Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
           KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP
Sbjct: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360

Query: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
           KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE
Sbjct: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420

Query: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDEVCIW 480
           ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDEVCIW
Sbjct: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDEVCIW 480

Query: 481 ECIEKELTA 489
           ECIEKELTA
Sbjct: 481 ECIEKELTA 489


>gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens]
          Length = 488

 Score =  956 bits (2471), Expect = 0.0
 Identities = 476/476 (100%), Positives = 476/476 (100%)

Query: 1   MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60
           MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI
Sbjct: 1   MVAERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWI 60

Query: 61  EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120
           EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI
Sbjct: 61  EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYI 120

Query: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
           HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD
Sbjct: 121 HEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180

Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
           FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240

Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
           GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300

Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
           KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP
Sbjct: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360

Query: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
           KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE
Sbjct: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420

Query: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE 476
           ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE
Sbjct: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE 476


>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
           sapiens]
          Length = 564

 Score =  531 bits (1367), Expect = e-151
 Identities = 265/475 (55%), Positives = 340/475 (71%), Gaps = 3/475 (0%)

Query: 3   AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
           AER        WL     +L+ +G GG  R    P+C   FDLYF+LDKSGSV ++W EI
Sbjct: 4   AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62

Query: 63  YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
           Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63  YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122

Query: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
           G + A+EQI  +   G +T+S+IIALTDG+L   +  Y+E+EA  SR LGA VYCVGV D
Sbjct: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182

Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
           F + QL RIADSK+ VFPV  GFQAL+GII+SIL +SC EIL  +PS++C GE FQ+V+ 
Sbjct: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242

Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
           G GF        VLC++ +N++ T + KP SV+   +LCPAPIL + G    + VS N G
Sbjct: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302

Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
            S IS S+I+T T CS+G    I +L+L LLL + L+WWFWPLCC V+IK+ PPPPA   
Sbjct: 303 LSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAEES 362

Query: 361 KEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLEKAKNAVVKIPE 420
           +EE+++ LP KKWPTVDASYYGGRGVGGIKRMEVRWG+KGSTEEGA+LEKAKNA VK+PE
Sbjct: 363 EEEDDDGLPKKKWPTVDASYYGGRGVGGIKRMEVRWGEKGSTEEGAKLEKAKNARVKMPE 422

Query: 421 ETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGD 475
           +  E   PR             KWY+PIKG+LDALW LLR+ YDRVS+MRPQ GD
Sbjct: 423 QEYEFPEPRNLNNNMRRPSSPRKWYSPIKGKLDALWVLLRKGYDRVSVMRPQPGD 477


>gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo
           sapiens]
          Length = 368

 Score =  372 bits (956), Expect = e-103
 Identities = 190/366 (51%), Positives = 253/366 (69%), Gaps = 7/366 (1%)

Query: 3   AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
           AER        WL     +L+ +G GG  R    P+C   FDLYF+LDKSGSV ++W EI
Sbjct: 4   AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62

Query: 63  YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
           Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63  YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122

Query: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
           G + A+EQI  +   G +T+S+IIALTDG+L   +  Y+E+EA  SR LGA VYCVGV D
Sbjct: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182

Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
           F + QL RIADSK+ VFPV  GFQAL+GII+SIL +SC EIL  +PS++C GE FQ+V+ 
Sbjct: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242

Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
           G GF        VLC++ +N++ T + KP SV+   +LCPAPIL + G    + VS N G
Sbjct: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302

Query: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
            S IS S+I+T T CS+G    I +L+L LLL + L+WWFWPLCC V+IK+ PPPPA   
Sbjct: 303 LSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPA--- 359

Query: 361 KEEEEE 366
            EE EE
Sbjct: 360 -EESEE 364


>gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo
           sapiens]
          Length = 333

 Score =  311 bits (797), Expect = 9e-85
 Identities = 162/316 (51%), Positives = 218/316 (68%), Gaps = 3/316 (0%)

Query: 3   AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
           AER        WL     +L+ +G GG  R    P+C   FDLYF+LDKSGSV ++W EI
Sbjct: 4   AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62

Query: 63  YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
           Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63  YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122

Query: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
           G + A+EQI  +   G +T+S+IIALTDG+L   +  Y+E+EA  SR LGA VYCVGV D
Sbjct: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182

Query: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
           F + QL RIADSK+ VFPV  GFQAL+GII+SIL +SC EIL  +PS++C GE FQ+V+ 
Sbjct: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242

Query: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
           G GF        VLC++ +N++ T + KP SV+   +LCPAPIL + G    + VS N G
Sbjct: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302

Query: 301 KSVISGSLIVTATECS 316
            S IS S+I+T T CS
Sbjct: 303 LSFISSSVIITTTHCS 318


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 27/242 (11%)

