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Search of human proteins with 224589117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224589117 hypothetical protein LOC389493 [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224589117 hypothetical protein LOC389493 [Homo sapiens] 205 6e-54
gi|6912570 p8 protein isoform b [Homo sapiens] 61 2e-10
gi|109948307 p8 protein isoform a [Homo sapiens] 56 5e-09
gi|239754614 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|116812632 hypothetical protein LOC154743 [Homo sapiens] 30 0.32
gi|239754630 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo ... 28 1.2
gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo ... 28 1.2
gi|239508925 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|4504507 3 beta-hydroxysteroid dehydrogenase 1 [Homo sapiens] 28 1.6
gi|38371739 RAB15, member RAS onocogene family [Homo sapiens] 28 2.1
gi|239755390 PREDICTED: similar to DMBT1 isoform 1 [Homo sapiens] 27 2.7
gi|239755388 PREDICTED: similar to DMBT1 isoform 2 [Homo sapiens] 27 2.7
gi|148539844 deleted in malignant brain tumors 1 isoform c precu... 27 2.7
gi|148539842 deleted in malignant brain tumors 1 isoform b precu... 27 2.7
gi|148539840 deleted in malignant brain tumors 1 isoform a precu... 27 2.7
gi|188595668 choline acetyltransferase isoform 1 [Homo sapiens] 27 2.7
gi|218931226 choline acetyltransferase isoform 1 [Homo sapiens] 27 2.7
gi|218931224 choline acetyltransferase isoform 3 [Homo sapiens] 27 2.7
gi|218931221 choline acetyltransferase isoform 1 [Homo sapiens] 27 2.7
gi|188595684 choline acetyltransferase isoform 1 [Homo sapiens] 27 2.7
gi|188595672 choline acetyltransferase isoform 1 [Homo sapiens] 27 2.7
gi|188595670 choline acetyltransferase isoform 2 [Homo sapiens] 27 2.7
gi|21264343 scaffold attachment factor B [Homo sapiens] 27 3.5
gi|32401437 H1 histone family, member N, testis-specific [Homo s... 27 3.5
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 27 4.6
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 27 4.6
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 27 4.6
gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens] 27 4.6
>gi|224589117 hypothetical protein LOC389493 [Homo sapiens]
Length = 97
Score = 205 bits (522), Expect = 6e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MEAPAERALPRLQALARPPPPISYEEELYDCLDYYYLRDFPACGAGRSKGRTRREQALRT 60
MEAPAERALPRLQALARPPPPISYEEELYDCLDYYYLRDFPACGAGRSKGRTRREQALRT
Sbjct: 1 MEAPAERALPRLQALARPPPPISYEEELYDCLDYYYLRDFPACGAGRSKGRTRREQALRT 60
Query: 61 NWPAPGGHERKVAQKLLNGQRKRRQRQLHPKMRTRLT 97
NWPAPGGHERKVAQKLLNGQRKRRQRQLHPKMRTRLT
Sbjct: 61 NWPAPGGHERKVAQKLLNGQRKRRQRQLHPKMRTRLT 97
>gi|6912570 p8 protein isoform b [Homo sapiens]
Length = 82
Score = 61.2 bits (147), Expect = 2e-10
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 10 PRLQALARPPPPISYEEELYDCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPAPGGHE 69
P A +PP P + L D D Y L G GR KGRT+RE A TN P+PGGHE
Sbjct: 6 PATSAPQQPPGPEDEDSSL-DESDLYSLAHSYLGGGGR-KGRTKREAAANTNRPSPGGHE 63
