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Search of human proteins with 11545811
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11545811 hepatocellular carcinoma antigen gene 520 [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11545811 hepatocellular carcinoma antigen gene 520 [Homo sapi... 389 e-108
gi|6005731 calcium binding protein P22 [Homo sapiens] 242 2e-64
gi|4506025 protein phosphatase 3, regulatory subunit B, alpha is... 113 1e-25
gi|22212896 protein phosphatase 3 regulatory subunit B, beta iso... 110 1e-24
gi|95007022 tescalcin [Homo sapiens] 80 8e-16
gi|5453708 DNA-dependent protein kinase catalytic subunit-intera... 68 4e-12
gi|58218968 calmodulin 3 [Homo sapiens] 56 2e-08
gi|4502549 calmodulin 2 [Homo sapiens] 56 2e-08
gi|5901912 calmodulin 1 [Homo sapiens] 56 2e-08
gi|163644313 calcium and integrin binding 1 [Homo sapiens] 56 2e-08
gi|13929434 calcium binding protein 1 isoform 2 [Homo sapiens] 54 1e-07
gi|11067753 calcium binding protein 5 [Homo sapiens] 53 2e-07
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 52 3e-07
gi|13929432 calcium binding protein 1 isoform 1 [Homo sapiens] 52 3e-07
gi|4885111 calmodulin-like 3 [Homo sapiens] 52 4e-07
gi|110611180 calcium binding protein 2 isoform 2 [Homo sapiens] 51 7e-07
gi|110611178 calcium binding protein 2 isoform 1 [Homo sapiens] 51 7e-07
gi|4507617 fast skeletal muscle troponin C [Homo sapiens] 50 9e-07
gi|71274156 calcium and integrin binding family member 4 [Homo s... 50 1e-06
gi|4757902 caltractin [Homo sapiens] 49 2e-06
gi|192447423 frequenin homolog isoform 2 [Homo sapiens] 48 5e-06
gi|17738308 frequenin homolog isoform 1 [Homo sapiens] 48 5e-06
gi|21624641 calcium binding protein 4 [Homo sapiens] 47 8e-06
gi|218751877 EF-hand calcium binding domain 1 isoform b [Homo sa... 47 8e-06
gi|13375787 EF-hand calcium binding domain 1 isoform a [Homo sap... 47 8e-06
gi|7705419 hippocalcin-like protein 4 [Homo sapiens] 47 8e-06
gi|4757974 centrin 1 [Homo sapiens] 47 1e-05
gi|16930817 DNA-dependent protein kinase catalytic subunit-inter... 47 1e-05
gi|21361559 visinin-like 1 [Homo sapiens] 46 2e-05
gi|27886676 Kv channel interacting protein 2 isoform 5 [Homo sap... 46 2e-05
>gi|11545811 hepatocellular carcinoma antigen gene 520 [Homo
sapiens]
Length = 196
Score = 389 bits (998), Expect = e-108
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN 60
MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN
Sbjct: 1 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN 60
Query: 61 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF 120
PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF
Sbjct: 61 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF 120
Query: 121 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS 180
QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS
Sbjct: 121 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS 180
Query: 181 LEKMDVEQKMSIRILK 196
LEKMDVEQKMSIRILK
Sbjct: 181 LEKMDVEQKMSIRILK 196
>gi|6005731 calcium binding protein P22 [Homo sapiens]
Length = 195
Score = 242 bits (617), Expect = 2e-64
Identities = 119/195 (61%), Positives = 155/195 (79%), Gaps = 1/195 (0%)
Query: 1 MGSRSSHAAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVN 60
MGSR+S + + I++ETGFS + + RL+ RF +LD+ + G LSR D Q+I LA+N
Sbjct: 1 MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAIN 60
Query: 61 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAF 120