Query: 44  DLYFVLDKSGSV-ANNWIEIYNFVQQLAERF-VSP-EMRLSFIVFSSQATIILPLT--GD 98
           D+Y ++D SGS  A ++ E+  F+ ++   F ++P ++R+  + ++    +   +    +
Sbjct: 436 DIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSN 495

Query: 99  RGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG---GLKTSSIIIALTDG--KLDG 153
           +  + K +E+++++   G T     L      +QKA    G K    ++ LT+G  K   
Sbjct: 496 KQDLGKAIENIRQMG--GNTNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNGMSKDSI 553

Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSI 213
           L P+   +E  I       VY +G+ +  Q QL  IA  +++V+ V   F ALK I N +
Sbjct: 554 LEPANRLREEHIR------VYAIGIKEANQTQLREIAGEEKRVYYVH-DFDALKDIRNQV 606

Query: 214 LAQSCTEILELQPSSVCVGEEFQIV-LSGRGFMLGSRNGSVLCTYTVNETYTTSVKPVSV 272
           + + CTE         C   +  I+ L      +G  N S + T+  N    + + P  V
Sbjct: 607 VQEICTE-------EACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRV 659

Query: 273 QL 274
           Q+
Sbjct: 660 QI 661



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 44/270 (16%)

Query: 44   DLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VS-PEMRLSFIVFSSQATIILPLTGDRG 100
            DL F++D S S+  N++ ++  F+  + + F VS   +R+    FS       PL    G
Sbjct: 1000 DLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFSDTYHPEFPLGTFIG 1059

Query: 101  K--ISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK----TSSIIIALTDGKLDGL 154
            +  IS  +E++K++   G T+I   L+      +   G +    T  +++ LTDG+    
Sbjct: 1060 EKEISFQIENIKQI--FGNTHIGAALREVEHYFRPDMGSRINTGTPQVLLVLTDGQSQDE 1117

Query: 155  VPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSIL 214
            V   AE      R  G  +Y VG+ D +  QL +I  + E+   V   F  LK +   I+
Sbjct: 1118 VAQAAEA----LRHRGIDIYSVGIGDVDDQQLIQITGTAEKKLTVH-NFDELKKVNKRIV 1172

Query: 215  AQSCTEILE-------LQPSSVCVGEEFQIVLSGRGFMLGSRNGSVLCTYTVNETYTTSV 267
               CT   E       +    V   E+ Q +L G+ +M               ETY   +
Sbjct: 1173 RNICTTAGESNCFVDVVVGFDVSTQEKGQTLLEGQPWM---------------ETYLQDI 1217

Query: 268  KPVSVQLNSMLCPAPILNKAGETLDVSVSF 297
                  LN + C      + G    VSV+F
Sbjct: 1218 LRAISSLNGVSC------EVGTETQVSVAF 1241



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 14/183 (7%)

Query: 44  DLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VSPE-MRLSFIVFS--SQATIILPLTGD 98
           D+ F++D SGS+   N+ ++  F++ L  +  + P+ +++  + FS  ++    L     
Sbjct: 622 DIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMS 681

Query: 99  RGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTS--SIIIALTDGKLDGLVP 156
           +  IS  ++ +  +     T     L   ++      G + +    +I +TDG+   +V 
Sbjct: 682 QSDISNAIDQMAHIGQT--TLTGSALSFVSQYFSPTKGARPNIRKFLILITDGEAQDIV- 738

Query: 157 SYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQ 216
              ++ A + R  G  +Y VGV      QLE I+   E VF V+  F  L+ I + ++  
Sbjct: 739 ---KEPAVVLRQEGVIIYSVGVFGSNVTQLEEISGRPEMVFYVE-NFDILQRIEDDLVFG 794

Query: 217 SCT 219
            C+
Sbjct: 795 ICS 797



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 20/202 (9%)

Query: 29  GLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSP------EMRLSF 82
           G+   +E+       D+ FV+D SGS+     + YN ++      V        ++R   
Sbjct: 794 GICSPREECKRIEVLDVVFVIDSSGSID---YDEYNIMKDFMIGLVKKADVGKNQVRFGA 850

Query: 83  IVFSSQATIILPLT--GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTS 140
           + ++    ++  L   G + ++   L++ + +   G TY  E L  ++    +A G + +
Sbjct: 851 LKYADDPEVLFYLDDFGTKLEVISVLQNDQAMG--GSTYTAEALGFSDHMFTEARGSRLN 908

Query: 141 ----SIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQV 196
                ++I +TDG+            AK  R  G  V  VG+      +L  +A S ++ 
Sbjct: 909 KGVPQVLIVITDGESHD--ADKLNATAKALRDKGILVLAVGIDGANPVELLAMAGSSDKY 966

Query: 197 FPVKGGFQALKGIINSILAQSC 218
           F V+  F  LKGI + + A  C
Sbjct: 967 FFVE-TFGGLKGIFSDVTASVC 987


>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
          Length = 2526

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 16/197 (8%)