Query: 70 RKVAQKLLNGQRKRR 84
RK+ KL N +RK+R
Sbjct: 64 RKLVTKLQNSERKKR 78
>gi|109948307 p8 protein isoform a [Homo sapiens]
Length = 100
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 44 GAGRSKGRTRREQALRTNWPAPGGHERKVAQKLLNGQRKRR 84
G G KGRT+RE A TN P+PGGHERK+ KL N +RK+R
Sbjct: 56 GGGGRKGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKR 96
>gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 490
Score = 30.4 bits (67), Expect = 0.32
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 13 QALARPPPPISYEEE 27
Q+ A+PPPPISYEEE
Sbjct: 5 QSSAQPPPPISYEEE 19
>gi|116812632 hypothetical protein LOC154743 [Homo sapiens]
Length = 405
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 44 GAGRSKGRTRREQALRTNWPAPGGHERKVAQKLLNGQRKRRQRQLHPKMR 93
GAG + R ++A N P P ERK+ Q+ L+G K R+L K R
Sbjct: 4 GAG-GRNTARAQRAGSPNTPPPREQERKLEQEKLSGVVKSVHRRLRKKYR 52
>gi|239754630 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 28 LYDCLDYYYLRDFPACGAGRSKGRT--RREQALRTNWPAPGGHERKVAQKLLNGQRKRRQ 85
L+ L ++LR G+GR + RT R E +W G +R + +RR+
Sbjct: 302 LHQLLAVHHLR---GAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRR 358
Query: 86 RQLHPKMRTR 95
+L P+ R R
Sbjct: 359 LELRPRDRAR 368
>gi|239749175 PREDICTED: hypothetical protein XP_002346935 [Homo
sapiens]
Length = 377
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 28 LYDCLDYYYLRDFPACGAGRSKGRT--RREQALRTNWPAPGGHERKVAQKLLNGQRKRRQ 85
L+ L ++LR G+GR + RT R E +W G +R + +RR+
Sbjct: 302 LHQLLAVHHLR---GAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRR 358
Query: 86 RQLHPKMRTR 95
+L P+ R R
Sbjct: 359 LELRPRDRAR 368
>gi|239743250 PREDICTED: hypothetical protein XP_002342811 [Homo
sapiens]
Length = 377
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 28 LYDCLDYYYLRDFPACGAGRSKGRT--RREQALRTNWPAPGGHERKVAQKLLNGQRKRRQ 85
L+ L ++LR G+GR + RT R E +W G +R + +RR+
Sbjct: 302 LHQLLAVHHLR---GAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRR 358
Query: 86 RQLHPKMRTR 95
+L P+ R R
Sbjct: 359 LELRPRDRAR 368
>gi|239508925 PREDICTED: hypothetical protein [Homo sapiens]
Length = 377
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 28 LYDCLDYYYLRDFPACGAGRSKGRT--RREQALRTNWPAPGGHERKVAQKLLNGQRKRRQ 85
L+ L ++LR G+GR + RT R E +W G +R + +RR+
Sbjct: 302 LHQLLAVHHLR---GAGSGRRRRRTLGRPEGLGGRDWSPSAGEDRPTERAAEAAAARRRR 358
Query: 86 RQLHPKMRTR 95
+L P+ R R
Sbjct: 359 LELRPRDRAR 368
>gi|4504507 3 beta-hydroxysteroid dehydrogenase 1 [Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 1.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 55 EQALRTNWPAPGGHERKVAQK 75
E+ L WPAP H +K+A+K
Sbjct: 144 EEPLENTWPAPYPHSKKLAEK 164
>gi|38371739 RAB15, member RAS onocogene family [Homo sapiens]
Length = 208
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 41 PACGAGRSKGRTRREQALRTN----------WPAPGGHERKVAQKLLNGQRKRRQR 86
P CG G S G+ RR + N W G +K +++ L G R R R
Sbjct: 116 PGCGEGASPGKARRGPDGKANASRKLCLPQPWMKTSGTHQKASRRSLLGIRLMRSR 171
>gi|239755390 PREDICTED: similar to DMBT1 isoform 1 [Homo sapiens]
Length = 1662
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 CGAGRSKGRTRREQALRTNWPA-PGGHERKVAQKLLNGQRKRRQR 86
