Guide to the Human Genome
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Name: SLC36A1 Sequence: fasta or formatted (476aa) NCBI GI: 41352721
Description:

solute carrier family 36 member 1

Referenced in:

Lysosomes and Related Organelles
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         23           2
 C cysteine            2.7         13           2
 D aspartate           2.7         13           1
 E glutamate           3.4         16           2
 F phenylalanine       6.9         33           2
 G glycine             6.3         30           1
 H histidine           2.1         10           2
 I isoleucine          9.0         43           3
 K lysine              2.3         11           1
 L leucine            14.3         68           2
 M methionine          2.5         12           1
 N asparagine          4.6         22           2
 P proline             5.5         26           2
 Q glutamine           2.7         13           1
 R arginine            3.4         16           2
 S serine              8.0         38           3
 T threonine           5.5         26           2
 V valine              8.2         39           2
 W tryptophan          1.1          5           1
 Y tyrosine            4.0         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 36 member 1 
SLC36A2               0.687   solute carrier family 36, member 2 
SLC36A3               0.586   solute carrier family 36, member 3 isoform 2 
SLC36A3               0.565   solute carrier family 36, member 3 isoform 1 
SLC36A4               0.490   solute carrier family 36 (proton/amino acid symporte...
SLC32A1               0.057   solute carrier family 32, member 1 
SLC38A8               0.033   solute carrier family 38, member 8 
SLC38A6               0.031   solute carrier family 38, member 6 
SLC38A7               0.031   solute carrier family 38, member 7 
SLC38A11              0.030   solute carrier family 38, member 11 
SLC38A10              0.029   solute carrier family 38, member 10 isoform a 
SLC38A10              0.029   solute carrier family 38, member 10 isoform b 
SLC38A1               0.027   amino acid transporter system A1 
SLC38A1               0.027   amino acid transporter system A1 
SLC38A4               0.027   solute carrier family 38, member 4 
SLC38A4               0.027   solute carrier family 38, member 4 
SLC38A3               0.024   solute carrier family 38, member 3 
SLC38A2               0.024   solute carrier family 38, member 2 
SLC38A9               0.022   solute carrier family 38, member 9 
SLC38A5               0.012   solute carrier family 38, member 5 
SLC7A9                0.009   solute carrier family 7, member 9 
SLC7A9                0.009   solute carrier family 7, member 9 
SLC12A6               0.008   solute carrier family 12, member 6 isoform e 
SLC12A6               0.008   solute carrier family 12, member 6 isoform d 
SLC12A6               0.008   solute carrier family 12, member 6 isoform c 
SLC12A6               0.008   solute carrier family 12, member 6 isoform c 
SLC12A6               0.008   solute carrier family 12, member 6 isoform b 
SLC12A6               0.008   solute carrier family 12, member 6 isoform a 
SLC39A4               0.008   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.008   solute carrier family 39 (zinc transporter), member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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