Query: 39  CRRA--FDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSF--IVFSSQATIIL 93
           C+R    D+ FVLD SGS+   + + + N    L ++      R+ F  + +S Q  I+ 
Sbjct: 807 CKRITLLDVVFVLDHSGSIKKQYQDHMINLTIHLVKKADVGRDRVQFGALKYSDQPNILF 866

Query: 94  PLT--GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK----TSSIIIALT 147
            L    +R  I + L   KR    G TY  + LK AN    +  G +       ++I +T
Sbjct: 867 YLNTYSNRSAIIENLR--KRRDTGGNTYTAKALKHANALFTEEHGSRIKQNVKQMLIVIT 924

Query: 148 DGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALK 207
           DG+            A   R+ G +++ VGV    Q +LE +A +K     V   F  LK
Sbjct: 925 DGESHD--HDQLNDTALELRNKGITIFAVGVGKANQKELEGMAGNKNNTIYV-DNFDKLK 981

Query: 208 GIINSILAQSCTEILEL 224
            +   +  + CTE  E+
Sbjct: 982 DVFTLVQERMCTEAPEV 998



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 24/208 (11%)

Query: 44  DLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLTGDRG 100
           D++F++D S S+     E I  F+ ++ E F + P+ +R+  + +S    +   +T    
Sbjct: 442 DIHFLIDGSSSIQEKQFEQIKRFMLEVTEMFSIGPDKVRVGVVQYSDDTEVEFYITDYSN 501

Query: 101 KIS--KGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSI---IIALTDGKLDGLV 155
            I   K + ++K+++  G TY  + L    + I+     + S +   +I LTDG     V
Sbjct: 502 DIDLRKAIFNIKQLT--GGTYTGKALDYILQIIKNGMKDRMSKVPCYLIVLTDGMSTDRV 559

Query: 156 PSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILA 215
                + AK  R+   +V+ VG+    + +L+ IA  +E+V      F ALK I N ++ 
Sbjct: 560 V----EPAKRLRAEQITVHAVGIGAANKIELQEIAGKEERV-SFGQNFDALKSIKNEVVR 614

Query: 216 QSCTE---------ILELQPSSVCVGEE 234
           + C E         I+ L  SS  +G E
Sbjct: 615 EICAEKGCEDMKADIMFLVDSSWSIGNE 642



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 14/182 (7%)

Query: 44  DLYFVLDKSGSVAN-NWIEIYNFVQQLAERFV--SPEMRLSFIVFSSQATIILPLTGDRG 100
           D+ F++D S S+ N N+ ++  F++ L  +    + + ++  + FS +      L  +R 
Sbjct: 628 DIMFLVDSSWSIGNENFRKMKIFMKNLLTKIQIGADKTQIGVVQFSDKTKEEFQL--NRY 685

Query: 101 KISKGLED-LKRVSPVGE-TYIHEGLKLANEQIQKAGG--LKTSSIIIALTDGKLDGLVP 156
              + + D + R+S + E T   + L    +    + G  L     +I +TDG    +  
Sbjct: 686 FTQQEISDAIDRMSLINEGTLTGKALNFVGQYFTHSKGARLGAKKFLILITDG----VAQ 741

Query: 157 SYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQ 216
                 A+I R    +++ VGV +  ++QLE I+     VF V+  F  LK +   ++ +
Sbjct: 742 DDVRDPARILRGKDVTIFSVGVYNANRSQLEEISGDSSLVFHVE-NFDHLKALERKLIFR 800

Query: 217 SC 218
            C
Sbjct: 801 VC 802


>gi|34452173 integrin alpha X precursor [Homo sapiens]
          Length = 1163

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 22/239 (9%)

Query: 21  LLVLSGPGGL---LRAQEQPSCRRAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERFVSP 76
           L  L GP  L   L    Q   R+  D+ F++D SGS+++ N+  + NFV+ +  +F  P
Sbjct: 125 LCFLLGPTQLTQRLPVSRQECPRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRP 184

Query: 77  EMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPV-GETYIHEGLK-LANEQIQKA 134
             + S + FS++          R + S  L  L  V  + G TY    ++ + +     +
Sbjct: 185 STQFSLMQFSNKFQTHFTFEEFR-RSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHAS 243

Query: 135 GGLK--TSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGV-LDFEQ----AQLE 187
            G +   + I+I +TDGK +G    Y +    ++ + G   Y +GV L F+      +L 
Sbjct: 244 YGARRDAAKILIVITDGKKEGDSLDYKD-VIPMADAAGIIRYAIGVGLAFQNRNSWKELN 302

Query: 188 RIAD--SKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLSGRGF 244
            IA   S+E +F V+  F ALK I N    Q   +I  ++ +       F++ ++  GF
Sbjct: 303 DIASKPSQEHIFKVE-DFDALKDIQN----QLKEKIFAIEGTETTSSSSFELEMAQEGF 356