PLGDRII +FFP+G +V+F GF+R LAHFRP+ED + +++D PEPLNSR NKLH+AF
Sbjct: 61 PLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNE-KSKDVNGPEPLNSRSNKLHFAF 119
Query: 121 QLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS 180
+LYDLD+D KISR E+LQVLR+MVGV +++EQL +IADRT+QEAD+DGD A+SF EF K
Sbjct: 120 RLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 179
Query: 181 LEKMDVEQKMSIRIL 195
LEK+DVEQKMSIR L
Sbjct: 180 LEKVDVEQKMSIRFL 194
>gi|4506025 protein phosphatase 3, regulatory subunit B, alpha
isoform 1 [Homo sapiens]
Length = 170
Score = 113 bits (282), Expect = 1e-25
Identities = 61/172 (35%), Positives = 95/172 (55%), Gaps = 16/172 (9%)
Query: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPG 82
F + RL RF+ LD + G LS + + L NPL R+I+ F DG+ VDF
Sbjct: 15 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKE 74
Query: 83 FVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRL 142
F+ ++ F D++ KL +AF++YD+D+DG IS E+ QVL++
Sbjct: 75 FIEGVSQFSVKGDKE----------------QKLRFAFRIYDMDKDGYISNGELFQVLKM 118
Query: 143 MVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKMDVEQKMSIRI 194
MVG + + QL+ I D+T+ AD+DGDG +SF EF + +D+ +KM + +
Sbjct: 119 MVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLDIHKKMVVDV 170
>gi|22212896 protein phosphatase 3 regulatory subunit B, beta
isoform [Homo sapiens]
Length = 173
Score = 110 bits (274), Expect = 1e-24
Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 16/168 (9%)
Query: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPG 82
F + RL RF+ LD +K G LS + + L NPL R+I+ F DG VDF
Sbjct: 18 FDNDEIKRLGRRFKKLDLDKSGSLSVEEFMSLPELRHNPLVRRVIDVFDTDGDGEVDFKE 77
Query: 83 FVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRL 142
F+ + F DE+ KL +AF +YD+D+DG IS E+ QVL++
Sbjct: 78 FILGTSQFSVKGDEE----------------QKLRFAFSIYDMDKDGYISNGELFQVLKM 121
Query: 143 MVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKMDVEQKM 190
MVG +T+ QL+ + D+T+ D+DGDG +SF EF+ + +++ +K+
Sbjct: 122 MVGNNLTDWQLQQLVDKTIIILDKDGDGKISFEEFSAVVRDLEIHKKL 169
>gi|95007022 tescalcin [Homo sapiens]
Length = 267
Score = 80.5 bits (197), Expect = 8e-16
Identities = 56/197 (28%), Positives = 102/197 (51%), Gaps = 29/197 (14%)
Query: 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFF-------- 71
+TGFS + +LH RF+ L ++ + + + + L +NP+ +I+ +FF
Sbjct: 70 KTGFSSDQIEQLHRRFKQLSGDQPT-IRKENFNNVPDLELNPIRSKIVRAFFDNRNLRKG 128
Query: 72 PDG-SQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGK 130
P G + ++F F+ ++++FRP++ T D ++ E SR+ KL + F +YD D DG+
Sbjct: 129 PSGLADEINFEDFLTIMSYFRPIDT----TMDEEQVEL--SRKEKLRFLFHMYDSDSDGR 182
Query: 131 ISRHEMLQVLR--LMVGVQVTEEQLENIADRTVQEA----------DEDGDGAVSFVEFT 178
I+ E V+ L + +E +IAD + EA D+ +G ++F +F
Sbjct: 183 ITLEEYRNVVEELLSGNPHIEKESARSIADGAMMEAASVCMGQMEPDQVYEG-ITFEDFL 241
Query: 179 KSLEKMDVEQKMSIRIL 195
K + +D+E KM +R L
Sbjct: 242 KIWQGIDIETKMHVRFL 258
>gi|5453708 DNA-dependent protein kinase catalytic
subunit-interacting protein 2 [Homo sapiens]
Length = 187
Score = 68.2 bits (165), Expect = 4e-12
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 31/181 (17%)
Query: 15 DSIRRETGFSQASLLRLHHRFRALDRN------KKGYLSRMDLQ---QIGALAVNPLGDR 65
D+ + T F++ +L+LH RF L N +K + + + Q+ L NP +R
Sbjct: 14 DNYQDCTFFNKKDILKLHSRFYELAPNLVPMDYRKSPIVHVPMSLIIQMPELRENPFKER 73
Query: 66 IIESFFPDGSQRVDFPGFV---RVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQL 122
I+ +F DG + F FV VL P R K +YAF++