C A +S+ R + L TN PA G E +A +L+NG + R R
Sbjct: 857 CSAAQSQSTPRPDTWLTTNLPALTVGSESSLALRLVNGGDRCRGR 901
>gi|239755388 PREDICTED: similar to DMBT1 isoform 2 [Homo sapiens]
Length = 1788
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 CGAGRSKGRTRREQALRTNWPA-PGGHERKVAQKLLNGQRKRRQR 86
C A +S+ R + L TN PA G E +A +L+NG + R R
Sbjct: 983 CSAAQSQSTPRPDTWLTTNLPALTVGSESSLALRLVNGGDRCRGR 1027
>gi|148539844 deleted in malignant brain tumors 1 isoform c precursor
[Homo sapiens]
Length = 2403
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 CGAGRSKGRTRREQALRTNWPA-PGGHERKVAQKLLNGQRKRRQR 86
C A +S+ R + L TN PA G E +A +L+NG + R R
Sbjct: 1598 CSAAQSQSTPRPDTWLTTNLPALTVGSESSLALRLVNGGDRCRGR 1642
>gi|148539842 deleted in malignant brain tumors 1 isoform b precursor
[Homo sapiens]
Length = 2413
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 CGAGRSKGRTRREQALRTNWPA-PGGHERKVAQKLLNGQRKRRQR 86
C A +S+ R + L TN PA G E +A +L+NG + R R
Sbjct: 1608 CSAAQSQSTPRPDTWLTTNLPALTVGSESSLALRLVNGGDRCRGR 1652
>gi|148539840 deleted in malignant brain tumors 1 isoform a precursor
[Homo sapiens]
Length = 1785
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 CGAGRSKGRTRREQALRTNWPA-PGGHERKVAQKLLNGQRKRRQR 86
C A +S+ R + L TN PA G E +A +L+NG + R R
Sbjct: 980 CSAAQSQSTPRPDTWLTTNLPALTVGSESSLALRLVNGGDRCRGR 1024
>gi|188595668 choline acetyltransferase isoform 1 [Homo sapiens]
Length = 630
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 6 ERALPRLQALARPPPPISYEEELY-DCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPA 64
E LP+L P PP+ Y C+ + S+ + R+ QA+ + A
Sbjct: 10 ESGLPKL-----PVPPLQQTLATYLQCMRHLV-----------SEEQFRKSQAIVQQFGA 53
Query: 65 PGGHERKVAQKLLNGQRK 82
PGG + QKLL Q K
Sbjct: 54 PGGLGETLQQKLLERQEK 71
>gi|218931226 choline acetyltransferase isoform 1 [Homo sapiens]
Length = 630
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 6 ERALPRLQALARPPPPISYEEELY-DCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPA 64
E LP+L P PP+ Y C+ + S+ + R+ QA+ + A
Sbjct: 10 ESGLPKL-----PVPPLQQTLATYLQCMRHLV-----------SEEQFRKSQAIVQQFGA 53
Query: 65 PGGHERKVAQKLLNGQRK 82
PGG + QKLL Q K
Sbjct: 54 PGGLGETLQQKLLERQEK 71
>gi|218931224 choline acetyltransferase isoform 3 [Homo sapiens]
Length = 666
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 6 ERALPRLQALARPPPPISYEEELY-DCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPA 64
E LP+L P PP+ Y C+ + S+ + R+ QA+ + A
Sbjct: 46 ESGLPKL-----PVPPLQQTLATYLQCMRHLV-----------SEEQFRKSQAIVQQFGA 89
Query: 65 PGGHERKVAQKLLNGQRK 82
PGG + QKLL Q K
Sbjct: 90 PGGLGETLQQKLLERQEK 107
>gi|218931221 choline acetyltransferase isoform 1 [Homo sapiens]
Length = 630
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 6 ERALPRLQALARPPPPISYEEELY-DCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPA 64
E LP+L P PP+ Y C+ + S+ + R+ QA+ + A
Sbjct: 10 ESGLPKL-----PVPPLQQTLATYLQCMRHLV-----------SEEQFRKSQAIVQQFGA 53
Query: 65 PGGHERKVAQKLLNGQRK 82
PGG + QKLL Q K
Sbjct: 54 PGGLGETLQQKLLERQEK 71
>gi|188595684 choline acetyltransferase isoform 1 [Homo sapiens]
