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Search of human proteins with 223633980
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
sapiens]
(465 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo sapi... 978 0.0
gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo sapi... 483 e-136
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 175 7e-44
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 174 2e-43
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 174 2e-43
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 148 9e-36
gi|56090523 shisa homolog 2 [Homo sapiens] 55 1e-07
gi|122937450 shisa homolog 3 [Homo sapiens] 52 1e-06
gi|39930575 shisa homolog 4 [Homo sapiens] 47 3e-05
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 35 0.11
gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo ... 34 0.25
gi|55956899 keratin 9 [Homo sapiens] 34 0.32
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 33 0.55
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 33 0.55
gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo ... 33 0.55
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 33 0.55
gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo ... 33 0.55
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 33 0.55
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 33 0.72
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens] 33 0.72
gi|120587019 zinc finger protein 318 [Homo sapiens] 33 0.72
gi|38505159 transcription factor-like 5 protein [Homo sapiens] 33 0.72
gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens] 32 1.6
gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens] 32 1.6
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 32 1.6
gi|157743247 F-box protein 45 [Homo sapiens] 32 1.6
gi|27436910 partner and localizer of BRCA2 [Homo sapiens] 31 2.1
gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens] 31 2.1
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 31 2.1
gi|5730021 regulatory solute carrier protein, family 1, member 1... 31 2.1
>gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
sapiens]
Length = 465
Score = 978 bits (2527), Expect = 0.0
Identities = 465/465 (100%), Positives = 465/465 (100%)
Query: 1 MCGPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCAR 60
MCGPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCAR
Sbjct: 1 MCGPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCAR 60
Query: 61 VCRAQERAGHGQLAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPTPDFCRGYFD 120
VCRAQERAGHGQLAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPTPDFCRGYFD
Sbjct: 61 VCRAQERAGHGQLAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPTPDFCRGYFD 120
Query: 121 VMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKD 180
VMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKD
Sbjct: 121 VMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKD 180
Query: 181 DPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGH 240
DPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGH
Sbjct: 181 DPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGH 240
Query: 241 CNTDHMERDLNIVVHVQHYENMDTRTPINNLHATQMNNAVPTSPLLQQMGHPHSYPNLGQ 300
CNTDHMERDLNIVVHVQHYENMDTRTPINNLHATQMNNAVPTSPLLQQMGHPHSYPNLGQ
Sbjct: 241 CNTDHMERDLNIVVHVQHYENMDTRTPINNLHATQMNNAVPTSPLLQQMGHPHSYPNLGQ 300
Query: 301 ISNPYEQQPPGKELNKYASLKAVGSSDGDWAVSTLKSPKADKVNDDFYTKRRHLAELAAK 360
ISNPYEQQPPGKELNKYASLKAVGSSDGDWAVSTLKSPKADKVNDDFYTKRRHLAELAAK
Sbjct: 301 ISNPYEQQPPGKELNKYASLKAVGSSDGDWAVSTLKSPKADKVNDDFYTKRRHLAELAAK 360
Query: 361 GNLPLHPVRVEDEPRAFSPEHGPAKQNGQKSRTNKMPPHPLAYTSTTNFKGWDPNEQSLR 420
GNLPLHPVRVEDEPRAFSPEHGPAKQNGQKSRTNKMPPHPLAYTSTTNFKGWDPNEQSLR
Sbjct: 361 GNLPLHPVRVEDEPRAFSPEHGPAKQNGQKSRTNKMPPHPLAYTSTTNFKGWDPNEQSLR 420
Query: 421 RQAYSNKGKLGTAETGSSDPLGTRPQHYPPPQPYFITNSKTEVTV 465
RQAYSNKGKLGTAETGSSDPLGTRPQHYPPPQPYFITNSKTEVTV
Sbjct: 421 RQAYSNKGKLGTAETGSSDPLGTRPQHYPPPQPYFITNSKTEVTV 465
>gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo
sapiens]
Length = 262
Score = 483 bits (1244), Expect = e-136
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MCGPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCAR 60
MCGPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCAR
Sbjct: 1 MCGPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCAR 60
Query: 61 VCRAQERAGHGQLAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPTPDFCRGYFD 120
VCRAQERAGHGQLAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPTPDFCRGYFD
Sbjct: 61 VCRAQERAGHGQLAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPTPDFCRGYFD 120
Query: 121 VMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKD 180
VMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKD
Sbjct: 121 VMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKD 180
Query: 181 DPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSR 229
DPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSR
Sbjct: 181 DPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSR 229
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 175 bits (444), Expect = 7e-44
Identities = 130/440 (29%), Positives = 190/440 (43%), Gaps = 116/440 (26%)
Query: 43 RRVLRLLLGCFLTELCARVCRAQERAGHGQLA---------QLGGVLLLAGGNRSGAA-- 91
R +L LLL +L V A+ RA + L+ + GG L G +G A
Sbjct: 5 RLLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARA 64
Query: 92 ------SGEASEGAEASDAPPTRAPTPDFCRGYFDVMGQWDPPFNCSSGD--FIFCCGTC 143
+ A A A + A T + C GY+DV GQ+D F C++ + +++CCGTC
Sbjct: 65 PGIPEAGSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYCCGTC 124
Query: 144 GFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDP--LHDPTKDKTNLIVYIICGV 201
+RFCC + +L+Q CTNY +P+W+ T P +DP KDKTN VYI CGV
Sbjct: 125 YYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGV 184
Query: 202 VAVMVLVGIFTKLGLEKAHRPQRE-HMSRALADVMRPQGHCNTDHMERDLNIVVHVQHYE 260
+A +++ G+F K+ +KAHRP RE ++ RALAD++R QG H ER+ + E
Sbjct: 185 IAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAIDTSPKE 244
Query: 261 NMDTR-------TPINNLHAT--------------QMNNAVPTSPLLQQMGH-------- 291
N R TP+ T ++N + + + GH
Sbjct: 245 NTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGDHQYN 304
