Guide to the Human Genome
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Name: TESC Sequence: fasta or formatted (267aa) NCBI GI: 95007022
Description:

tescalcin

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         21           2
 C cysteine            1.1          3           1
 D aspartate           6.0         16           1
 E glutamate          10.1         27           2
 F phenylalanine       5.2         14           2
 G glycine             7.1         19           1
 H histidine           2.2          6           1
 I isoleucine          5.2         14           1
 K lysine              3.7         10           1
 L leucine             6.7         18           2
 M methionine          4.5         12           2
 N asparagine          4.1         11           2
 P proline             5.2         14           1
 Q glutamine           3.4          9           1
 R arginine           10.1         27           2
 S serine              6.7         18           2
 T threonine           4.9         13           2
 V valine              3.7         10           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tescalcin 
CHP                   0.175   calcium binding protein P22 
CHP2                  0.107   hepatocellular carcinoma antigen gene 520 
PPP3R1                0.092   protein phosphatase 3, regulatory subunit B, alpha is...
PPP3R2                0.066   protein phosphatase 3 regulatory subunit B, beta iso...
CIB1                  0.043   calcium and integrin binding 1 
KCNIP1                0.031   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.031   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.031   Kv channel interacting protein 1 isoform 2 
CIB4                  0.029   calcium and integrin binding family member 4 
KCNIP2                0.027   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.027   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.027   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.027   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.027   Kv channel interacting protein 2 isoform 2 
CABP4                 0.025   calcium binding protein 4 
KCNIP2                0.023   Kv channel interacting protein 2 isoform 4 
KCNIP4                0.023   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.023   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.023   Kv channel interacting protein 4 isoform 4 
KCNIP4                0.023   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.023   Kv channel interacting protein 4 isoform 2 
KCNIP4                0.023   Kv channel interacting protein 4 isoform 1 
FREQ                  0.021   frequenin homolog isoform 1 
CETN2                 0.021   caltractin 
GUCA1A                0.021   guanylate cyclase activator 1A (retina) 
KCNIP3                0.021   Kv channel interacting protein 3 isoform 2 
KCNIP3                0.021   Kv channel interacting protein 3 isoform 1 
CIB3                  0.021   DNA-dependent protein kinase catalytic subunit-inter...
LOC100131271          0.019   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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