Length = 630
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 6 ERALPRLQALARPPPPISYEEELY-DCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPA 64
E LP+L P PP+ Y C+ + S+ + R+ QA+ + A
Sbjct: 10 ESGLPKL-----PVPPLQQTLATYLQCMRHLV-----------SEEQFRKSQAIVQQFGA 53
Query: 65 PGGHERKVAQKLLNGQRK 82
PGG + QKLL Q K
Sbjct: 54 PGGLGETLQQKLLERQEK 71
>gi|188595672 choline acetyltransferase isoform 1 [Homo sapiens]
Length = 630
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 6 ERALPRLQALARPPPPISYEEELY-DCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPA 64
E LP+L P PP+ Y C+ + S+ + R+ QA+ + A
Sbjct: 10 ESGLPKL-----PVPPLQQTLATYLQCMRHLV-----------SEEQFRKSQAIVQQFGA 53
Query: 65 PGGHERKVAQKLLNGQRK 82
PGG + QKLL Q K
Sbjct: 54 PGGLGETLQQKLLERQEK 71
>gi|188595670 choline acetyltransferase isoform 2 [Homo sapiens]
Length = 748
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 6 ERALPRLQALARPPPPISYEEELY-DCLDYYYLRDFPACGAGRSKGRTRREQALRTNWPA 64
E LP+L P PP+ Y C+ + S+ + R+ QA+ + A
Sbjct: 128 ESGLPKL-----PVPPLQQTLATYLQCMRHLV-----------SEEQFRKSQAIVQQFGA 171
Query: 65 PGGHERKVAQKLLNGQRK 82
PGG + QKLL Q K
Sbjct: 172 PGGLGETLQQKLLERQEK 189
>gi|21264343 scaffold attachment factor B [Homo sapiens]
Length = 915
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 47 RSKGRTRREQALRTNWPAPGGHERKVAQKLLNGQRKRRQRQ 87
R + R+ REQ ++ W ++A++ L QR+R +R+
Sbjct: 622 RVRERSEREQRMQAQWEREERERLEIARERLAFQRQRLERE 662
>gi|32401437 H1 histone family, member N, testis-specific [Homo
sapiens]
Length = 255
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 36 YLRDFPACGAGRSKGRTRREQALRTNW--PAPGGHERKVAQKLLNGQRKRRQ 85
Y R + R GR R+E+ R W PA R+ Q L RK R+
Sbjct: 119 YFRVWKVPKPRRKPGRARQEEGTRAPWRTPAAPRSSRRRRQPLRKAARKARE 170
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 3 APAERALPRLQALARPPPP---ISYEEELYDCLDYYY 36
AP ER P ++ L P PP Y YD +DYY+
Sbjct: 282 APEERIEPPVKPLLPPLPPDYGDGYVIPNYDDMDYYF 318
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 45 AGRSKGRTRREQALRTNWPAPGGHERKVA 73
AGR + RR ++L++ W PGG ++
Sbjct: 193 AGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 45 AGRSKGRTRREQALRTNWPAPGGHERKVA 73
AGR + RR ++L++ W PGG ++
Sbjct: 193 AGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 45 AGRSKGRTRREQALRTNWPAPGGHERKVA 73
AGR + RR ++L++ W PGG ++
Sbjct: 193 AGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
>gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens]
Length = 782
Score = 26.6 bits (57), Expect = 4.6
Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 3 APAERALPRLQALARPP-----PPISYEEELYDCLDYYYLRDFPACGAGRSKGRTRREQA 57
A A AL L A A P PP + L C Y DF C GR TRR A
Sbjct: 6 AGALLALWVLGAAAHPQCLDFRPPFRPTQPLRLCAQY---SDFGCCDEGRDAELTRRFWA 62
Query: 58 LRT-----NWPAPGGHER 70
L + W A G+ R
Sbjct: 63 LASRVDAAEWAACAGYAR 80
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,955,484
Number of Sequences: 37866
Number of extensions: 226628
Number of successful extensions: 825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 41
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.