Query: 292 -----------PHSYPNLGQI----SNPYE-----------QQPPGKEL------NKYAS 319
PH P + I + PY+ PP E +KY+S
Sbjct: 305 HPILSSVTQIPPHEKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSS 364
Query: 320 LKAVGSSDGDWAVSTLKSPKADKVNDDFYTKRRHLAELAAKGNLPLH------------- 366
LK + DK D++Y +RRHL +LAA+G LPL+
Sbjct: 365 LKRL----------------TDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRE 408
Query: 367 ----PVRVEDEPRAFSPEHG 382
P+R + R SP+ G
Sbjct: 409 RPRRPIRAMSQDRVLSPDRG 428
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 174 bits (441), Expect = 2e-43
Identities = 85/163 (52%), Positives = 111/163 (68%), Gaps = 7/163 (4%)
Query: 81 LLAGGNRSGAASGEASEGAEASDAPPTRAPTP-DFCRGYFDVMGQWDPPFNCSSGDFIFC 139
LL SG A ++G A P T AP D CRGY+DVMGQWDPPFNCSSG + FC
Sbjct: 28 LLLARPPSGRAGAPEAQGPAA---PGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFC 84
Query: 140 CGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDPL--HDPTKDKTNLIVYI 197
CGTCG+RFCC RRL+QS C+NYDTP W+ TG+PPAR D DP +++++ VY
Sbjct: 85 CGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYA 144
Query: 198 ICGVVAVMVLVGIFTKLGLEKAHRPQ-REHMSRALADVMRPQG 239
+CGV A++VL GI +LGLE+AH P+ R ++RAL ++++ G
Sbjct: 145 VCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPG 187
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 174 bits (441), Expect = 2e-43
Identities = 85/163 (52%), Positives = 111/163 (68%), Gaps = 7/163 (4%)
Query: 81 LLAGGNRSGAASGEASEGAEASDAPPTRAPTP-DFCRGYFDVMGQWDPPFNCSSGDFIFC 139
LL SG A ++G A P T AP D CRGY+DVMGQWDPPFNCSSG + FC
Sbjct: 28 LLLARPPSGRAGAPEAQGPAA---PGTTAPEGGDRCRGYYDVMGQWDPPFNCSSGAYSFC 84
Query: 140 CGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDPL--HDPTKDKTNLIVYI 197
CGTCG+RFCC RRL+QS C+NYDTP W+ TG+PPAR D DP +++++ VY
Sbjct: 85 CGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPGRERSHTAVYA 144
Query: 198 ICGVVAVMVLVGIFTKLGLEKAHRPQ-REHMSRALADVMRPQG 239
+CGV A++VL GI +LGLE+AH P+ R ++RAL ++++ G
Sbjct: 145 VCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPG 187
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 148 bits (374), Expect = 9e-36
Identities = 106/333 (31%), Positives = 148/333 (44%), Gaps = 55/333 (16%)
Query: 73 LAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPTPDFCRGYFDVMGQWDPPFNCS 132
L +L G L GG S A+G + A + A P + C GY+DVMGQ+D FNCS
Sbjct: 40 LRRLTGALTGGGGAASPGANGTRTGPAGGAGAAARAPPPAELCHGYYDVMGQYDATFNCS 99
Query: 133 SGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPA--------------- 177
+G + FCCGTC +RFCC + RL Q++C+NYDTP W T P A
Sbjct: 100 TGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGP 159
Query: 178 ---------RKDDPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREH-- 226
R + Y++CGV++ + VG+ K+ KA R R H
Sbjct: 160 GQAGWLEGGRTGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHRD 219
Query: 227 --MSRALADVMRPQ-GHCNTDHMERDLNIVVHVQHYENMDTRTPINNLHATQMNN----- 278
+ RAL D++R Q G R ++ + ++M RTP N + + N
Sbjct: 220 INVPRALVDILRHQAGPGTRPDRARSSSLTPGIGGPDSMPPRTPKNLYNTVKTPNLDWRA 279
Query: 279 AVPTSPLL--QQMGHPHSYPNLGQISNPYEQQPPGKELNKYASLKAVGSSDGDWAVSTLK 336
