Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293650 Sequence: fasta or formatted (377aa) NCBI GI: 239754630
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         40           4
 C cysteine            2.4          9           2
 D aspartate           2.9         11           2
 E glutamate           5.0         19           2
 F phenylalanine       2.9         11           1
 G glycine            11.9         45           2
 H histidine           5.0         19           2
 I isoleucine          3.2         12           1
 K lysine              3.2         12           2
 L leucine            13.5         51           3
 M methionine          0.3          1           1
 N asparagine          1.1          4           1
 P proline             6.1         23           2
 Q glutamine           3.7         14           2
 R arginine            9.8         37           5
 S serine              3.4         13           2
 T threonine           2.7         10           1
 V valine             10.3         39           3
 W tryptophan          0.8          3           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290789          1.000   PREDICTED: hypothetical protein XP_002346935 
LOC100289506          1.000   PREDICTED: hypothetical protein XP_002342811 
LOC100289506          1.000   PREDICTED: hypothetical protein 
LOC100293537          0.014   PREDICTED: hypothetical protein 
LOC100289822          0.014   PREDICTED: hypothetical protein XP_002347911 
LOC100288545          0.014   PREDICTED: hypothetical protein XP_002342214 
EPPK1                 0.014   epiplakin 1 
LOC389895             0.014   PREDICTED: hypothetical protein 
LOC389895             0.014   PREDICTED: hypothetical protein 
LOC389895             0.014   PREDICTED: hypothetical protein 
EIF4H                 0.012   eukaryotic translation initiation factor 4H isoform ...
EIF4H                 0.012   eukaryotic translation initiation factor 4H isoform ...
SOAT2                 0.011   acyl-CoA:cholesterol acyltransferase 2 
ARHGAP23              0.008   Rho GTPase activating protein 23 
LOC100290946          0.008   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.008   PREDICTED: hypothetical protein XP_002344246 
PHRF1                 0.008   PHD and ring finger domains 1 
DDX3X                 0.008   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
UMODL1                0.008   uromodulin-like 1 isoform 1 precursor 
PTBP1                 0.007   polypyrimidine tract-binding protein 1 isoform b [Ho...
PTBP1                 0.007   polypyrimidine tract-binding protein 1 isoform a [Hom...
MED13                 0.007   mediator complex subunit 13 
COL8A1                0.007   alpha 1 type VIII collagen precursor 
COL8A1                0.007   alpha 1 type VIII collagen precursor 
CLIC6                 0.007   chloride intracellular channel 6 
KIAA0895L             0.007   hypothetical protein LOC653319 
ABRA                  0.007   actin-binding Rho activating protein 
COL1A1                0.007   alpha 1 type I collagen preproprotein 
LOC100293909          0.007   PREDICTED: similar to eukaryotic translation elonga...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press