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 64/231 (27%), Positives = 97/231 (41%), Gaps = 22/231 (9%)

Query: 19  LWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSP 76
           LW+L+L   GG  +AQ        +DL F+LD S SV     E +  +V  L + F V P
Sbjct: 13  LWMLLLWSGGGGCQAQRAGCKSVHYDLVFLLDTSSSVGKEDFEKVRQWVANLVDTFEVGP 72

Query: 77  E-MRLSFIVFSSQATII--LPLTGDRGKISKGLEDLKRVSPVGETYIHEGLK--LANEQI 131
           +  R+  + +S + T    L L G + ++      L      G T   + L+   A    
Sbjct: 73  DRTRVGVVRYSDRPTTAFELGLFGSQEEVKAAARRLAYHG--GNTNTGDALRYITARSFS 130

Query: 132 QKAGGLKT----SSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLE 187
             AGG         + I LTDG+   LV       A  +   G  ++ VGV +  + +LE
Sbjct: 131 PHAGGRPRDRAYKQVAILLTDGRSQDLVLD----AAAAAHRAGIRIFAVGVGEALKEELE 186

Query: 188 RIADSKE--QVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQ 236
            IA   +   VF V   F A+  I   +  + C  +  L PS    G+ F+
Sbjct: 187 EIASEPKSAHVFHV-SDFNAIDKIRGKLRRRLCENV--LCPSVRVEGDRFK 234


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 22/204 (10%)

Query: 31  LRAQ--EQPSCRRAF--DLYFVLDKSGSVA-NNWIEIYNFVQQLAERFVSPE----MRLS 81
           +RAQ  E+ +C R +  D+ F+LD S S+  +N+ E+ +F++ L   F        +R +
Sbjct: 21  VRAQHRERVTCTRLYAADIVFLLDGSSSIGRSNFREVRSFLEGLVLPFSGAASAQGVRFA 80

Query: 82  FIVFSS--QATIILPLTGDRGKISKGLEDLKRV---SPVGETYIHEGLKLANEQIQKAGG 136
            + +S   +    L   G  G + + + +L      +  G   +H    +   Q+ + G 
Sbjct: 81  TVQYSDDPRTEFGLDALGSGGDVIRAIRELSYKGGNTRTGAAILHVADHVFLPQLARPGV 140

Query: 137 LKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADS-KEQ 195
            K   + I +TDGK   LV + A++     +  G  ++ VG+ + +  +L+R+A      
Sbjct: 141 PK---VCILITDGKSQDLVDTAAQR----LKGQGVKLFAVGIKNADPEELKRVASQPTSD 193

Query: 196 VFPVKGGFQALKGIINSILAQSCT 219
            F     F  L+ ++  +  + CT
Sbjct: 194 FFFFVNDFSILRTLLPLVSRRVCT 217


>gi|31542984 inter-alpha (globulin) inhibitor H4 [Homo sapiens]
          Length = 930

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 22/163 (13%)

Query: 44  DLYFVLDKSGSVANNWIEIYNFVQQLAERFV------SPEMRLSFIVFSSQATIILP--L 95
           ++ FV+DKSGS++   I      QQ  E  +      SP  + + IVFS++AT   P  +
Sbjct: 274 NVVFVIDKSGSMSGRKI------QQTREALIKILDDLSPRDQFNLIVFSTEATQWRPSLV 327

Query: 96  TGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLK-----TSSIIIALTDG- 149
                 ++K       +  +G T I++ + +A + +  +   +     + S+II LTDG 
Sbjct: 328 PASAENVNKARSFAAGIQALGGTNINDAMLMAVQLLDSSNQEERLPEGSVSLIILLTDGD 387

Query: 150 -KLDGLVPSYAEKEAKISRSLGASVYCVGV-LDFEQAQLERIA 190
             +    P   +   + + S   S++C+G   D   A LE++A
Sbjct: 388 PTVGETNPRSIQNNVREAVSGRYSLFCLGFGFDVSYAFLEKLA 430


>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
          Length = 638

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 350 KDPPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLE 409
           + PPPPP P+       PLP   W     +     G G I   + +     +   GA   
Sbjct: 505 QQPPPPPPPSSSMASSTPLP---WQQNTTTTTTSAGTGSIPPWQQQQA-AAAASPGAPQM 560

Query: 410 KAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQTKWYTPIKG 450
           +    +V +P   + P+ P  P P P   P       P +G
Sbjct: 561 QGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMIPPRG 601


>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
            sapiens]
          Length = 1899

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 44   DLYFVLDKSGSVAN-NWIEIYNFVQQLAERF--VSPE-MRLSFIVFSSQATIILPLT--G 97
            D+ F+ D S S+ + N+ ++  F+      F  +SP  +++SF+ +S +      L    
Sbjct: 1159 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYN 1218

Query: 98   DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQK-AGGLKTS--SIIIALTDGKLDGL 154
            D+      L++++     G T   + L    E++     G++ +   +++ +TDG+    
Sbjct: 1219 DKALALGALQNIRYRG--GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDE 1276

