Guide to the Human Genome
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Name: CIB2 Sequence: fasta or formatted (187aa) NCBI GI: 5453708
Description:

DNA-dependent protein kinase catalytic subunit-interacting protein 2

Referenced in:

Calmodulin and Calcium
Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         11           2
 C cysteine            2.1          4           1
 D aspartate           9.6         18           1
 E glutamate          10.2         19           3
 F phenylalanine       8.6         16           2
 G glycine             3.2          6           1
 H histidine           1.6          3           1
 I isoleucine          6.4         12           2
 K lysine              7.0         13           2
 L leucine            10.2         19           1
 M methionine          3.2          6           1
 N asparagine          5.3         10           1
 P proline             4.3          8           1
 Q glutamine           2.1          4           1
 R arginine            3.7          7           1
 S serine              4.3          8           1
 T threonine           4.3          8           1
 V valine              5.3         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNA-dependent protein kinase catalytic subunit-intera... 
CIB3                  0.623   DNA-dependent protein kinase catalytic subunit-inter...
CIB1                  0.307   calcium and integrin binding 1 
CIB4                  0.279   calcium and integrin binding family member 4 
PPP3R1                0.175   protein phosphatase 3, regulatory subunit B, alpha is...
PPP3R2                0.158   protein phosphatase 3 regulatory subunit B, beta iso...
CHP                   0.132   calcium binding protein P22 
CHP2                  0.121   hepatocellular carcinoma antigen gene 520 
EFCAB1                0.099   EF-hand calcium binding domain 1 isoform a 
KCNIP3                0.090   Kv channel interacting protein 3 isoform 2 
KCNIP3                0.090   Kv channel interacting protein 3 isoform 1 
CALM3                 0.087   calmodulin 3 
CALM2                 0.087   calmodulin 2 
CALM1                 0.087   calmodulin 1 
CALML3                0.082   calmodulin-like 3 
EFCAB1                0.076   EF-hand calcium binding domain 1 isoform b 
HPCAL1                0.068   hippocalcin-like 1 
HPCAL1                0.068   hippocalcin-like 1 
CABP2                 0.065   calcium binding protein 2 isoform 2 
CABP2                 0.065   calcium binding protein 2 isoform 1 
DUOX1                 0.062   dual oxidase 1 precursor 
DUOX1                 0.062   dual oxidase 1 precursor 
HPCA                  0.062   hippocalcin 
NCALD                 0.062   neurocalcin delta 
NCALD                 0.062   neurocalcin delta 
NCALD                 0.062   neurocalcin delta 
NCALD                 0.062   neurocalcin delta 
NCALD                 0.062   neurocalcin delta 
NCALD                 0.062   neurocalcin delta 
NCALD                 0.062   neurocalcin delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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