P SP L + S+ NL + YE ELN+Y+SLK +
Sbjct: 280 LPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVK-SELNRYSSLKRL------------- 325
Query: 337 SPKADKVNDDFYTKRRHLAELAAKGNLPLHPVR 369
A+K D+ Y KRR L +G LPLH +R
Sbjct: 326 ---AEKDLDEAYLKRRPLE--LPRGTLPLHALR 353
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 113 DFCRGYFDVMGQWDPPFNC----SSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPL 168
++C G+ D G W F C GD CCG+C R+CC+ + RL+Q C D
Sbjct: 36 EYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARLDQGGC---DNDR 92
Query: 169 WLNTGKP-PARKDDPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQRE-H 226
G+P A KD P D + + I+ V +++G + RP+++
Sbjct: 93 QQGAGEPGRADKDGP--DGSAVPIYVPFLIVGSVFVAFIILGSLVAACCCRCLRPKQDPQ 150
Query: 227 MSRA 230
SRA
Sbjct: 151 QSRA 154
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 52.0 bits (123), Expect = 1e-06
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 113 DFCRGYFDVMGQWDPPFNCSSG----DFIFCCGTCGFRFCCTFKKRRLNQSTCTN 163
++C G+ DV G + F C D CCG+C R+CC RL Q CTN
Sbjct: 26 EYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGCTN 80
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 47.4 bits (111), Expect = 3e-05
Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 115 CRGYFDVMGQWDPPFNCSSGDFIFCCGTCGFRFCC 149
C Y D G W P FNC F FCCGTC R+CC
Sbjct: 31 CLWYLDRNGSWHPGFNCEF--FTFCCGTCYHRYCC 63
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 35.4 bits (80), Expect = 0.11
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 3 GPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARVC 62
G R +A G G G RG RRG GG P +RR L L G R+
Sbjct: 167 GSGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGP-RAQAVRRRLSALRGRGRRRRLKRLR 225
Query: 63 RAQERAGHGQL 73
RAQE +G L
Sbjct: 226 RAQETSGAAAL 236
>gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo
sapiens]
Length = 286
Score = 34.3 bits (77), Expect = 0.25
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 3 GPRRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARVC 62
G R +A G G G RG RRG GG P +RR L L G R+
Sbjct: 169 GGGRSSAGGGGGGGGGGGGRGSRRGRGGGERGGP-RAQAVRRRLSALRGRGRRRRLKRLR 227
Query: 63 RAQERAGHGQL 73
RAQE G L
Sbjct: 228 RAQETRGAAAL 238
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 33.9 bits (76), Expect = 0.32
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 7 LAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLG 39
L G S GS+GR SRGG GS GG + G G
Sbjct: 475 LGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYG 507
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 33.1 bits (74), Expect = 0.55
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 336 KSPKADKVNDDFYTKRRHLAEL--AAKGNLPLHPVRVEDE---------PRAFSPEHGPA 384
+ PK + V T++ LAE+ K NL L R E E P + E P
Sbjct: 439 REPKKEAVKSFIETQKALLAEIQNGCKRNLVLAREREEKEQPPQLSASMPETTATEPQPD 498
Query: 385 KQNGQKSRTNKMPPHPLAYTSTTNFKGWDPNEQSLRRQAYSNKGKLGTAETGSSDPLGTR 444
+ + P P + + + + E+ + + G + T +TGSS+P
Sbjct: 499 DEPAAGVQNGAPSPAPSPDSDSDSDSDGEEEEEEEGERDETPSGAIDTRDTGSSEP---- 554
Query: 445 PQHYPPPQP 453
PPP+P