Sbjct: 74 IVAAFSEDGEGNLTFNDFVDMFSVLCESAP-------------------RELKANYAFKI 114
Query: 123 YDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182
YD + D I + ++ L + ++ EE++ + D+ ++EAD DGDG + F +F +
Sbjct: 115 YDFNTDNFICKEDLELTLARLTKSELDEEEVVLVCDKVIEEADLDGDGKLGFADFEDMIA 174
Query: 183 K 183
K
Sbjct: 175 K 175
>gi|58218968 calmodulin 3 [Homo sapiens]
Length = 149
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 25/162 (15%)
Query: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPLGDRI---IESFFPDGSQRVD 79
++ + F D++ G ++ +L + +L NP + I DG+ +D
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 80 FPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV 139
FP F+ ++A R ++D D+E + + AF+++D D +G IS E+ V
Sbjct: 66 FPEFLTMMA--RKMKDTDSEEE--------------IREAFRVFDKDGNGYISAAELRHV 109
Query: 140 LRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSL 181
+ + G ++T+E++ D ++EAD DGDG V++ EF + +
Sbjct: 110 MTNL-GEKLTDEEV----DEMIREADIDGDGQVNYEEFVQMM 146
>gi|4502549 calmodulin 2 [Homo sapiens]
Length = 149
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 25/162 (15%)
Query: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPLGDRI---IESFFPDGSQRVD 79
++ + F D++ G ++ +L + +L NP + I DG+ +D
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 80 FPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV 139
FP F+ ++A R ++D D+E + + AF+++D D +G IS E+ V
Sbjct: 66 FPEFLTMMA--RKMKDTDSEEE--------------IREAFRVFDKDGNGYISAAELRHV 109
Query: 140 LRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSL 181
+ + G ++T+E++ D ++EAD DGDG V++ EF + +
Sbjct: 110 MTNL-GEKLTDEEV----DEMIREADIDGDGQVNYEEFVQMM 146
>gi|5901912 calmodulin 1 [Homo sapiens]
Length = 149
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 25/162 (15%)
Query: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVNPLGDRI---IESFFPDGSQRVD 79
++ + F D++ G ++ +L + +L NP + I DG+ +D
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 80 FPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV 139
FP F+ ++A R ++D D+E + + AF+++D D +G IS E+ V
Sbjct: 66 FPEFLTMMA--RKMKDTDSEEE--------------IREAFRVFDKDGNGYISAAELRHV 109
Query: 140 LRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSL 181
+ + G ++T+E++ D ++EAD DGDG V++ EF + +
Sbjct: 110 MTNL-GEKLTDEEV----DEMIREADIDGDGQVNYEEFVQMM 146
>gi|163644313 calcium and integrin binding 1 [Homo sapiens]
Length = 191
Score = 56.2 bits (134), Expect = 2e-08
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 29/170 (17%)
Query: 21 TGFSQASLLRLHHRF--------RALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFP 72
T ++ +L H RF R+++ + + + + + L NP +RI F
Sbjct: 20 TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFST 79
Query: 73 DGSQ-RVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKI 131
++ + F F+ +L+ F DT T D K HYAF+++D D DG +
Sbjct: 80 SPAKDSLSFEDFLDLLSVF-----SDTATPDIKS-----------HYAFRIFDFDDDGTL 123
Query: 132 SRHEMLQVLRLMVG----VQVTEEQLENIADRTVQEADEDGDGAVSFVEF 177
+R ++ +++ + G +++ +++ + D ++E+D D DG ++ EF
Sbjct: 124 NREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEF 173
>gi|13929434 calcium binding protein 1 isoform 2 [Homo sapiens]
Length = 167
Score = 53.5 bits (127), Expect = 1e-07
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 18 RRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRIIE---SFFPD 73
R++ + L FR D++K GY++ DL + + P +IE +
Sbjct: 14 RKDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMN 73
Query: 74 GSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISR 133