Query: 155  VPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIAD--SKEQVFPVKGGFQALKGIINS 212
            V    +K A + +  G SV+ VGV D +  +L  IA   S+  VF +   F++ + I ++
Sbjct: 1277 V----KKAALVIQQSGFSVFVVGVADVDYNELANIASKPSERHVF-IVDDFESFEKIEDN 1331

Query: 213  ILAQSC 218
            ++   C
Sbjct: 1332 LITFVC 1337



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 11/189 (5%)

Query: 40  RRAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLT 96
           R   D+  ++D S S+   N+  + +F+ ++ E F + P+ ++++   +S        L 
Sbjct: 31  RAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLN 90

Query: 97  GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQ-IQKAGGLKTSS--IIIALTDGKLDG 153
             R K S            G T     L    +Q  +   G++  +  I + +TDGK   
Sbjct: 91  AHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD 150

Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVK-GGFQALKGIINS 212
            V    E  +K  +  G  ++ +G+ + ++ +L+ IA   +         F++L  I++ 
Sbjct: 151 DV----EAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDD 206

Query: 213 ILAQSCTEI 221
           +    C  +
Sbjct: 207 LTINLCNSV 215


>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
            sapiens]
          Length = 3063

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 44   DLYFVLDKSGSVAN-NWIEIYNFVQQLAERF--VSPE-MRLSFIVFSSQATIILPLT--G 97
            D+ F+ D S S+ + N+ ++  F+      F  +SP  +++SF+ +S +      L    
Sbjct: 2323 DIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYN 2382

Query: 98   DRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQK-AGGLKTS--SIIIALTDGKLDGL 154
            D+      L++++     G T   + L    E++     G++ +   +++ +TDG+    
Sbjct: 2383 DKALALGALQNIRYRG--GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDE 2440

Query: 155  VPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIAD--SKEQVFPVKGGFQALKGIINS 212
            V    +K A + +  G SV+ VGV D +  +L  IA   S+  VF +   F++ + I ++
Sbjct: 2441 V----KKAALVIQQSGFSVFVVGVADVDYNELANIASKPSERHVF-IVDDFESFEKIEDN 2495

Query: 213  ILAQSC 218
            ++   C
Sbjct: 2496 LITFVC 2501



 Score = 36.2 bits (82), Expect = 0.069
 Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 21/190 (11%)

Query: 44  DLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLTGDRG 100
           D+ F++D S S+   N++++  F++ L + F +SP  +++S + +S        L     
Sbjct: 440 DIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLK---- 495

Query: 101 KISKGLEDLKRVSPV----GETYIHEGLKLANEQI---QKAGGLKTSSIIIALTDGKLDG 153
           K +K  + ++ ++      G T   + +    E+I    K        ++I +TDGK   
Sbjct: 496 KFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSD 555

Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIAD--SKEQVFPVKGGFQALKGIIN 211
              ++ +   K+ R+    ++ VGV D  +++LE IA   ++  VF V+  F A + I  
Sbjct: 556 ---AFRDPAIKL-RNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE-DFDAFQRISF 610

Query: 212 SILAQSCTEI 221
            +    C  I
Sbjct: 611 ELTQSICLRI 620



 Score = 32.3 bits (72), Expect = 1.0
 Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 11/189 (5%)

Query: 40   RRAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLT 96
            R   D+  ++D S S+   N+  + +F+ ++ E F + P+ ++++   +S        L 
Sbjct: 1195 RAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLN 1254

Query: 97   GDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQ-IQKAGGLKTSS--IIIALTDGKLDG 153
              R K S            G T     L    +Q  +   G++  +  I + +TDGK   
Sbjct: 1255 AHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQD 1314

Query: 154  LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQVFPVK-GGFQALKGIINS 212
             V    E  +K  +  G  ++ +G+ + ++ +L+ IA   +         F++L  I++ 
Sbjct: 1315 DV----EAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDD 1370

Query: 213  ILAQSCTEI 221
            +    C  +
Sbjct: 1371 LTINLCNSV 1379


>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
           sapiens]
          Length = 828

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 32/207 (15%)

Query: 21  LLVLSGPGGLLRAQEQP-----------SCRRAFD----LYFVLDKSGSVANNWIE---- 61
           +L+L G  G ++AQ+Q            +C    D    +YFVLD S SV          
Sbjct: 8   VLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQSPTDILL 67

Query: 62  ------IYNFVQQLAERFVSPEMRLSF----IVFSSQATIILPLTGDRGKISKGLEDLKR 111
                 +  F+ QL   F   ++ LS+    + FS Q  +  P   DR    K L+ +  
Sbjct: 68  FHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIKNLQGISS 127

Query: 112 VSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA 171
                 T+    L    EQI++     T    + +TDG + G      + +A+ +R  G 
Sbjct: 128 FRR--GTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERAREEGI 185

