Guide to the Human Genome
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Name: C7orf60 Sequence: fasta or formatted (405aa) NCBI GI: 116812632
Description:

hypothetical protein LOC154743

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         24           1
 C cysteine            2.7         11           2
 D aspartate           5.2         21           1
 E glutamate           8.9         36           2
 F phenylalanine       4.9         20           1
 G glycine             4.9         20           2
 H histidine           2.7         11           1
 I isoleucine          4.7         19           2
 K lysine              6.7         27           2
 L leucine            11.4         46           3
 M methionine          2.2          9           3
 N asparagine          4.0         16           1
 P proline             5.4         22           3
 Q glutamine           4.2         17           2
 R arginine            5.2         21           2
 S serine              8.1         33           2
 T threonine           3.7         15           2
 V valine              4.4         18           3
 W tryptophan          1.2          5           1
 Y tyrosine            3.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC154743 
FBXO31                0.010   F-box protein 31 
ERC2                  0.010   cytomatrix protein p110 
NOL12                 0.009   nucleolar protein 12 
LOC100133220          0.009   PREDICTED: hypothetical protein 
SNRNP48               0.009   U11/U12 snRNP 48K 
MLXIP                 0.007   MLX interacting protein 
KDM5A                 0.006   retinoblastoma binding protein 2 isoform 1 
LOC389493             0.006   hypothetical protein LOC389493 
LOC100292443          0.006   PREDICTED: hypothetical protein 
MAP7                  0.006   microtubule-associated protein 7 
INCENP                0.006   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.006   inner centromere protein antigens 135/155kDa isofor...
UGT2B10               0.006   UDP glucuronosyltransferase 2B10 isoform 1 
LOC651986             0.006   PREDICTED: similar to forkhead box L2 
LOC100288524          0.006   PREDICTED: hypothetical protein XP_002342748 
DIDO1                 0.006   death inducer-obliterator 1 isoform c 
DIDO1                 0.006   death inducer-obliterator 1 isoform b 
DIDO1                 0.006   death inducer-obliterator 1 isoform a 
DIDO1                 0.006   death inducer-obliterator 1 isoform a 
LRCH4                 0.006   leucine-rich repeats and calponin homology (CH) doma...
MKI67                 0.005   antigen identified by monoclonal antibody Ki-67 iso...
MKI67                 0.005   antigen identified by monoclonal antibody Ki-67 iso...
DGKG                  0.005   diacylglycerol kinase gamma isoform 3 
DGKG                  0.005   diacylglycerol kinase gamma isoform 2 
DGKG                  0.005   diacylglycerol kinase gamma isoform 1 
NNT                   0.005   nicotinamide nucleotide transhydrogenase 
NNT                   0.005   nicotinamide nucleotide transhydrogenase 
CDR2L                 0.005   cerebellar degeneration-related protein 2-like [Hom...
HNRNPK                0.005   heterogeneous nuclear ribonucleoprotein K isoform a ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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