VDF FV ++ E D +L AF+ +D + DG+IS
Sbjct: 74 LGGHVDFDDFVELMGPKLLAETADMIGV------------KELRDAFREFDTNGDGEIST 121
Query: 134 HEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
E+ + +R ++G QV +E I +++ D +GDG V F EF + + +
Sbjct: 122 SELREAMRKLLGHQVGHRDIEEI----IRDVDLNGDGRVDFEEFVRMMSR 167
>gi|11067753 calcium binding protein 5 [Homo sapiens]
Length = 173
Score = 52.8 bits (125), Expect = 2e-07
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 18 RRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQR 77
+RE Q + L F D+++ G++S DL + + +G + P +
Sbjct: 20 QRERPLGQDEIEELREAFLEFDKDRDGFISCKDLGNL----MRTMG------YMPTEMEL 69
Query: 78 VDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRN--KLHYAFQLYDLDRDGKISRHE 135
++ +R+ R D+ E PK ++ AF+ +D + DG+I+ E
Sbjct: 70 IELGQQIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLVE 129
Query: 136 MLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
+ Q ++ ++G ++T ++ + V+EAD +GDG V F EF K + +
Sbjct: 130 LQQAMQRLLGERLTPREISEV----VREADVNGDGTVDFEEFVKMMSR 173
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 52.0 bits (123), Expect = 3e-07
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 31 LHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRIIE---SFFPDGSQRVDFPGFVRV 86
L FR D++K GY++ DL + + P +IE + VDF FV +
Sbjct: 230 LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVEL 289
Query: 87 LAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGV 146
+ E D +L AF+ +D + DG+IS E+ + +R ++G
Sbjct: 290 MGPKLLAETADMIGV------------KELRDAFREFDTNGDGEISTSELREAMRKLLGH 337
Query: 147 QVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
QV +E I +++ D +GDG V F EF + + +
Sbjct: 338 QVGHRDIEEI----IRDVDLNGDGRVDFEEFVRMMSR 370
Score = 27.7 bits (60), Expect = 6.5
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 21/144 (14%)
Query: 36 RALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVED 95
R D ++G + L+ G+L GD + P + D L RP+
Sbjct: 166 RGRDGEERGLSPALGLR--GSLRARGRGDSV-----PAAASEAD-----PFLHRLRPMLS 213
Query: 96 EDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLEN 155
+PE + R AF+ +D D+DG I+ ++ +R M G TE +L
Sbjct: 214 SAFGQDRSLRPEEIEELRE----AFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMELIE 268
Query: 156 IADRTVQEADEDGDGAVSFVEFTK 179
++ Q+ + + G V F +F +
Sbjct: 269 LS----QQINMNLGGHVDFDDFVE 288
>gi|13929432 calcium binding protein 1 isoform 1 [Homo sapiens]
Length = 227
Score = 52.0 bits (123), Expect = 3e-07
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 31 LHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRIIE---SFFPDGSQRVDFPGFVRV 86
L FR D++K GY++ DL + + P +IE + VDF FV +
Sbjct: 87 LREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVEL 146
Query: 87 LAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGV 146
+ E D +L AF+ +D + DG+IS E+ + +R ++G
Sbjct: 147 MGPKLLAETADMIGV------------KELRDAFREFDTNGDGEISTSELREAMRKLLGH 194
Query: 147 QVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
QV +E I +++ D +GDG V F EF + + +
Sbjct: 195 QVGHRDIEEI----IRDVDLNGDGRVDFEEFVRMMSR 227
Score = 27.7 bits (60), Expect = 6.5
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 96 EDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLEN 155
E+ + +PE + R AF+ +D D+DG I+ ++ +R M G TE +L
Sbjct: 71 ENRQPDRSLRPEEIEELRE----AFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMELIE 125
Query: 156 IADRTVQEADEDGDGAVSFVEFTK 179
++ Q+ + + G V F +F +
Sbjct: 126 LS----QQINMNLGGHVDFDDFVE 145
