Guide to the Human Genome
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Name: LOC389493 Sequence: fasta or formatted (97aa) NCBI GI: 224589117
Description:

hypothetical protein LOC389493

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         10           1
 C cysteine            2.1          2           1
 D aspartate           3.1          3           1
 E glutamate           7.2          7           3
 F phenylalanine       1.0          1           1
 G glycine             6.2          6           2
 H histidine           2.1          2           1
 I isoleucine          1.0          1           1
 K lysine              5.2          5           1
 L leucine            11.3         11           2
 M methionine          2.1          2           1
 N asparagine          2.1          2           1
 P proline            10.3         10           4
 Q glutamine           6.2          6           1
 R arginine           16.5         16           2
 S serine              2.1          2           1
 T threonine           4.1          4           1
 V valine              1.0          1           1
 W tryptophan          1.0          1           1
 Y tyrosine            5.2          5           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389493 
NUPR1                 0.200   p8 protein isoform b 
NUPR1                 0.172   p8 protein isoform a 
LOC100131973          0.028   PREDICTED: hypothetical protein 
C7orf60               0.028   hypothetical protein LOC154743 
LOC100293650          0.017   PREDICTED: hypothetical protein 
LOC100290789          0.017   PREDICTED: hypothetical protein XP_002346935 
LOC100289506          0.017   PREDICTED: hypothetical protein XP_002342811 
LOC100289506          0.017   PREDICTED: hypothetical protein 
HSD3B1                0.017   3 beta-hydroxysteroid dehydrogenase 1 
RAB15                 0.017   RAB15, member RAS onocogene family 
LOC100291777          0.011   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.011   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform a precu...
CHAT                  0.011   choline acetyltransferase isoform 1 
CHAT                  0.011   choline acetyltransferase isoform 1 
CHAT                  0.011   choline acetyltransferase isoform 3 
CHAT                  0.011   choline acetyltransferase isoform 1 
CHAT                  0.011   choline acetyltransferase isoform 1 
CHAT                  0.011   choline acetyltransferase isoform 1 
CHAT                  0.011   choline acetyltransferase isoform 2 
SAFB                  0.011   scaffold attachment factor B 
H1FNT                 0.011   H1 histone family, member N, testis-specific 
AEBP1                 0.011   adipocyte enhancer binding protein 1 precursor [Homo...
LOC100292172          0.011   PREDICTED: hypothetical protein 
LOC100289763          0.011   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.011   PREDICTED: hypothetical protein XP_002343623 
HHIPL1                0.011   HHIP-like protein 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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