Query: 172 SVYCVGV-LDFEQAQLERIADSKEQVF 197
            ++ V    + ++  L  IA +  +++
Sbjct: 186 RLFAVAPNQNLKEQGLRDIASTPHELY 212


>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
           sapiens]
          Length = 918

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 32/207 (15%)

Query: 21  LLVLSGPGGLLRAQEQP-----------SCRRAFD----LYFVLDKSGSVANNWIE---- 61
           +L+L G  G ++AQ+Q            +C    D    +YFVLD S SV          
Sbjct: 8   VLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQSPTDILL 67

Query: 62  ------IYNFVQQLAERFVSPEMRLSF----IVFSSQATIILPLTGDRGKISKGLEDLKR 111
                 +  F+ QL   F   ++ LS+    + FS Q  +  P   DR    K L+ +  
Sbjct: 68  FHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIKNLQGISS 127

Query: 112 VSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA 171
                 T+    L    EQI++     T    + +TDG + G      + +A+ +R  G 
Sbjct: 128 FRR--GTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERAREEGI 185

Query: 172 SVYCVGV-LDFEQAQLERIADSKEQVF 197
            ++ V    + ++  L  IA +  +++
Sbjct: 186 RLFAVAPNQNLKEQGLRDIASTPHELY 212


>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
           sapiens]
          Length = 1019

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 32/207 (15%)

Query: 21  LLVLSGPGGLLRAQEQP-----------SCRRAFD----LYFVLDKSGSVANNWIE---- 61
           +L+L G  G ++AQ+Q            +C    D    +YFVLD S SV          
Sbjct: 8   VLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQSPTDILL 67

Query: 62  ------IYNFVQQLAERFVSPEMRLSF----IVFSSQATIILPLTGDRGKISKGLEDLKR 111
                 +  F+ QL   F   ++ LS+    + FS Q  +  P   DR    K L+ +  
Sbjct: 68  FHMKQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFIKNLQGISS 127

Query: 112 VSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA 171
                 T+    L    EQI++     T    + +TDG + G      + +A+ +R  G 
Sbjct: 128 FRR--GTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERAREEGI 185

Query: 172 SVYCVGV-LDFEQAQLERIADSKEQVF 197
            ++ V    + ++  L  IA +  +++
Sbjct: 186 RLFAVAPNQNLKEQGLRDIASTPHELY 212


>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 350 KDPPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLE 409
           + PPPPP P+       PLP   W     +     G G I   + +     +   GA   
Sbjct: 505 QQPPPPPPPSSSMASSTPLP---WQQNTTTTTTSAGTGSIPPWQQQQA-AAAASPGAPQM 560

Query: 410 KAKNAVVKIPEETEEPIRPRPPRPKPTHQP 439
           +    +V +P   + P+ P  P P P   P
Sbjct: 561 QGNPTMVPLPPGVQPPLPPGAPPPPPPPPP 590


>gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]
          Length = 288

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 14 WLFPGLWLLVLSGPGGLLRAQEQPSC 39
          W+ P LWLL+L GP   L+ QE PSC
Sbjct: 5  WILPSLWLLLLGGP-ACLKTQEHPSC 29


>gi|27754776 ficolin 3 isoform 1 precursor [Homo sapiens]
          Length = 299

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 14 WLFPGLWLLVLSGPGGLLRAQEQPSC 39
          W+ P LWLL+L GP   L+ QE PSC
Sbjct: 5  WILPSLWLLLLGGP-ACLKTQEHPSC 29


>gi|11321565 matrilin 3 precursor [Homo sapiens]
          Length = 486

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 6   SPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCR-RAFDLYFVLDKSGSVAN-NWIEIY 63
           SP R P      G      S PG   RA+    C+ R  DL F++D S SV    + ++ 
Sbjct: 47  SPGRRPSPAAPDGAPASGTSEPG---RARGAGVCKSRPLDLVFIIDSSRSVRPLEFTKVK 103

Query: 64  NFVQQLAERF-VSP-EMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIH 121
            FV ++ +   + P + R++ + ++S   I   L     K S   + + R++P+  T   
Sbjct: 104 TFVSRIIDTLDIGPADTRVAVVNYASTVKIEFQLQAYTDKQSLK-QAVGRITPLS-TGTM 161

Query: 122 EGLKLANEQIQ----KAGGLKTSS----IIIALTDGKLDGLVPSYAEKEAKISRSLGASV 173
            GL +     +    +AG  + SS    + I +TDG+    V   A +    +++ G  +
Sbjct: 162 SGLAIQTAMDEAFTVEAGAREPSSNIPKVAIIVTDGRPQDQVNEVAAR----AQASGIEL 217

Query: 174 YCVGVLDFEQAQLERIADS--KEQVFPVK 200
           Y VGV   + A L+ +A    +E VF V+
Sbjct: 218 YAVGVDRADMASLKMMASEPLEEHVFYVE 246