>gi|4885111 calmodulin-like 3 [Homo sapiens]
Length = 149
Score = 51.6 bits (122), Expect = 4e-07
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 25/151 (16%)
Query: 35 FRALDRNKKGYLSRMDLQQI-GALAVNPLGDRI---IESFFPDGSQRVDFPGFVRVLAHF 90
F D++ G ++ +L + +L NP + + DG+ VDFP F+ ++A
Sbjct: 17 FSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMA-- 74
Query: 91 RPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTE 150
R ++D D E + + AF+++D D +G +S E+ V+ + G ++++
Sbjct: 75 RKMKDTDNEEE--------------IREAFRVFDKDGNGFVSAAELRHVMTRL-GEKLSD 119
Query: 151 EQLENIADRTVQEADEDGDGAVSFVEFTKSL 181
E++ D ++ AD DGDG V++ EF + L
Sbjct: 120 EEV----DEMIRAADTDGDGQVNYEEFVRVL 146
Score = 40.4 bits (93), Expect = 0.001
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 119 AFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFT 178
AF L+D D DG I+ E+ V+R +G TE +L ++ + E D DG+G V F EF
Sbjct: 16 AFSLFDKDGDGCITTRELGTVMR-SLGQNPTEAELRDM----MSEIDRDGNGTVDFPEFL 70
Query: 179 KSLEK--MDVEQKMSIR 193
+ + D + + IR
Sbjct: 71 GMMARKMKDTDNEEEIR 87
>gi|110611180 calcium binding protein 2 isoform 2 [Homo sapiens]
Length = 163
Score = 50.8 bits (120), Expect = 7e-07
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 35 FRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPV 93
F+ DR++ GY+ +L + L P +IE +VDF FV ++
Sbjct: 30 FQEFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLA 89
Query: 94 EDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQL 153
E D + R +L AF+ +D + DG+IS E+ L+ ++G ++++ ++
Sbjct: 90 ETADM----------IGVR--ELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREV 137
Query: 154 ENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
+ I +Q+ D +GDG V F EF + + +
Sbjct: 138 DEI----LQDVDLNGDGLVDFEEFVRMMSR 163
Score = 30.8 bits (68), Expect = 0.77
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 103 PKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQ 162
PK E +L AFQ +D DRDG I E+ +R + G TE +L ++
Sbjct: 13 PKDRELRPEEIEELQVAFQEFDRDRDGYIGCRELGACMRTL-GYMPTEMEL-------IE 64
Query: 163 EADEDGDGAVSFVEFTK 179
+ + G V F +F +
Sbjct: 65 ISQQISGGKVDFEDFVE 81
>gi|110611178 calcium binding protein 2 isoform 1 [Homo sapiens]
Length = 220
Score = 50.8 bits (120), Expect = 7e-07
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 35 FRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPV 93
F+ DR++ GY+ +L + L P +IE +VDF FV ++
Sbjct: 87 FQEFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQISGGKVDFEDFVELMGPKLLA 146
Query: 94 EDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQL 153
E D + R +L AF+ +D + DG+IS E+ L+ ++G ++++ ++
Sbjct: 147 ETADM----------IGVR--ELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREV 194
Query: 154 ENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
+ I +Q+ D +GDG V F EF + + +
Sbjct: 195 DEI----LQDVDLNGDGLVDFEEFVRMMSR 220
Score = 29.6 bits (65), Expect = 1.7
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 98 TETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIA 157
T+ +PE + +L AFQ +D DRDG I E+ +R + G TE +L
Sbjct: 69 TQLDRELRPEEIE----ELQVAFQEFDRDRDGYIGCRELGACMRTL-GYMPTEMEL---- 119
Query: 158 DRTVQEADEDGDGAVSFVEFTK 179
++ + + G V F +F +
Sbjct: 120 ---IEISQQISGGKVDFEDFVE 138
>gi|4507617 fast skeletal muscle troponin C [Homo sapiens]
Length = 160
Score = 50.4 bits (119), Expect = 9e-07
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 64 DRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLY 123