Sbjct: 555 ---QPPPEP 560
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 33.1 bits (74), Expect = 0.55
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 336 KSPKADKVNDDFYTKRRHLAEL--AAKGNLPLHPVRVEDE---------PRAFSPEHGPA 384
+ PK + V T++ LAE+ K NL L R E E P + E P
Sbjct: 439 REPKKEAVKSFIETQKALLAEIQNGCKRNLVLAREREEKEQPPQLSASMPETTATEPQPD 498
Query: 385 KQNGQKSRTNKMPPHPLAYTSTTNFKGWDPNEQSLRRQAYSNKGKLGTAETGSSDPLGTR 444
+ + P P + + + + E+ + + G + T +TGSS+P
Sbjct: 499 DEPAAGVQNGAPSPAPSPDSDSDSDSDGEEEEEEEGERDETPSGAIDTRDTGSSEP---- 554
Query: 445 PQHYPPPQP 453
PPP+P
Sbjct: 555 ---QPPPEP 560
>gi|239751194 PREDICTED: hypothetical protein XP_002347745 [Homo
sapiens]
Length = 325
Score = 33.1 bits (74), Expect = 0.55
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 3 GPR-RLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARV 61
GPR RL G+ A+R G G +GG + +PG+ T R + + L ARV
Sbjct: 40 GPRLRLGGSGTRQLQQAAATREGEEGEAGGLSDQPGVMRTQGRTVG------VAALHARV 93
Query: 62 CRAQERAG-HGQLAQLG 77
RA +RAG H A+LG
Sbjct: 94 -RASQRAGRHPVEAELG 109
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 33.1 bits (74), Expect = 0.55
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 336 KSPKADKVNDDFYTKRRHLAEL--AAKGNLPLHPVRVEDE---------PRAFSPEHGPA 384
+ PK + V T++ LAE+ K NL L R E E P + E P
Sbjct: 439 REPKKEAVKSFIETQKALLAEIQNGCKRNLVLAREREEKEQPPQLSASMPETTATEPQPD 498
Query: 385 KQNGQKSRTNKMPPHPLAYTSTTNFKGWDPNEQSLRRQAYSNKGKLGTAETGSSDPLGTR 444
+ + P P + + + + E+ + + G + T +TGSS+P
Sbjct: 499 DEPAAGVQNGAPSPAPSPDSDSDSDSDGEEEEEEEGERDETPSGAIDTRDTGSSEP---- 554
Query: 445 PQHYPPPQP 453
PPP+P
Sbjct: 555 ---QPPPEP 560
>gi|239745684 PREDICTED: hypothetical protein XP_002343515 [Homo
sapiens]
Length = 368
Score = 33.1 bits (74), Expect = 0.55
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 3 GPR-RLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARV 61
GPR RL G+ A+R G G +GG + +PG+ T R + + L ARV
Sbjct: 83 GPRLRLGGSGTRQLQQAAATREGEEGEAGGLSDQPGVMRTQGRTVG------VAALHARV 136
Query: 62 CRAQERAG-HGQLAQLG 77
RA +RAG H A+LG
Sbjct: 137 -RASQRAGRHPVEAELG 152
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 33.1 bits (74), Expect = 0.55
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 26/187 (13%)
Query: 283 SPLLQQMGHPHSYPNLGQISNPYEQQPPGKELNKYASLKAVGSSDGDWA------VSTLK 336
SP L G Y G +S P +Q + L + V + +S L
Sbjct: 708 SPELSMNGQAAGYELCGVLSRPSSKQNTPQYLASPLDQEVVPCTPSHVGRPRLEKLSGLA 767
Query: 337 SPKADKVNDDFYTKRRHLAELAAKGNLPLHPVRVEDEPRAFSPEHGPAKQNGQKSRTNKM 396
+P +++ RRHL++ +P P E RA EH K+NG ++ +
Sbjct: 768 APDYTRLSPAKIVLRRHLSQ---DHTVPGRPAASELHSRA---EH--TKENGLPYQSPSV 819
Query: 397 P---------PHPLAYTSTTNFKGWDPNEQSLRRQAYSNKGKLGTAETGSSDPLGT-RPQ 446
P P PL+ G +E+ LR +AY + G+L T+ S PL T +P
Sbjct: 820 PGSMKLSPQDPRPLS-PGALQLAGEKSSEKGLRERAYGSSGELITS-LPISIPLSTVQPN 877
Query: 447 HYPPPQP 453
P P
Sbjct: 878 KLPVSIP 884
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 32.7 bits (73), Expect = 0.72
Identities = 33/97 (34%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 5 RRLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARVCRA 64