>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
          Length = 1284

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 45/185 (24%), Positives = 90/185 (48%), Gaps = 18/185 (9%)

Query: 44  DLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSPE-MRLSFIVFSSQATIILPLTGDRG 100
           D+ F++D S S+ ++  + + +F+  +   F + P+ +++    +S  A     L     
Sbjct: 179 DMVFLVDGSWSIGHSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLST 238

Query: 101 KISKGLEDLKRVSPVGETYIHEGLKLAN---EQIQKAGGLK--TSSIIIALTDGKLDGLV 155
           K  + L  ++R+   G      GL L +   + +Q A GL+   + ++I +TDGK    V
Sbjct: 239 K-EQVLAAVRRLRYKGGNTF-TGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDV 296

Query: 156 PSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSKEQ--VFPVKGGFQ--ALKGIIN 211
            +     A++ + LG +V+ VGV + ++A+L  +A       V  V    Q  AL G+++
Sbjct: 297 HT----AARVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHSVLDFLQLGALAGLLS 352

Query: 212 SILAQ 216
            ++ Q
Sbjct: 353 RLICQ 357


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
           sapiens]
          Length = 1747

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 33/104 (31%), Positives = 41/104 (39%), Gaps = 22/104 (21%)

Query: 352 PPPPPAP------APKEEEEEPLPTKKWPTVDASYYGGRGVGGIKRMEVRW--GDKGSTE 403
           PPPPPAP       P      P P + + TV +S+  G        +E R   G  G  E
Sbjct: 837 PPPPPAPYYFDSGPPPAFSPPPPPGRAYDTVRSSFKPG--------LEARLGAGAAGLYE 888

Query: 404 EGARL------EKAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQ 441
            GA L      E+ K A   I  +   P     PRP P   PP+
Sbjct: 889 PGAALGPLPYPERQKRARSMIILQDSAPESGDAPRPPPAATPPE 932


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 32/107 (29%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 341 WPLCCKVVIKDPPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVG-----GIKRMEVR 395
           WP     V K   PPP   P +EE   L   +     A   G  G G        R E R
Sbjct: 866 WPPGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETR 925

Query: 396 WGDK-GSTEEGARLEKAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQ 441
           WG + GS+  G   E+        P     PI+  PP  K    PP+
Sbjct: 926 WGPRPGSSRRGIPPEEP-----GAPPRRAGPIKKPPPPTKVEELPPK 967



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 24/105 (22%)

Query: 352 PPPPPAPAPKEEEEEPL---PTKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGA-- 406
           PPP  AP P+ E EEP    P +  PT         GV     +    G   ST  G+  
Sbjct: 534 PPPASAPTPETEPEEPAQAPPAQSTPT--------PGVAAAPTLVSGGGSTSSTSSGSFE 585

Query: 407 ----RLEKAKNAVVKIPEETEEPIRPRPPR--PK-----PTHQPP 440
                 +       + PEE   P  P  P+  PK     PT QPP
Sbjct: 586 ASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPP 630


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 35.8 bits (81), Expect = 0.091
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 352  PPPPPAPAPKEEEEEPLP--TKKWPTVDASYYGGRGVGGIKRMEVRWGDKGSTEEGARLE 409
            PPPPP P P E  + P      +WP+ +A   G RG     R EV       TEE   L 
Sbjct: 1547 PPPPPPPPPVEPTKLPFKELDNQWPS-EAIPPGPRG-----RDEV-------TEEYMELA 1593

Query: 410  KAKNAVVKIPEETEEPIRPRPPRPKPTHQPPQ 441
            K++    + P++  E +   PP   P   PPQ
Sbjct: 1594 KSRGPWRRPPKKRHEDL--VPPAGSPELSPPQ 1623


>gi|150036262 chloride channel accessory 4 [Homo sapiens]
          Length = 919

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 15/112 (13%)

Query: 48  VLDKSGSVANNWIEIYNFVQQLAERFVSPEMR----LSFIVFSSQATIILPL-----TGD 98
           VLDKSGS+     +  N + Q A+ F+   +     +  + F S ATI+  L     + +
Sbjct: 310 VLDKSGSMGGK--DRLNRMNQAAKHFLLQTVENGSWVGMVHFDSTATIVNKLIQIKSSDE 367

Query: 99  RGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGK 150
           R  +  GL       P+G T I  G+K A + I +       S ++ LTDG+
Sbjct: 368 RNTLMAGLPTY----PLGGTSICSGIKYAFQVIGELHSQLDGSEVLLLTDGE 415


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 352 PPPPPAPAPKEEEEEPLPTKKWPTVDASYYGGRGVGGIK------RMEVRWGDKGSTEEG 405
           P PPP P P     +P  +   P+  AS   G    G K        E  +  +G+   G
Sbjct: 780 PAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGG 839