D IIE DGS +DF F+ ++ K + +L F+++
Sbjct: 57 DAIIEEVDEDGSGTIDFEEFLVMMVR-------------QMKEDAKGKSEEELAECFRIF 103
Query: 124 DLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182
D + DG I E+ ++ R G VT+E++E++ +++ D++ DG + F EF K +E
Sbjct: 104 DRNADGYIDPEELAEIFRAS-GEHVTDEEIESL----MKDGDKNNDGRIDFDEFLKMME 157
Score = 44.3 bits (103), Expect = 7e-05
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 119 AFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEF 177
AF ++D D G IS E+ V+R M+G T+E+L+ I ++E DEDG G + F EF
Sbjct: 23 AFDMFDADGGGDISVKELGTVMR-MLGQTPTKEELDAI----IEEVDEDGSGTIDFEEF 76
Score = 35.0 bits (79), Expect = 0.041
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 35 FRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQ----RVDFPGFVRVL 87
FR DRN GY+ +L +I + + D IES DG + R+DF F++++
Sbjct: 100 FRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156
>gi|71274156 calcium and integrin binding family member 4 [Homo
sapiens]
Length = 185
Score = 50.1 bits (118), Expect = 1e-06
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 21 TGFSQASLLRLHHRFRALDRNKKGY----LSRMDLQQIGALAVNPLGDRIIESFFPDGSQ 76
T ++ +L +H F L K Y L+ + + AL VNP DRI F G
Sbjct: 21 TFLTRNEILCIHDTFLKLCPPGKYYKEATLTMDQVSSLPALRVNPFRDRICRVFSHKGM- 79
Query: 77 RVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEM 136
F + + + F +E P K+ YAF++YD + +G I ++
Sbjct: 80 -FSFEDVLGMASVF-------SEQACPSL---------KIEYAFRIYDFNENGFIDEEDL 122
Query: 137 LQV-LRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
++ LRL+ ++E+ L ++ + + E+D D D +SF EF ++ K
Sbjct: 123 QRIILRLLNSDDMSEDLLMDLTNHVLSESDLDNDNMLSFSEFEHAMAK 170
Score = 28.1 bits (61), Expect = 5.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 6 SHAAVIPDGDSIRRETGFSQASL--LRLHHRFRALDRNKKGYLSRMDLQQI 54
SH + D + + FS+ + L++ + FR D N+ G++ DLQ+I
Sbjct: 75 SHKGMFSFEDVLGMASVFSEQACPSLKIEYAFRIYDFNENGFIDEEDLQRI 125
>gi|4757902 caltractin [Homo sapiens]
Length = 172
Score = 49.3 bits (116), Expect = 2e-06
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 25/157 (15%)
Query: 31 LHHRFRALDRNKKGYLSRMDLQ-QIGALAVNPLGDRI---IESFFPDGSQRVDFPGFVRV 86
+ F D + G + +L+ + AL P + I I +G+ +++F F+ V
Sbjct: 33 IREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTV 92
Query: 87 LAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGV 146
+ + + ++DT+ + K AF+L+D D GKIS + +V + + G
Sbjct: 93 MT--QKMSEKDTKEEILK--------------AFKLFDDDETGKISFKNLKRVAKEL-GE 135
Query: 147 QVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
+T+E+L+ + D EAD DGDG VS EF + ++K
Sbjct: 136 NLTDEELQEMID----EADRDGDGEVSEQEFLRIMKK 168
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 105 KPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEA 164
KPE ++ ++ AF L+D D G I E+ +R + G + +E+++ + + E
Sbjct: 22 KPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRAL-GFEPKKEEIK----KMISEI 76
Query: 165 DEDGDGAVSFVEFTKSLEKMDVEQKMSIRILK 196
D++G G ++F +F + + E+ ILK
Sbjct: 77 DKEGTGKMNFGDFLTVMTQKMSEKDTKEEILK 108
>gi|192447423 frequenin homolog isoform 2 [Homo sapiens]
Length = 172
Score = 48.1 bits (113), Expect = 5e-06
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 43 KGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFV-RVLAHFRPVEDEDTETQ 101
KG++ Q+ A +I + FFP G F FV V + E +E
Sbjct: 14 KGFIKDCPSGQLDAAGFQ----KIYKQFFPFGDP-TKFATFVFNVFDENKDGRIEFSEFI 68
Query: 102 DPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV---LRLMVG--VQVTEEQ--LE 154
+ KL +AF+LYDLD DG I+R+EML + + MVG V++ EE+ E