RR+ + G G RA GG GS + PG G R R G AR A
Sbjct: 3 RRILSWGDQAGERARAPSGG--GSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAA 60
Query: 65 QERAGHGQLAQLGGVLLLAGG--NRSGAASGEASEGA 99
R+G G AQ GG GG R+GA G G+
Sbjct: 61 WGRSGGGPAAQSGGD---GGGLPRRAGAEPGGRGGGS 94
>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
Length = 422
Score = 32.7 bits (73), Expect = 0.72
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 10 PGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARVCRAQE--R 67
PG LG G A G+ GG PG G +RR L+LL F R E R
Sbjct: 14 PGQQLGGQGAAP-----GAGGGPGGGPGPGPCLRRELKLLESIF--------HRGHERFR 60
Query: 68 AGHGQLAQLGGVLLLAGGNRSGAAS 92
L +L LLAG +GA +
Sbjct: 61 IASACLDELSCEFLLAGAGGAGAGA 85
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 32.7 bits (73), Expect = 0.72
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 6 RLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGL-GDTMRRVLRLLLG 51
R ++ G S + R RG G SG R PGL D++ + LR+ +G
Sbjct: 107 RGSSRGESRADYARDGRGDHPGDSGSRRRSPGLCSDSLEKSLRITVG 153
>gi|38505159 transcription factor-like 5 protein [Homo sapiens]
Length = 500
Score = 32.7 bits (73), Expect = 0.72
Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 1 MCGPRRLAAPGSSLGSFGRASRGGRRGSSGGRAA--EPGLGDTMRRV-LRLLLGCFLTEL 57
M GP P + + G A+ G+ GG AA EPGL T + L + T+L
Sbjct: 1 MSGPGPREPPPEAGAAGGEAAV---EGAGGGDAALGEPGLSFTTTDLSLVEMTEVEYTQL 57
Query: 58 CARVCRAQERAGHGQL-AQLGGVLLLAGGNRSGAASGEASEGAEASDAP------PTRAP 110
+C E A G+L +L LL A G GA +G + G + AP P+
Sbjct: 58 QHILCSHMEAAADGELETRLNSALLAAAG--PGAGAGGFAAGGQGGAAPVYPVLCPSALA 115
Query: 111 TPDFCRGYFD 120
C G+ D
Sbjct: 116 ADAPCLGHID 125
>gi|222352166 nel-like 1 isoform 2 precursor [Homo sapiens]
Length = 763
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 115 CRGYFDV-MGQWDPPFNCSSGDFIF----CCGTC-GFRFCCTFKKRRLNQSTCTNYDT 166
CRG V + + PP NCS D I CC C G FC K N S C N++T
Sbjct: 356 CRGGVLVKITEMCPPLNCSEKDHILPENQCCRVCRGHNFCAEGPKCGEN-SECKNWNT 412
>gi|222352164 nel-like 1 isoform 1 precursor [Homo sapiens]
Length = 810
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 115 CRGYFDV-MGQWDPPFNCSSGDFIF----CCGTC-GFRFCCTFKKRRLNQSTCTNYDT 166
CRG V + + PP NCS D I CC C G FC K N S C N++T
Sbjct: 356 CRGGVLVKITEMCPPLNCSEKDHILPENQCCRVCRGHNFCAEGPKCGEN-SECKNWNT 412
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 31.6 bits (70), Expect = 1.6
Identities = 45/187 (24%), Positives = 70/187 (37%), Gaps = 17/187 (9%)
Query: 281 PTSPLLQQMGHPHSYPN--LGQISNPYEQQPPGKELNKYASLKAVGSSDGDWAVSTLKSP 338
P+S Q G P P G ++P + QPP E + SL++ G+S ++++L S
Sbjct: 580 PSSGYSSQSGTPTLPPKGLAGPPASPGKAQPPKPE--RVTSLRSPGASVSS-SLTSLCSS 636
Query: 339 KADKVNDDFYTKRRHLAELAAKGNLPLHPVRVEDEPRAFSPEHGPAKQNGQKSRTNKMPP 398
+D D + + L L + +P HP P FSP + + P
Sbjct: 637 SSDPAPSD-RSGPQILTPLGDRFVIPPHP----KVPAPFSPPPSKPRSPNPAAPALAAPA 691
Query: 399 HPLAYTSTTNFKGWDPNEQSLRRQAYSNKGKLGTAETGSSDPLGTRPQHYPPPQPYFITN 458
STT+ P + + + S P P ++PPP P
Sbjct: 692 VVPGPVSTTDAS---PQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPP----T 744
Query: 459 SKTEVTV 465
K EV V
Sbjct: 745 KKPEVVV 751
