Guide to the Human Genome
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Name: CHAT Sequence: fasta or formatted (630aa) NCBI GI: 218931226
Description:

choline acetyltransferase isoform 1

Referenced in:

Acetylcholine

Other entries for this name:
alt mRNA [630aa] choline acetyltransferase isoform 1
alt prot [748aa] choline acetyltransferase isoform 2
alt mRNA [630aa] choline acetyltransferase isoform 1
alt mRNA [630aa] choline acetyltransferase isoform 1
alt mRNA [630aa] choline acetyltransferase isoform 1
alt prot [666aa] choline acetyltransferase isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         49           2
 C cysteine            3.2         20           2
 D aspartate           4.6         29           2
 E glutamate           5.9         37           2
 F phenylalanine       4.0         25           2
 G glycine             5.1         32           3
 H histidine           2.5         16           1
 I isoleucine          4.1         26           1
 K lysine              5.2         33           2
 L leucine            11.3         71           4
 M methionine          2.5         16           1
 N asparagine          3.0         19           2
 P proline             5.7         36           2
 Q glutamine           5.4         34           2
 R arginine            6.0         38           2
 S serine              8.4         53           3
 T threonine           5.4         34           3
 V valine              6.2         39           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.9         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   choline acetyltransferase isoform 1 
CHAT                  1.000   choline acetyltransferase isoform 1 
CHAT                  1.000   choline acetyltransferase isoform 3 
CHAT                  1.000   choline acetyltransferase isoform 1 
CHAT                  1.000   choline acetyltransferase isoform 1 
CHAT                  1.000   choline acetyltransferase isoform 1 
CHAT                  1.000   choline acetyltransferase isoform 2 
CRAT                  0.363   carnitine acetyltransferase precursor 
CPT1A                 0.191   carnitine palmitoyltransferase 1A liver isoform 1 [H...
CROT                  0.190   peroxisomal carnitine O-octanoyltransferase isoform ...
CPT1A                 0.182   carnitine palmitoyltransferase 1A liver isoform 2 [H...
CROT                  0.178   peroxisomal carnitine O-octanoyltransferase isoform...
CPT1B                 0.178   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.178   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.178   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.178   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.178   carnitine palmitoyltransferase 1B isoform a 
CPT2                  0.175   carnitine O-palmitoyltransferase precursor 
CPT1B                 0.164   carnitine palmitoyltransferase 1B isoform c 
CPT1C                 0.160   carnitine palmitoyltransferase 1C isoform 1 
CPT1C                 0.159   carnitine palmitoyltransferase 1C isoform 2 
CPT1B                 0.100   carnitine palmitoyltransferase 1B isoform d 
TRIM32                0.009   tripartite motif-containing 32 
TRIM32                0.009   tripartite motif-containing 32 
TNRC18                0.006   trinucleotide repeat containing 18 
PXN                   0.006   paxillin isoform 3 
PXN                   0.006   paxillin isoform 2 
PXN                   0.006   paxillin isoform 1 
COL6A3                0.004   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.004   alpha 3 type VI collagen isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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