Sbjct: 69 QALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPE 128
Query: 155 NIADRTVQEADEDGDGAVSFVEF 177
DR D++ DG ++ EF
Sbjct: 129 KRVDRIFAMMDKNADGKLTLQEF 151
>gi|17738308 frequenin homolog isoform 1 [Homo sapiens]
Length = 190
Score = 48.1 bits (113), Expect = 5e-06
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 43 KGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFV-RVLAHFRPVEDEDTETQ 101
KG++ Q+ A +I + FFP G F FV V + E +E
Sbjct: 32 KGFIKDCPSGQLDAAGFQ----KIYKQFFPFGDP-TKFATFVFNVFDENKDGRIEFSEFI 86
Query: 102 DPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV---LRLMVG--VQVTEEQ--LE 154
+ KL +AF+LYDLD DG I+R+EML + + MVG V++ EE+ E
Sbjct: 87 QALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPE 146
Query: 155 NIADRTVQEADEDGDGAVSFVEF 177
DR D++ DG ++ EF
Sbjct: 147 KRVDRIFAMMDKNADGKLTLQEF 169
>gi|21624641 calcium binding protein 4 [Homo sapiens]
Length = 275
Score = 47.4 bits (111), Expect = 8e-06
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 28/161 (17%)
Query: 31 LHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQ--------RVDFPG 82
L F D ++ GY+S +L + LG E + SQ RVDF
Sbjct: 134 LQAAFEEFDTDRDGYISHRELGD----CMRTLGYMPTEMELLEVSQHIKMRMGGRVDFEE 189
Query: 83 FVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRL 142
FV ++ P E+T L R +L AF+ +D DRDG+I+ E+ + +
Sbjct: 190 FVELIG---PKLREETAHM-------LGVR--ELRIAFREFDRDRDGRITVAELREAVPA 237
Query: 143 MVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
++G + +L D ++E D +GDG V F EF L +
Sbjct: 238 LLGEPLAGPEL----DEMLREVDLNGDGTVDFDEFVMMLSR 274
Score = 32.0 bits (71), Expect = 0.35
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 114 NKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVS 173
++L AF+ +D DRDG IS E+ +R + G TE +L ++ Q G V
Sbjct: 132 DELQAAFEEFDTDRDGYISHRELGDCMRTL-GYMPTEMELLEVS----QHIKMRMGGRVD 186
Query: 174 FVEFTK 179
F EF +
Sbjct: 187 FEEFVE 192
>gi|218751877 EF-hand calcium binding domain 1 isoform b [Homo
sapiens]
Length = 159
Score = 47.4 bits (111), Expect = 8e-06
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 111 SRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQ----LENIADRTVQEADE 166
S K+ Y F+++DL+ DG IS+ EM +L+ + Q +EE ++++ + T+++ D
Sbjct: 48 SLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSEEDPDEGIKDLVEITLKKMDH 107
Query: 167 DGDGAVSFVEF 177
D DG +SF ++
Sbjct: 108 DHDGKLSFADY 118
>gi|13375787 EF-hand calcium binding domain 1 isoform a [Homo
sapiens]
Length = 211
Score = 47.4 bits (111), Expect = 8e-06
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 111 SRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQ----LENIADRTVQEADE 166
S K+ Y F+++DL+ DG IS+ EM +L+ + Q +EE ++++ + T+++ D
Sbjct: 100 SLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSEEDPDEGIKDLVEITLKKMDH 159
Query: 167 DGDGAVSFVEF 177
D DG +SF ++
Sbjct: 160 DHDGKLSFADY 170
>gi|7705419 hippocalcin-like protein 4 [Homo sapiens]
Length = 191
Score = 47.4 bits (111), Expect = 8e-06
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 35/181 (19%)
Query: 15 DSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGD------RIIE 68
+ + + T FS+ L + + F L G L+ + QQ+ + P GD
Sbjct: 14 EDLVQNTEFSEQELKQWYKGF--LKDCPSGILNLEEFQQL-YIKFFPYGDASKFAQHAFR 70
Query: 69 SFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRD 128
+F +G +DF F+ L+ S KL++AF++YDLD D
Sbjct: 71 TFDKNGDGTIDFREFICALS-----------------VTSRGSFEQKLNWAFEMYDLDGD 113