>gi|157743247 F-box protein 45 [Homo sapiens]
Length = 286
Score = 31.6 bits (70), Expect = 1.6
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 9 APGSSLGSFGRASRGGRRGS---SGGRAAEPGLGDTMRRVLRLLLGCF-LTEL--CARVC 62
APG+ S G GG G+ SG AA G G RVL L+ L+EL CA VC
Sbjct: 5 APGAGAASGGAGCSGGGAGAGAGSGSGAAGAG-GRLPSRVLELVFSYLELSELRSCALVC 63
Query: 63 RAQERAGHG 71
+ R HG
Sbjct: 64 KHWYRCLHG 72
>gi|27436910 partner and localizer of BRCA2 [Homo sapiens]
Length = 1186
Score = 31.2 bits (69), Expect = 2.1
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 110 PTPDFCRGYFDVMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLW 169
PT D C F ++G P F G + R CCT + L S C DT +
Sbjct: 719 PTTDMCSPAFPILGT-TPAFG-PQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQF 776
Query: 170 LNTGKP 175
++G P
Sbjct: 777 DSSGSP 782
>gi|239756701 PREDICTED: similar to hCG1986016 [Homo sapiens]
Length = 325
Score = 31.2 bits (69), Expect = 2.1
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 3 GPR-RLAAPGSSLGSFGRASRGGRRGSSGGRAAEPGLGDTMRRVLRLLLGCFLTELCARV 61
GPR RL G+ A+R G G +GG + +PG+ T R + + L AR
Sbjct: 40 GPRLRLGGSGTRQLQQAAATREGEEGEAGGLSDQPGVMRTQGRTVG------VAALHARF 93
Query: 62 CRAQERAG-HGQLAQLG 77
RA +RAG H A+LG
Sbjct: 94 -RASQRAGRHPVEAELG 109
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 31.2 bits (69), Expect = 2.1
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 30/144 (20%)
Query: 312 KELNKYASLKAVGSSDGDWAVSTLKSPKADKVNDDFYTKRRHLAELAAKGNLPLHPVRVE 371
KEL+K+ +L A +D WA + ++ YT++ + ++ +
Sbjct: 303 KELDKFDNLDA--EADEGWAGAQMEVD---------YTEQLNFSD--------------D 337
Query: 372 DEPRAFSPEHGPAKQNGQKSRTNKMPPHPLAYTSTTNFKGWDPNEQSLRRQAYSNKGKLG 431
DE + SP+ ++ G K+ N S T P + S+ + Y KG
Sbjct: 338 DEQGSNSPKENNSEDQGSKASENNENKKETDEVSNTKSSSQIPAQPSVAKVPY-GKGPSF 396
Query: 432 TAETGSSDPLGTRP----QHYPPP 451
E G+S L P Q +PPP
Sbjct: 397 NQERGTSSHLPPPPKLLAQQHPPP 420
>gi|5730021 regulatory solute carrier protein, family 1, member 1
[Homo sapiens]
Length = 617
Score = 31.2 bits (69), Expect = 2.1
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 223 QREHMS-RALADVMRPQGHCNTD--------HMERDLNIVVHVQHYENMDTRTPINNLHA 273
++EH+S + L+D H TD + ++ + +++ T+ +LH
Sbjct: 68 KKEHLSLQDLSDHASSADHAPTDQSPAMPMQNSSEEITVAGNLEKSAERSTQGLKFHLHT 127
Query: 274 TQMNNAVPTSPLLQQ----MGHPHSYP---NLGQISNPYEQQPPGKELNKYASLKAVGSS 326
Q + TS + + +G +P NL Q+S+P + + PG E + A KA
Sbjct: 128 RQEASLSVTSTRMHEPQMFLGEKDWHPENQNLSQVSDPQQHEEPGNEQYEVAQQKASHDQ 187
Query: 327 DGDWAVSTLKSPKADKVN 344
+ + L+ P+ + N
Sbjct: 188 EYLCNIGDLELPEERQQN 205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,783,901
Number of Sequences: 37866
Number of extensions: 1097577
Number of successful extensions: 5119
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 5056
Number of HSP's gapped (non-prelim): 85
length of query: 465
length of database: 18,247,518
effective HSP length: 106
effective length of query: 359
effective length of database: 14,233,722
effective search space: 5109906198
effective search space used: 5109906198
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.