Query: 406 ARLEKAKNAVVKIPEETEEPIRPRPPRPKPTHQP 439
              E+      + P E  +P  PRPP P P   P
Sbjct: 840 GAAEEEGVPRPRAPPEPPDPGAPRPP-PDPGPLP 872


>gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]
          Length = 496

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 21/189 (11%)

Query: 19  LWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERF-VSP 76
           L L  L  PG   +++      R  DL FV+D S SV     E +  F+ Q+ E   V P
Sbjct: 16  LLLQALCSPGLAPQSRGHLCRTRPTDLVFVVDSSRSVRPVEFEKVKVFLSQVIESLDVGP 75

Query: 77  EM-RLSFIVFSSQATIILPLTGDRGKISKG--LEDLKRVSPVGETYIHEGLKLANEQIQK 133
              R+  + ++S       L   R  +SK   L+ ++R+ P+  T    GL +     + 
Sbjct: 76  NATRVGMVNYASTVKQEFSL---RAHVSKAALLQAVRRIQPLS-TGTMTGLAIQFAITKA 131

Query: 134 AGGLK--------TSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQ 185
            G  +         S ++I +TDG+    V   + +    +R+ G  ++ +GV   ++A 
Sbjct: 132 FGDAEGGRSRSPDISKVVIVVTDGRPQDSVQDVSAR----ARASGVELFAIGVGSVDKAT 187

Query: 186 LERIADSKE 194
           L +IA   +
Sbjct: 188 LRQIASEPQ 196



 Score = 29.3 bits (64), Expect = 8.5
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 42  AFDLYFVLDKSGSVA-NNWIEIYNFVQQLAERF-VSPEM-RLSFIVFSSQATIILPLTGD 98
           A DL F++D S SV   N+  +  F+ Q+ +   VS ++ ++  + +SS      PL   
Sbjct: 273 ATDLVFLIDGSKSVRPENFELVKKFISQIVDTLDVSDKLAQVGLVQYSSSVRQEFPL--G 330

Query: 99  RGKISKGLEDLKRVSPVGE--TYIHEGLK-LANEQIQKAGGLKTSS--IIIALTDGKLDG 153
           R    K ++   R     E  T     LK L +     + G +  +  + I  TDG+   
Sbjct: 331 RFHTKKDIKAAVRNMSYMEKGTMTGAALKYLIDNSFTVSSGARPGAQKVGIVFTDGRSQ- 389

Query: 154 LVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIA 190
               Y    AK ++ LG  ++ VGV +  + +L  IA
Sbjct: 390 ---DYINDAAKKAKDLGFKMFAVGVGNAVEDELREIA 423


>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
          Length = 1028

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 33/176 (18%)

Query: 33  AQEQPSCRRAF-------DLYFVLDKSGSVANNWIEIY------------NFVQQLAERF 73
           AQ++P   RA        DL+FVLD S SVA   ++ Y             F+  L +R+
Sbjct: 19  AQDEPETPRAVAFQDCPVDLFFVLDTSESVALR-LKPYGALVDKVKSFTKRFIDNLRDRY 77

Query: 74  VSPEMRLSF----IVFSSQATIILPLT---GDRGKISKGLEDLKRVSPVGETYIHEGLKL 126
              +  L +    + +S +  II  LT   G R  +   ++ +K       TY    +K 
Sbjct: 78  YRCDRNLVWNAGALHYSDEVEIIQGLTRMPGGRDALKSSVDAVKYFGK--GTYTDCAIKK 135

Query: 127 ANEQIQKAGG-LKTSSIIIALTDG-KLDGLVPSYAEKEAKI--SRSLGASVYCVGV 178
             EQ+   G  LK +  +I +TDG  L+G        E  +  ++ LG  V+ V +
Sbjct: 136 GLEQLLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAKHLGVKVFSVAI 191


>gi|123701326 zinc finger protein 831 [Homo sapiens]
          Length = 1677

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 355 PPAPAPKEEEEEPLPTKKWPTVDASYYGG-RGVGGIK------RMEVRWGDKGSTEEGAR 407
           PPAP P +  +   P   WP  D    GG RGVG ++      +  +RW  +GS E+   
Sbjct: 762 PPAPGPLKGGDVEAPRPVWP--DPKLEGGARGVGDVQETCLWAQTVLRWPSRGSGEDKLP 819

Query: 408 LEKAKNAVVKIPE-ETEEPIRPRPP 431
            E+ K  V  +   +  EP+    P
Sbjct: 820 SERKKLKVEDLHSWKQPEPVSAETP 844


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,450,611
Number of Sequences: 37866
Number of extensions: 1114644
Number of successful extensions: 10722
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 9882
Number of HSP's gapped (non-prelim): 772
length of query: 489
length of database: 18,247,518
effective HSP length: 106
effective length of query: 383
effective length of database: 14,233,722
effective search space: 5451515526
effective search space used: 5451515526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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