Guide to the Human Genome
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Name: CHAT Sequence: fasta or formatted (748aa) NCBI GI: 188595670
Description:

choline acetyltransferase isoform 2

Referenced in:

Acetylcholine

Other entries for this name:
alt prot [630aa] choline acetyltransferase isoform 1
alt prot [630aa] choline acetyltransferase isoform 1
alt prot [630aa] choline acetyltransferase isoform 1
alt prot [630aa] choline acetyltransferase isoform 1
alt prot [666aa] choline acetyltransferase isoform 3
alt prot [630aa] choline acetyltransferase isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         63           2
 C cysteine            3.2         24           2
 D aspartate           4.1         31           2
 E glutamate           5.9         44           2
 F phenylalanine       3.5         26           2
 G glycine             7.1         53           4
 H histidine           2.7         20           1
 I isoleucine          3.7         28           1
 K lysine              5.3         40           2
 L leucine            10.4         78           4
 M methionine          2.3         17           1
 N asparagine          2.7         20           2
 P proline             7.2         54           3
 Q glutamine           4.7         35           2
 R arginine            6.8         51           2
 S serine              7.5         56           3
 T threonine           5.5         41           3
 V valine              5.6         42           2
 W tryptophan          0.9          7           1
 Y tyrosine            2.4         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   choline acetyltransferase isoform 2 
CHAT                  0.863   choline acetyltransferase isoform 3 
CHAT                  0.830   choline acetyltransferase isoform 1 
CHAT                  0.830   choline acetyltransferase isoform 1 
CHAT                  0.830   choline acetyltransferase isoform 1 
CHAT                  0.830   choline acetyltransferase isoform 1 
CHAT                  0.830   choline acetyltransferase isoform 1 
CRAT                  0.301   carnitine acetyltransferase precursor 
CPT1A                 0.158   carnitine palmitoyltransferase 1A liver isoform 1 [H...
CROT                  0.157   peroxisomal carnitine O-octanoyltransferase isoform ...
CPT1A                 0.151   carnitine palmitoyltransferase 1A liver isoform 2 [H...
CROT                  0.147   peroxisomal carnitine O-octanoyltransferase isoform...
CPT1B                 0.147   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.147   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.147   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.147   carnitine palmitoyltransferase 1B isoform a 
CPT1B                 0.147   carnitine palmitoyltransferase 1B isoform a 
CPT2                  0.145   carnitine O-palmitoyltransferase precursor 
CPT1B                 0.136   carnitine palmitoyltransferase 1B isoform c 
CPT1C                 0.133   carnitine palmitoyltransferase 1C isoform 1 
CPT1C                 0.132   carnitine palmitoyltransferase 1C isoform 2 
CPT1B                 0.083   carnitine palmitoyltransferase 1B isoform d 
NACA                  0.012   nascent polypeptide-associated complex alpha subuni...
LOC100293492          0.011   PREDICTED: hypothetical protein 
LOC729162             0.011   PREDICTED: similar to hCG1981372 
LOC389906             0.011   PREDICTED: similar to Serine/threonine-protein kina...
LOC729162             0.011   PREDICTED: similar to hCG1981372 
SAMD1                 0.011   sterile alpha motif domain containing 1 
ARX                   0.010   aristaless related homeobox 
WIPF2                 0.010   WIRE protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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