Query: 129 GKISRHEMLQVLRL---MVG----VQVTEEQL--ENIADRTVQEADEDGDGAVSFVEFTK 179
G+I+R EML+++ MVG +++ ++ L + D+ ++ D+D D ++ EF +
Sbjct: 114 GRITRLEMLEIIEAIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKE 173
Query: 180 S 180
+
Sbjct: 174 A 174
>gi|4757974 centrin 1 [Homo sapiens]
Length = 172
Score = 46.6 bits (109), Expect = 1e-05
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 21/119 (17%)
Query: 65 RIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYD 124
++I +G+ ++ F F+ V+ + + ++DT+ + K AF+L+D
Sbjct: 71 KMISEVDREGTGKISFNDFLAVMT--QKMSEKDTKEEILK--------------AFRLFD 114
Query: 125 LDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
D GKIS + +V + G +T+E+L+ + D EAD DGDG V+ EF + ++K
Sbjct: 115 DDETGKISFKNLKRVANEL-GENLTDEELQEMID----EADRDGDGEVNEEEFLRIMKK 168
Score = 43.5 bits (101), Expect = 1e-04
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 105 KPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEA 164
KPE ++ ++ AF L+D+D G I E+ +R + G + +E+++ + + E
Sbjct: 22 KPELTEDQKQEVREAFDLFDVDGSGTIDAKELKVAMRAL-GFEPRKEEMK----KMISEV 76
Query: 165 DEDGDGAVSFVEFTKSLEKMDVEQKMSIRILK 196
D +G G +SF +F + + E+ ILK
Sbjct: 77 DREGTGKISFNDFLAVMTQKMSEKDTKEEILK 108
>gi|16930817 DNA-dependent protein kinase catalytic
subunit-interacting protein 3 [Homo sapiens]
Length = 187
Score = 46.6 bits (109), Expect = 1e-05
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 21 TGFSQASLLRLHHRFRALDRN--KKGYLSRMDL----QQIGA---LAVNPLGDRIIESFF 71
T F++ ++RL +R++ L Y + D+ + IG+ L NP RI + F
Sbjct: 20 TFFTRKEIMRLFYRYQDLAPQLVPLDYTTCPDVKVPYELIGSMPELKDNPFRQRIAQVFS 79
Query: 72 PDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKI 131
DG + F+ + + + D K +YAF++YD + D I
Sbjct: 80 EDGDGHMTLDNFLDMFSVMSEMAPRDL----------------KAYYAFKIYDFNNDDYI 123
Query: 132 SRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEF 177
++ Q + + ++ E++ + ++ + EAD D DG +S +F
Sbjct: 124 CAWDLEQTVTKLTRGGLSAEEVSLVCEKVLDEADGDHDGRLSLEDF 169
>gi|21361559 visinin-like 1 [Homo sapiens]
Length = 191
Score = 46.2 bits (108), Expect = 2e-05
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 39/160 (24%)
Query: 43 KGYLS-----RMDLQQIGALAVN--PLGD------RIIESFFPDGSQRVDFPGFVRVLAH 89
KG+L R++L++ L V P GD +F +G +DF F+ L+
Sbjct: 32 KGFLKDCPSGRLNLEEFQQLYVKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSI 91
Query: 90 FRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRL---MVG- 145
S KL++AF +YDLD DGKI+R EML+++ MVG
Sbjct: 92 -----------------TSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMVGT 134
Query: 146 ---VQVTEEQL--ENIADRTVQEADEDGDGAVSFVEFTKS 180
+++ E+ L E D+ + D++ D ++ EF ++
Sbjct: 135 VIMMKMNEDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEA 174
>gi|27886676 Kv channel interacting protein 2 isoform 5 [Homo
sapiens]
Length = 225
Score = 46.2 bits (108), Expect = 2e-05
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 114 NKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQ-------VTEEQLENIADRTVQEADE 166
++L++AF LYDL++DG I++ EML +++ + + + EE + Q+ D
Sbjct: 134 DRLNWAFNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEAPREHVESFFQKMDR 193
Query: 167 DGDGAVSFVEFTKSLEK 183
+ DG V+ EF +S +K
Sbjct: 194 NKDGVVTIEEFIESCQK 210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,018,237
Number of Sequences: 37866
Number of extensions: 302368
Number of successful extensions: 1388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 241
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.