Guide to the Human Genome
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Name: CIB4 Sequence: fasta or formatted (185aa) NCBI GI: 71274156
Description:

calcium and integrin binding family member 4

Referenced in:

Calmodulin and Calcium
Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          8           1
 C cysteine            3.2          6           1
 D aspartate           8.6         16           2
 E glutamate           8.1         15           2
 F phenylalanine       8.1         15           1
 G glycine             3.2          6           1
 H histidine           3.2          6           1
 I isoleucine          4.9          9           2
 K lysine              3.2          6           1
 L leucine            11.9         22           2
 M methionine          5.4         10           1
 N asparagine          4.9          9           1
 P proline             3.2          6           2
 Q glutamine           3.2          6           1
 R arginine            5.4         10           1
 S serine              8.1         15           2
 T threonine           3.2          6           1
 V valine              3.2          6           1
 W tryptophan          1.1          2           1
 Y tyrosine            3.2          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium and integrin binding family member 4 
CIB1                  0.339   calcium and integrin binding 1 
CIB2                  0.275   DNA-dependent protein kinase catalytic subunit-intera...
CIB3                  0.225   DNA-dependent protein kinase catalytic subunit-inter...
PPP3R1                0.111   protein phosphatase 3, regulatory subunit B, alpha is...
PPP3R2                0.100   protein phosphatase 3 regulatory subunit B, beta iso...
CHP                   0.097   calcium binding protein P22 
KCNIP3                0.075   Kv channel interacting protein 3 isoform 2 
KCNIP3                0.075   Kv channel interacting protein 3 isoform 1 
CHP2                  0.069   hepatocellular carcinoma antigen gene 520 
KCNIP2                0.069   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.069   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.069   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.069   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.069   Kv channel interacting protein 2 isoform 2 
KCNIP1                0.067   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.067   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.067   Kv channel interacting protein 1 isoform 2 
KCNIP4                0.067   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.067   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.067   Kv channel interacting protein 4 isoform 4 
KCNIP4                0.067   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.067   Kv channel interacting protein 4 isoform 2 
KCNIP4                0.067   Kv channel interacting protein 4 isoform 1 
EFCAB1                0.061   EF-hand calcium binding domain 1 isoform b 
EFCAB1                0.061   EF-hand calcium binding domain 1 isoform a 
HPCAL1                0.061   hippocalcin-like 1 
HPCAL1                0.061   hippocalcin-like 1 
DGKB                  0.061   diacylglycerol kinase, beta isoform 2 
DGKB                  0.061   diacylglycerol kinase, beta isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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